Abstract
In the title compound, C16H13ClFN3S, the pyrazole ring adopts an envelope conformation with the methine C atom being the flap atom. The chloro- and fluorobenzene rings are twisted out of the plane of the pyrazole ring [dihedral angles = 15.12 (11) and 80.55 (10)°, respectively]. The amine group is orientated towards a ring N atom, forming an intramolecular N—H⋯N hydrogen bond. This H atom also forms a hydrogen bond to the F atom, which along with N—H⋯S hydrogen bonding leads to a supramolecular chain along the c axis. Connections between chains of the type Cl⋯π lead to a layer in the bc plane.
Related literature
For the biological activity of pyrazolin-1-ylthiazoles, see: Abdel-Wahab et al. (2009 ▶, 2012 ▶); Chimenti et al. (2010 ▶). For related structures, see: Chantrapromma et al. (2012 ▶); Abdel-Wahab et al. (2013 ▶).
Experimental
Crystal data
C16H13ClFN3S
M r = 333.80
Monoclinic,
a = 14.5402 (9) Å
b = 11.2700 (8) Å
c = 9.5169 (6) Å
β = 103.850 (6)°
V = 1514.17 (17) Å3
Z = 4
Mo Kα radiation
μ = 0.40 mm−1
T = 295 K
0.40 × 0.30 × 0.20 mm
Data collection
Agilent SuperNova Dual diffractometer with an Atlas detector
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.898, T max = 1.000
10191 measured reflections
3478 independent reflections
2570 reflections with I > 2σ(I)
R int = 0.031
Refinement
R[F 2 > 2σ(F 2)] = 0.041
wR(F 2) = 0.111
S = 1.01
3478 reflections
199 parameters
H-atom parameters constrained
Δρmax = 0.19 e Å−3
Δρmin = −0.28 e Å−3
Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶).
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813004492/hg5293sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813004492/hg5293Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536813004492/hg5293Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
Cg1 is the centroid of the C1–C6 ring.
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N3—H31⋯N1 | 0.88 | 2.24 | 2.617 (2) | 106 |
| N3—H31⋯F1i | 0.88 | 2.41 | 3.257 (2) | 163 |
| N3—H32⋯S1ii | 0.88 | 2.81 | 3.5203 (19) | 139 |
| C4—Cl1⋯Cg1iii | 1.735 (2) | 3.9240 (12) | 4.183 (2) | 86.17 (17) |
Symmetry codes: (i)
; (ii)
; (iii)
.
Acknowledgments
We thank the Ministry of Higher Education (Malaysia) for funding structural studies through the High-Impact Research scheme (UM.C/HIR-MOHE/SC/12).
supplementary crystallographic information
Comment
Pyrazolin-1-ylthiazole derivatives are known to exhibit biological potential (Abdel-Wahab et al., 2012; Abdel-Wahab et al., 2009; Chimenti et al., 2010) and motivated the investigation of the title compound, (I).
The central pyrazolyl ring in (I), Fig. 1, adopts an envelope conformation with the methine-C9 atom being the flap atom. The amine group is orientated towards the ring-N2 atom, forming a hydrogen bond, Table 1, assisted by the near co-planar relationship between the thioamide group and the pyrazolyl ring with the N1—N2—C16—N3 torsion angle being -0.7 (2)°. Both the chloro- and fluoro-benzene rings are twisted out of the least-squares plane through the five-membered ring, forming dihedral angles of 15.12 (11) and 80.55 (10)°, respectively. Quite similar conformations have been observed in related structures bearing two six-membered rings (Chantrapromma et al., 2012; Abdel-Wahab et al., 2013).
In the crystal packing, the amine-H31 atom participating in the intramolecular N—H···N hydrogen bond also forms a hydrogen bond to the F1 atom, Table 1. This interaction along with an N—H···S hydrogen bond leads to a supramolecular chain along the c axis, Table 1. Chains are connected into a layer in the bc plane by Cl···π interactions, Fig. 2 and Table 1. Layers stack along the a axis without specific interactions between them, Fig. 3.
Experimental
To a suspension of (E)-1-(4-chlorophenyl)-3-(4-fluorophenyl)prop-2-en-1-one (1 mmol, 0.26 g) and sodium hydroxide (2.5 mmol, 1.0 g) in ethanol (20 ml), thiosemicarbazide (1.2 mmol, 0.11 g) was added. The mixture was refluxed for 12 h, then left to cool. The solid product was filtered off, washed with ethanol and dried. Recrystallization was by slow evaporation of its DMF solution.
Refinement
Nitrogen- and carbon-bound H-atoms were placed in calculated positions (N—H = 0.88 Å, and C—H 0.93 to 0.98 Å) and were included in the refinement in the riding model approximation, with Uiso(H) = 1.2–1.5Uequiv(N,C).
Figures
Fig. 1.
The molecular structure of (I) showing the atom-labelling scheme and displacement ellipsoids at the 35% probability level.
Fig. 2.
A view of the supramolecular layer in the bc plane in (I) mediated by N—H···S, N—H···F and Cl···π interactions, shown as orange, blue and purple dashed lines, respectively.
Fig. 3.
A view of the crystal packing in projection down the c axis. The N—H···S, N—H···F and Cl···π interactions are shown as orange, blue and purple dashed lines, respectively.
Crystal data
| C16H13ClFN3S | F(000) = 688 |
| Mr = 333.80 | Dx = 1.464 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ybc | Cell parameters from 2717 reflections |
| a = 14.5402 (9) Å | θ = 2.9–27.5° |
| b = 11.2700 (8) Å | µ = 0.40 mm−1 |
| c = 9.5169 (6) Å | T = 295 K |
| β = 103.850 (6)° | Prism, colourless |
| V = 1514.17 (17) Å3 | 0.40 × 0.30 × 0.20 mm |
| Z = 4 |
Data collection
| Agilent SuperNova Dual diffractometer with an Atlas detector | 3478 independent reflections |
| Radiation source: SuperNova (Mo) X-ray Source | 2570 reflections with I > 2σ(I) |
| Mirror monochromator | Rint = 0.031 |
| Detector resolution: 10.4041 pixels mm-1 | θmax = 27.5°, θmin = 2.9° |
| ω scan | h = −15→18 |
| Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) | k = −14→11 |
| Tmin = 0.898, Tmax = 1.000 | l = −12→12 |
| 10191 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.041 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.111 | H-atom parameters constrained |
| S = 1.01 | w = 1/[σ2(Fo2) + (0.0432P)2 + 0.4541P] where P = (Fo2 + 2Fc2)/3 |
| 3478 reflections | (Δ/σ)max = 0.001 |
| 199 parameters | Δρmax = 0.19 e Å−3 |
| 0 restraints | Δρmin = −0.28 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cl1 | 0.54931 (5) | 0.65490 (7) | 0.48095 (8) | 0.0811 (3) | |
| S1 | −0.01110 (4) | 1.16708 (5) | −0.15948 (5) | 0.04527 (17) | |
| F1 | 0.27125 (11) | 1.14248 (13) | −0.60633 (13) | 0.0658 (4) | |
| N1 | 0.20984 (11) | 1.00001 (15) | 0.08010 (15) | 0.0379 (4) | |
| N2 | 0.13525 (11) | 1.03202 (14) | −0.03592 (15) | 0.0368 (4) | |
| N3 | 0.10065 (13) | 1.17944 (16) | 0.10514 (17) | 0.0463 (4) | |
| H31 | 0.1483 | 1.1542 | 0.1741 | 0.056* | |
| H32 | 0.0669 | 1.2407 | 0.1207 | 0.056* | |
| C1 | 0.31834 (13) | 0.83907 (18) | 0.1544 (2) | 0.0381 (4) | |
| C2 | 0.37595 (15) | 0.9020 (2) | 0.2678 (2) | 0.0498 (5) | |
| H2 | 0.3661 | 0.9829 | 0.2772 | 0.060* | |
| C3 | 0.44754 (16) | 0.8454 (2) | 0.3665 (2) | 0.0559 (6) | |
| H3 | 0.4860 | 0.8879 | 0.4419 | 0.067* | |
| C4 | 0.46163 (14) | 0.7261 (2) | 0.3529 (2) | 0.0505 (6) | |
| C5 | 0.40755 (15) | 0.6624 (2) | 0.2408 (3) | 0.0533 (6) | |
| H5 | 0.4187 | 0.5819 | 0.2314 | 0.064* | |
| C6 | 0.33602 (14) | 0.7194 (2) | 0.1414 (2) | 0.0476 (5) | |
| H6 | 0.2993 | 0.6766 | 0.0647 | 0.057* | |
| C7 | 0.23925 (13) | 0.89711 (18) | 0.05223 (19) | 0.0366 (4) | |
| C8 | 0.18302 (14) | 0.84371 (17) | −0.08689 (19) | 0.0394 (4) | |
| H8A | 0.1424 | 0.7802 | −0.0687 | 0.047* | |
| H8B | 0.2242 | 0.8136 | −0.1452 | 0.047* | |
| C9 | 0.12464 (13) | 0.95057 (17) | −0.15998 (18) | 0.0365 (4) | |
| H9 | 0.0581 | 0.9282 | −0.1966 | 0.044* | |
| C10 | 0.16342 (12) | 1.00448 (17) | −0.27969 (17) | 0.0330 (4) | |
| C11 | 0.23938 (13) | 1.08168 (18) | −0.24895 (19) | 0.0403 (5) | |
| H11 | 0.2656 | 1.1032 | −0.1534 | 0.048* | |
| C12 | 0.27723 (14) | 1.12774 (19) | −0.3580 (2) | 0.0442 (5) | |
| H12 | 0.3288 | 1.1791 | −0.3370 | 0.053* | |
| C13 | 0.23618 (15) | 1.09503 (19) | −0.4978 (2) | 0.0430 (5) | |
| C14 | 0.16111 (15) | 1.01890 (19) | −0.53370 (19) | 0.0463 (5) | |
| H14 | 0.1350 | 0.9983 | −0.6296 | 0.056* | |
| C15 | 0.12497 (14) | 0.97331 (18) | −0.42252 (19) | 0.0400 (4) | |
| H15 | 0.0741 | 0.9210 | −0.4442 | 0.048* | |
| C16 | 0.07946 (13) | 1.12480 (17) | −0.02300 (19) | 0.0352 (4) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cl1 | 0.0556 (4) | 0.0764 (5) | 0.0967 (5) | 0.0061 (3) | −0.0106 (3) | 0.0318 (4) |
| S1 | 0.0410 (3) | 0.0485 (4) | 0.0446 (3) | 0.0047 (2) | 0.0067 (2) | 0.0045 (2) |
| F1 | 0.0922 (10) | 0.0679 (10) | 0.0444 (7) | −0.0139 (8) | 0.0304 (7) | 0.0066 (6) |
| N1 | 0.0384 (8) | 0.0440 (10) | 0.0306 (7) | 0.0025 (7) | 0.0068 (6) | 0.0007 (7) |
| N2 | 0.0406 (8) | 0.0402 (10) | 0.0295 (7) | 0.0046 (7) | 0.0080 (6) | −0.0024 (6) |
| N3 | 0.0537 (10) | 0.0438 (10) | 0.0409 (9) | 0.0073 (8) | 0.0106 (7) | −0.0069 (7) |
| C1 | 0.0368 (10) | 0.0409 (12) | 0.0380 (9) | 0.0007 (8) | 0.0116 (7) | 0.0033 (8) |
| C2 | 0.0544 (13) | 0.0427 (13) | 0.0485 (12) | 0.0034 (10) | 0.0045 (9) | −0.0004 (9) |
| C3 | 0.0520 (13) | 0.0587 (16) | 0.0488 (12) | −0.0014 (11) | −0.0041 (10) | 0.0004 (10) |
| C4 | 0.0349 (10) | 0.0542 (15) | 0.0606 (13) | 0.0006 (10) | 0.0078 (9) | 0.0182 (11) |
| C5 | 0.0412 (11) | 0.0397 (13) | 0.0768 (15) | 0.0024 (10) | 0.0094 (10) | 0.0066 (11) |
| C6 | 0.0400 (11) | 0.0449 (13) | 0.0565 (12) | −0.0026 (9) | 0.0091 (9) | −0.0029 (10) |
| C7 | 0.0360 (10) | 0.0397 (12) | 0.0361 (9) | −0.0015 (8) | 0.0129 (7) | 0.0007 (8) |
| C8 | 0.0462 (11) | 0.0372 (11) | 0.0355 (9) | −0.0004 (9) | 0.0111 (8) | −0.0002 (8) |
| C9 | 0.0364 (9) | 0.0401 (11) | 0.0324 (9) | −0.0022 (8) | 0.0074 (7) | −0.0048 (8) |
| C10 | 0.0329 (9) | 0.0343 (10) | 0.0307 (8) | 0.0027 (8) | 0.0056 (7) | −0.0015 (7) |
| C11 | 0.0412 (10) | 0.0458 (12) | 0.0313 (9) | −0.0044 (9) | 0.0033 (7) | −0.0028 (8) |
| C12 | 0.0431 (11) | 0.0462 (13) | 0.0437 (11) | −0.0074 (9) | 0.0114 (8) | −0.0010 (9) |
| C13 | 0.0575 (12) | 0.0397 (12) | 0.0354 (10) | 0.0030 (10) | 0.0181 (9) | 0.0038 (8) |
| C14 | 0.0605 (13) | 0.0466 (13) | 0.0289 (9) | −0.0014 (10) | 0.0053 (8) | −0.0020 (8) |
| C15 | 0.0440 (11) | 0.0380 (11) | 0.0350 (9) | −0.0046 (9) | 0.0037 (8) | −0.0030 (8) |
| C16 | 0.0378 (9) | 0.0351 (11) | 0.0358 (9) | −0.0042 (8) | 0.0148 (7) | 0.0024 (8) |
Geometric parameters (Å, º)
| Cl1—C4 | 1.735 (2) | C5—H5 | 0.9300 |
| S1—C16 | 1.6821 (19) | C6—H6 | 0.9300 |
| F1—C13 | 1.365 (2) | C7—C8 | 1.505 (2) |
| N1—C7 | 1.285 (2) | C8—C9 | 1.540 (3) |
| N1—N2 | 1.397 (2) | C8—H8A | 0.9700 |
| N2—C16 | 1.347 (2) | C8—H8B | 0.9700 |
| N2—C9 | 1.474 (2) | C9—C10 | 1.514 (3) |
| N3—C16 | 1.335 (2) | C9—H9 | 0.9800 |
| N3—H31 | 0.8800 | C10—C11 | 1.381 (3) |
| N3—H32 | 0.8800 | C10—C15 | 1.386 (2) |
| C1—C6 | 1.384 (3) | C11—C12 | 1.386 (3) |
| C1—C2 | 1.392 (3) | C11—H11 | 0.9300 |
| C1—C7 | 1.470 (3) | C12—C13 | 1.373 (3) |
| C2—C3 | 1.380 (3) | C12—H12 | 0.9300 |
| C2—H2 | 0.9300 | C13—C14 | 1.366 (3) |
| C3—C4 | 1.371 (3) | C14—C15 | 1.388 (3) |
| C3—H3 | 0.9300 | C14—H14 | 0.9300 |
| C4—C5 | 1.367 (3) | C15—H15 | 0.9300 |
| C5—C6 | 1.385 (3) | ||
| C7—N1—N2 | 107.67 (15) | C7—C8—H8B | 111.4 |
| C16—N2—N1 | 119.92 (15) | C9—C8—H8B | 111.4 |
| C16—N2—C9 | 127.35 (15) | H8A—C8—H8B | 109.2 |
| N1—N2—C9 | 112.63 (14) | N2—C9—C10 | 111.49 (15) |
| C16—N3—H31 | 120.0 | N2—C9—C8 | 100.63 (13) |
| C16—N3—H32 | 120.0 | C10—C9—C8 | 112.91 (15) |
| H31—N3—H32 | 120.0 | N2—C9—H9 | 110.5 |
| C6—C1—C2 | 118.41 (18) | C10—C9—H9 | 110.5 |
| C6—C1—C7 | 120.48 (18) | C8—C9—H9 | 110.5 |
| C2—C1—C7 | 121.10 (19) | C11—C10—C15 | 118.82 (17) |
| C3—C2—C1 | 120.5 (2) | C11—C10—C9 | 121.08 (15) |
| C3—C2—H2 | 119.7 | C15—C10—C9 | 120.06 (17) |
| C1—C2—H2 | 119.7 | C10—C11—C12 | 121.19 (17) |
| C4—C3—C2 | 119.7 (2) | C10—C11—H11 | 119.4 |
| C4—C3—H3 | 120.2 | C12—C11—H11 | 119.4 |
| C2—C3—H3 | 120.2 | C13—C12—C11 | 117.83 (19) |
| C3—C4—C5 | 121.16 (19) | C13—C12—H12 | 121.1 |
| C3—C4—Cl1 | 119.23 (17) | C11—C12—H12 | 121.1 |
| C5—C4—Cl1 | 119.61 (19) | C14—C13—F1 | 118.55 (17) |
| C4—C5—C6 | 119.1 (2) | C14—C13—C12 | 123.16 (18) |
| C4—C5—H5 | 120.4 | F1—C13—C12 | 118.28 (19) |
| C6—C5—H5 | 120.4 | C13—C14—C15 | 117.89 (17) |
| C5—C6—C1 | 121.1 (2) | C13—C14—H14 | 121.1 |
| C5—C6—H6 | 119.5 | C15—C14—H14 | 121.1 |
| C1—C6—H6 | 119.5 | C10—C15—C14 | 121.10 (18) |
| N1—C7—C1 | 120.74 (17) | C10—C15—H15 | 119.4 |
| N1—C7—C8 | 113.88 (16) | C14—C15—H15 | 119.4 |
| C1—C7—C8 | 125.33 (18) | N3—C16—N2 | 115.42 (16) |
| C7—C8—C9 | 102.08 (15) | N3—C16—S1 | 122.79 (16) |
| C7—C8—H8A | 111.4 | N2—C16—S1 | 121.78 (14) |
| C9—C8—H8A | 111.4 | ||
| C7—N1—N2—C16 | 167.15 (16) | C16—N2—C9—C8 | −159.69 (18) |
| C7—N1—N2—C9 | −9.4 (2) | N1—N2—C9—C8 | 16.59 (19) |
| C6—C1—C2—C3 | −1.4 (3) | C7—C8—C9—N2 | −16.22 (18) |
| C7—C1—C2—C3 | 177.32 (19) | C7—C8—C9—C10 | 102.72 (17) |
| C1—C2—C3—C4 | −0.3 (3) | N2—C9—C10—C11 | 31.9 (2) |
| C2—C3—C4—C5 | 1.8 (4) | C8—C9—C10—C11 | −80.5 (2) |
| C2—C3—C4—Cl1 | −177.91 (17) | N2—C9—C10—C15 | −150.42 (17) |
| C3—C4—C5—C6 | −1.4 (4) | C8—C9—C10—C15 | 97.1 (2) |
| Cl1—C4—C5—C6 | 178.23 (17) | C15—C10—C11—C12 | −0.1 (3) |
| C4—C5—C6—C1 | −0.3 (3) | C9—C10—C11—C12 | 177.60 (18) |
| C2—C1—C6—C5 | 1.7 (3) | C10—C11—C12—C13 | 0.6 (3) |
| C7—C1—C6—C5 | −177.00 (19) | C11—C12—C13—C14 | −0.7 (3) |
| N2—N1—C7—C1 | 179.67 (16) | C11—C12—C13—F1 | 178.21 (18) |
| N2—N1—C7—C8 | −2.9 (2) | F1—C13—C14—C15 | −178.68 (19) |
| C6—C1—C7—N1 | 165.27 (18) | C12—C13—C14—C15 | 0.2 (3) |
| C2—C1—C7—N1 | −13.4 (3) | C11—C10—C15—C14 | −0.4 (3) |
| C6—C1—C7—C8 | −11.9 (3) | C9—C10—C15—C14 | −178.12 (18) |
| C2—C1—C7—C8 | 169.41 (19) | C13—C14—C15—C10 | 0.3 (3) |
| N1—C7—C8—C9 | 12.9 (2) | N1—N2—C16—N3 | −0.7 (2) |
| C1—C7—C8—C9 | −169.76 (17) | C9—N2—C16—N3 | 175.38 (17) |
| C16—N2—C9—C10 | 80.3 (2) | N1—N2—C16—S1 | 179.89 (13) |
| N1—N2—C9—C10 | −103.38 (17) | C9—N2—C16—S1 | −4.1 (3) |
Hydrogen-bond geometry (Å, º)
Cg1 is the centroid of the C1–C6 ring.
| D—H···A | D—H | H···A | D···A | D—H···A |
| N3—H31···N1 | 0.88 | 2.24 | 2.617 (2) | 106 |
| N3—H31···F1i | 0.88 | 2.41 | 3.257 (2) | 163 |
| N3—H32···S1ii | 0.88 | 2.81 | 3.5203 (19) | 139 |
| C4—Cl1···Cg1iii | 1.74 (1) | 3.92 (1) | 4.183 (2) | 86 (1) |
Symmetry codes: (i) x, y, z+1; (ii) x, −y+5/2, z+1/2; (iii) x, −y+1/2, z−1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HG5293).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813004492/hg5293sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813004492/hg5293Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536813004492/hg5293Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report



