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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2013 Feb 20;69(Pt 3):o414–o415. doi: 10.1107/S1600536813004492

3-(4-Chloro­phen­yl)-5-(4-fluoro­phen­yl)-4,5-dihydro-1H-pyrazole-1-carbothio­amide

Bakr F Abdel-Wahab a,, Hanan A Mohamed b, Seik Weng Ng c,d, Edward R T Tiekink c,*
PMCID: PMC3588515  PMID: 23476591

Abstract

In the title compound, C16H13ClFN3S, the pyrazole ring adopts an envelope conformation with the methine C atom being the flap atom. The chloro- and fluoro­benzene rings are twisted out of the plane of the pyrazole ring [dihedral angles = 15.12 (11) and 80.55 (10)°, respectively]. The amine group is orientated towards a ring N atom, forming an intra­molecular N—H⋯N hydrogen bond. This H atom also forms a hydrogen bond to the F atom, which along with N—H⋯S hydrogen bonding leads to a supra­molecular chain along the c axis. Connections between chains of the type Cl⋯π lead to a layer in the bc plane.

Related literature  

For the biological activity of pyrazolin-1-yl­thia­zoles, see: Abdel-Wahab et al. (2009, 2012); Chimenti et al. (2010). For related structures, see: Chantrapromma et al. (2012); Abdel-Wahab et al. (2013).graphic file with name e-69-0o414-scheme1.jpg

Experimental  

Crystal data  

  • C16H13ClFN3S

  • M r = 333.80

  • Monoclinic, Inline graphic

  • a = 14.5402 (9) Å

  • b = 11.2700 (8) Å

  • c = 9.5169 (6) Å

  • β = 103.850 (6)°

  • V = 1514.17 (17) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.40 mm−1

  • T = 295 K

  • 0.40 × 0.30 × 0.20 mm

Data collection  

  • Agilent SuperNova Dual diffractometer with an Atlas detector

  • Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) T min = 0.898, T max = 1.000

  • 10191 measured reflections

  • 3478 independent reflections

  • 2570 reflections with I > 2σ(I)

  • R int = 0.031

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.041

  • wR(F 2) = 0.111

  • S = 1.01

  • 3478 reflections

  • 199 parameters

  • H-atom parameters constrained

  • Δρmax = 0.19 e Å−3

  • Δρmin = −0.28 e Å−3

Data collection: CrysAlis PRO (Agilent, 2011); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813004492/hg5293sup1.cif

e-69-0o414-sup1.cif (19KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813004492/hg5293Isup2.hkl

e-69-0o414-Isup2.hkl (170.6KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813004492/hg5293Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg1 is the centroid of the C1–C6 ring.

D—H⋯A D—H H⋯A DA D—H⋯A
N3—H31⋯N1 0.88 2.24 2.617 (2) 106
N3—H31⋯F1i 0.88 2.41 3.257 (2) 163
N3—H32⋯S1ii 0.88 2.81 3.5203 (19) 139
C4—Cl1⋯Cg1iii 1.735 (2) 3.9240 (12) 4.183 (2) 86.17 (17)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

We thank the Ministry of Higher Education (Malaysia) for funding structural studies through the High-Impact Research scheme (UM.C/HIR-MOHE/SC/12).

supplementary crystallographic information

Comment

Pyrazolin-1-ylthiazole derivatives are known to exhibit biological potential (Abdel-Wahab et al., 2012; Abdel-Wahab et al., 2009; Chimenti et al., 2010) and motivated the investigation of the title compound, (I).

The central pyrazolyl ring in (I), Fig. 1, adopts an envelope conformation with the methine-C9 atom being the flap atom. The amine group is orientated towards the ring-N2 atom, forming a hydrogen bond, Table 1, assisted by the near co-planar relationship between the thioamide group and the pyrazolyl ring with the N1—N2—C16—N3 torsion angle being -0.7 (2)°. Both the chloro- and fluoro-benzene rings are twisted out of the least-squares plane through the five-membered ring, forming dihedral angles of 15.12 (11) and 80.55 (10)°, respectively. Quite similar conformations have been observed in related structures bearing two six-membered rings (Chantrapromma et al., 2012; Abdel-Wahab et al., 2013).

In the crystal packing, the amine-H31 atom participating in the intramolecular N—H···N hydrogen bond also forms a hydrogen bond to the F1 atom, Table 1. This interaction along with an N—H···S hydrogen bond leads to a supramolecular chain along the c axis, Table 1. Chains are connected into a layer in the bc plane by Cl···π interactions, Fig. 2 and Table 1. Layers stack along the a axis without specific interactions between them, Fig. 3.

Experimental

To a suspension of (E)-1-(4-chlorophenyl)-3-(4-fluorophenyl)prop-2-en-1-one (1 mmol, 0.26 g) and sodium hydroxide (2.5 mmol, 1.0 g) in ethanol (20 ml), thiosemicarbazide (1.2 mmol, 0.11 g) was added. The mixture was refluxed for 12 h, then left to cool. The solid product was filtered off, washed with ethanol and dried. Recrystallization was by slow evaporation of its DMF solution.

Refinement

Nitrogen- and carbon-bound H-atoms were placed in calculated positions (N—H = 0.88 Å, and C—H 0.93 to 0.98 Å) and were included in the refinement in the riding model approximation, with Uiso(H) = 1.2–1.5Uequiv(N,C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I) showing the atom-labelling scheme and displacement ellipsoids at the 35% probability level.

Fig. 2.

Fig. 2.

A view of the supramolecular layer in the bc plane in (I) mediated by N—H···S, N—H···F and Cl···π interactions, shown as orange, blue and purple dashed lines, respectively.

Fig. 3.

Fig. 3.

A view of the crystal packing in projection down the c axis. The N—H···S, N—H···F and Cl···π interactions are shown as orange, blue and purple dashed lines, respectively.

Crystal data

C16H13ClFN3S F(000) = 688
Mr = 333.80 Dx = 1.464 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 2717 reflections
a = 14.5402 (9) Å θ = 2.9–27.5°
b = 11.2700 (8) Å µ = 0.40 mm1
c = 9.5169 (6) Å T = 295 K
β = 103.850 (6)° Prism, colourless
V = 1514.17 (17) Å3 0.40 × 0.30 × 0.20 mm
Z = 4

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector 3478 independent reflections
Radiation source: SuperNova (Mo) X-ray Source 2570 reflections with I > 2σ(I)
Mirror monochromator Rint = 0.031
Detector resolution: 10.4041 pixels mm-1 θmax = 27.5°, θmin = 2.9°
ω scan h = −15→18
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) k = −14→11
Tmin = 0.898, Tmax = 1.000 l = −12→12
10191 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111 H-atom parameters constrained
S = 1.01 w = 1/[σ2(Fo2) + (0.0432P)2 + 0.4541P] where P = (Fo2 + 2Fc2)/3
3478 reflections (Δ/σ)max = 0.001
199 parameters Δρmax = 0.19 e Å3
0 restraints Δρmin = −0.28 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl1 0.54931 (5) 0.65490 (7) 0.48095 (8) 0.0811 (3)
S1 −0.01110 (4) 1.16708 (5) −0.15948 (5) 0.04527 (17)
F1 0.27125 (11) 1.14248 (13) −0.60633 (13) 0.0658 (4)
N1 0.20984 (11) 1.00001 (15) 0.08010 (15) 0.0379 (4)
N2 0.13525 (11) 1.03202 (14) −0.03592 (15) 0.0368 (4)
N3 0.10065 (13) 1.17944 (16) 0.10514 (17) 0.0463 (4)
H31 0.1483 1.1542 0.1741 0.056*
H32 0.0669 1.2407 0.1207 0.056*
C1 0.31834 (13) 0.83907 (18) 0.1544 (2) 0.0381 (4)
C2 0.37595 (15) 0.9020 (2) 0.2678 (2) 0.0498 (5)
H2 0.3661 0.9829 0.2772 0.060*
C3 0.44754 (16) 0.8454 (2) 0.3665 (2) 0.0559 (6)
H3 0.4860 0.8879 0.4419 0.067*
C4 0.46163 (14) 0.7261 (2) 0.3529 (2) 0.0505 (6)
C5 0.40755 (15) 0.6624 (2) 0.2408 (3) 0.0533 (6)
H5 0.4187 0.5819 0.2314 0.064*
C6 0.33602 (14) 0.7194 (2) 0.1414 (2) 0.0476 (5)
H6 0.2993 0.6766 0.0647 0.057*
C7 0.23925 (13) 0.89711 (18) 0.05223 (19) 0.0366 (4)
C8 0.18302 (14) 0.84371 (17) −0.08689 (19) 0.0394 (4)
H8A 0.1424 0.7802 −0.0687 0.047*
H8B 0.2242 0.8136 −0.1452 0.047*
C9 0.12464 (13) 0.95057 (17) −0.15998 (18) 0.0365 (4)
H9 0.0581 0.9282 −0.1966 0.044*
C10 0.16342 (12) 1.00448 (17) −0.27969 (17) 0.0330 (4)
C11 0.23938 (13) 1.08168 (18) −0.24895 (19) 0.0403 (5)
H11 0.2656 1.1032 −0.1534 0.048*
C12 0.27723 (14) 1.12774 (19) −0.3580 (2) 0.0442 (5)
H12 0.3288 1.1791 −0.3370 0.053*
C13 0.23618 (15) 1.09503 (19) −0.4978 (2) 0.0430 (5)
C14 0.16111 (15) 1.01890 (19) −0.53370 (19) 0.0463 (5)
H14 0.1350 0.9983 −0.6296 0.056*
C15 0.12497 (14) 0.97331 (18) −0.42252 (19) 0.0400 (4)
H15 0.0741 0.9210 −0.4442 0.048*
C16 0.07946 (13) 1.12480 (17) −0.02300 (19) 0.0352 (4)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl1 0.0556 (4) 0.0764 (5) 0.0967 (5) 0.0061 (3) −0.0106 (3) 0.0318 (4)
S1 0.0410 (3) 0.0485 (4) 0.0446 (3) 0.0047 (2) 0.0067 (2) 0.0045 (2)
F1 0.0922 (10) 0.0679 (10) 0.0444 (7) −0.0139 (8) 0.0304 (7) 0.0066 (6)
N1 0.0384 (8) 0.0440 (10) 0.0306 (7) 0.0025 (7) 0.0068 (6) 0.0007 (7)
N2 0.0406 (8) 0.0402 (10) 0.0295 (7) 0.0046 (7) 0.0080 (6) −0.0024 (6)
N3 0.0537 (10) 0.0438 (10) 0.0409 (9) 0.0073 (8) 0.0106 (7) −0.0069 (7)
C1 0.0368 (10) 0.0409 (12) 0.0380 (9) 0.0007 (8) 0.0116 (7) 0.0033 (8)
C2 0.0544 (13) 0.0427 (13) 0.0485 (12) 0.0034 (10) 0.0045 (9) −0.0004 (9)
C3 0.0520 (13) 0.0587 (16) 0.0488 (12) −0.0014 (11) −0.0041 (10) 0.0004 (10)
C4 0.0349 (10) 0.0542 (15) 0.0606 (13) 0.0006 (10) 0.0078 (9) 0.0182 (11)
C5 0.0412 (11) 0.0397 (13) 0.0768 (15) 0.0024 (10) 0.0094 (10) 0.0066 (11)
C6 0.0400 (11) 0.0449 (13) 0.0565 (12) −0.0026 (9) 0.0091 (9) −0.0029 (10)
C7 0.0360 (10) 0.0397 (12) 0.0361 (9) −0.0015 (8) 0.0129 (7) 0.0007 (8)
C8 0.0462 (11) 0.0372 (11) 0.0355 (9) −0.0004 (9) 0.0111 (8) −0.0002 (8)
C9 0.0364 (9) 0.0401 (11) 0.0324 (9) −0.0022 (8) 0.0074 (7) −0.0048 (8)
C10 0.0329 (9) 0.0343 (10) 0.0307 (8) 0.0027 (8) 0.0056 (7) −0.0015 (7)
C11 0.0412 (10) 0.0458 (12) 0.0313 (9) −0.0044 (9) 0.0033 (7) −0.0028 (8)
C12 0.0431 (11) 0.0462 (13) 0.0437 (11) −0.0074 (9) 0.0114 (8) −0.0010 (9)
C13 0.0575 (12) 0.0397 (12) 0.0354 (10) 0.0030 (10) 0.0181 (9) 0.0038 (8)
C14 0.0605 (13) 0.0466 (13) 0.0289 (9) −0.0014 (10) 0.0053 (8) −0.0020 (8)
C15 0.0440 (11) 0.0380 (11) 0.0350 (9) −0.0046 (9) 0.0037 (8) −0.0030 (8)
C16 0.0378 (9) 0.0351 (11) 0.0358 (9) −0.0042 (8) 0.0148 (7) 0.0024 (8)

Geometric parameters (Å, º)

Cl1—C4 1.735 (2) C5—H5 0.9300
S1—C16 1.6821 (19) C6—H6 0.9300
F1—C13 1.365 (2) C7—C8 1.505 (2)
N1—C7 1.285 (2) C8—C9 1.540 (3)
N1—N2 1.397 (2) C8—H8A 0.9700
N2—C16 1.347 (2) C8—H8B 0.9700
N2—C9 1.474 (2) C9—C10 1.514 (3)
N3—C16 1.335 (2) C9—H9 0.9800
N3—H31 0.8800 C10—C11 1.381 (3)
N3—H32 0.8800 C10—C15 1.386 (2)
C1—C6 1.384 (3) C11—C12 1.386 (3)
C1—C2 1.392 (3) C11—H11 0.9300
C1—C7 1.470 (3) C12—C13 1.373 (3)
C2—C3 1.380 (3) C12—H12 0.9300
C2—H2 0.9300 C13—C14 1.366 (3)
C3—C4 1.371 (3) C14—C15 1.388 (3)
C3—H3 0.9300 C14—H14 0.9300
C4—C5 1.367 (3) C15—H15 0.9300
C5—C6 1.385 (3)
C7—N1—N2 107.67 (15) C7—C8—H8B 111.4
C16—N2—N1 119.92 (15) C9—C8—H8B 111.4
C16—N2—C9 127.35 (15) H8A—C8—H8B 109.2
N1—N2—C9 112.63 (14) N2—C9—C10 111.49 (15)
C16—N3—H31 120.0 N2—C9—C8 100.63 (13)
C16—N3—H32 120.0 C10—C9—C8 112.91 (15)
H31—N3—H32 120.0 N2—C9—H9 110.5
C6—C1—C2 118.41 (18) C10—C9—H9 110.5
C6—C1—C7 120.48 (18) C8—C9—H9 110.5
C2—C1—C7 121.10 (19) C11—C10—C15 118.82 (17)
C3—C2—C1 120.5 (2) C11—C10—C9 121.08 (15)
C3—C2—H2 119.7 C15—C10—C9 120.06 (17)
C1—C2—H2 119.7 C10—C11—C12 121.19 (17)
C4—C3—C2 119.7 (2) C10—C11—H11 119.4
C4—C3—H3 120.2 C12—C11—H11 119.4
C2—C3—H3 120.2 C13—C12—C11 117.83 (19)
C3—C4—C5 121.16 (19) C13—C12—H12 121.1
C3—C4—Cl1 119.23 (17) C11—C12—H12 121.1
C5—C4—Cl1 119.61 (19) C14—C13—F1 118.55 (17)
C4—C5—C6 119.1 (2) C14—C13—C12 123.16 (18)
C4—C5—H5 120.4 F1—C13—C12 118.28 (19)
C6—C5—H5 120.4 C13—C14—C15 117.89 (17)
C5—C6—C1 121.1 (2) C13—C14—H14 121.1
C5—C6—H6 119.5 C15—C14—H14 121.1
C1—C6—H6 119.5 C10—C15—C14 121.10 (18)
N1—C7—C1 120.74 (17) C10—C15—H15 119.4
N1—C7—C8 113.88 (16) C14—C15—H15 119.4
C1—C7—C8 125.33 (18) N3—C16—N2 115.42 (16)
C7—C8—C9 102.08 (15) N3—C16—S1 122.79 (16)
C7—C8—H8A 111.4 N2—C16—S1 121.78 (14)
C9—C8—H8A 111.4
C7—N1—N2—C16 167.15 (16) C16—N2—C9—C8 −159.69 (18)
C7—N1—N2—C9 −9.4 (2) N1—N2—C9—C8 16.59 (19)
C6—C1—C2—C3 −1.4 (3) C7—C8—C9—N2 −16.22 (18)
C7—C1—C2—C3 177.32 (19) C7—C8—C9—C10 102.72 (17)
C1—C2—C3—C4 −0.3 (3) N2—C9—C10—C11 31.9 (2)
C2—C3—C4—C5 1.8 (4) C8—C9—C10—C11 −80.5 (2)
C2—C3—C4—Cl1 −177.91 (17) N2—C9—C10—C15 −150.42 (17)
C3—C4—C5—C6 −1.4 (4) C8—C9—C10—C15 97.1 (2)
Cl1—C4—C5—C6 178.23 (17) C15—C10—C11—C12 −0.1 (3)
C4—C5—C6—C1 −0.3 (3) C9—C10—C11—C12 177.60 (18)
C2—C1—C6—C5 1.7 (3) C10—C11—C12—C13 0.6 (3)
C7—C1—C6—C5 −177.00 (19) C11—C12—C13—C14 −0.7 (3)
N2—N1—C7—C1 179.67 (16) C11—C12—C13—F1 178.21 (18)
N2—N1—C7—C8 −2.9 (2) F1—C13—C14—C15 −178.68 (19)
C6—C1—C7—N1 165.27 (18) C12—C13—C14—C15 0.2 (3)
C2—C1—C7—N1 −13.4 (3) C11—C10—C15—C14 −0.4 (3)
C6—C1—C7—C8 −11.9 (3) C9—C10—C15—C14 −178.12 (18)
C2—C1—C7—C8 169.41 (19) C13—C14—C15—C10 0.3 (3)
N1—C7—C8—C9 12.9 (2) N1—N2—C16—N3 −0.7 (2)
C1—C7—C8—C9 −169.76 (17) C9—N2—C16—N3 175.38 (17)
C16—N2—C9—C10 80.3 (2) N1—N2—C16—S1 179.89 (13)
N1—N2—C9—C10 −103.38 (17) C9—N2—C16—S1 −4.1 (3)

Hydrogen-bond geometry (Å, º)

Cg1 is the centroid of the C1–C6 ring.

D—H···A D—H H···A D···A D—H···A
N3—H31···N1 0.88 2.24 2.617 (2) 106
N3—H31···F1i 0.88 2.41 3.257 (2) 163
N3—H32···S1ii 0.88 2.81 3.5203 (19) 139
C4—Cl1···Cg1iii 1.74 (1) 3.92 (1) 4.183 (2) 86 (1)

Symmetry codes: (i) x, y, z+1; (ii) x, −y+5/2, z+1/2; (iii) x, −y+1/2, z−1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HG5293).

References

  1. Abdel-Wahab, B. F., Abdel-Aziz, H. A. & Ahmed, E. M. (2009). Eur. J. Med. Chem. 44, 2632–2635. [DOI] [PubMed]
  2. Abdel-Wahab, B. F., Abdel-Latif, E., Mohamed, H. A. & Awad, G. E. A. (2012). Eur. J. Med. Chem. 52, 263–268. [DOI] [PubMed]
  3. Abdel-Wahab, B. F., Mohamed, H. A., Khidre, R. E., Ng, S. W. & Tiekink, E. R. T. (2013). Acta Cryst. E69, o386. [DOI] [PMC free article] [PubMed]
  4. Agilent (2011). CrysAlis PRO Agilent Technologies, Yarnton, England.
  5. Brandenburg, K. (2006). DIAMOND Crystal Impact GbR, Bonn, Germany.
  6. Chantrapromma, S., Nonthason, P., Suwunwong, T. & Fun, H.-K. (2012). Acta Cryst. E68, o830–o831. [DOI] [PMC free article] [PubMed]
  7. Chimenti, F., Carradori, S., Secci, D., Bolasco, A., Bizzarri, B., Chimenti, P., Granese, A., Yáñez, M. & Orallo, F. (2010). Eur. J. Med. Chem. 45, 800–804. [DOI] [PubMed]
  8. Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854.
  9. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  10. Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813004492/hg5293sup1.cif

e-69-0o414-sup1.cif (19KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813004492/hg5293Isup2.hkl

e-69-0o414-Isup2.hkl (170.6KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813004492/hg5293Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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