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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2013 Feb 23;69(Pt 3):m170–m171. doi: 10.1107/S1600536813004650

cis-Chlorido(ethyl­amine)­bis­(propane-1,3-diamine)­cobalt(III) dichloride

Velusamy Maheshwaran a, Viswanathan Thiruselvam a, Munisamy Manjunathan b, Krishnamoorthy Anbalagan b, Mondikalipudur Nanjappa Gounder Ponnuswamy a,*
PMCID: PMC3588535  PMID: 23476511

Abstract

In the title compound, [CoCl(C2H7N)(C3H10N2)2]Cl2, the CoIII ion has a distorted octa­hedral coordination environment and is surrounded by four N atoms in the equatorial plane, with the other N and Cl atoms occupying the axial positions. The crystal packing is stabilized by N—H⋯Cl hydrogen bonds, forming a layered arrangement parallel to (1-10).

Related literature  

For supramolecular structures, see: Desiraju (1995); Khlobystov et al. (2001); Lehn (1995); Seo et al. (2000). For CoIII complexes, see: Chang et al. (2010). For related and comparable structures, see: Anbalagan et al. (2009); Lee et al. (2007); Ramesh et al. (2008); Ravichandran et al. (2009). For the preparation of (1,3-diamino­propane)­cobalt(III), see: Bailar & Work (1946).graphic file with name e-69-0m170-scheme1.jpg

Experimental  

Crystal data  

  • [CoCl(C2H7N)(C3H10N2)2]Cl2

  • M r = 358.63

  • Triclinic, Inline graphic

  • a = 7.8847 (4) Å

  • b = 8.0627 (4) Å

  • c = 12.6526 (5) Å

  • α = 102.780 (3)°

  • β = 99.936 (4)°

  • γ = 92.580 (4)°

  • V = 769.76 (6) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 1.62 mm−1

  • T = 293 K

  • 0.45 × 0.35 × 0.35 mm

Data collection  

  • Oxford Diffraction Xcalibur Eos diffractometer

  • Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) T min = 0.600, T max = 1.000

  • 4965 measured reflections

  • 2711 independent reflections

  • 2299 reflections with I > 2σ(I)

  • R int = 0.018

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.025

  • wR(F 2) = 0.060

  • S = 0.99

  • 2711 reflections

  • 194 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.30 e Å−3

  • Δρmin = −0.35 e Å−3

Data collection: CrysAlis CCD (Oxford Diffraction, 2009); cell refinement: CrysAlis RED (Oxford Diffraction, 2009); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and PLATON (Spek, 2009); software used to prepare material for publication: PLATON.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813004650/bt6888sup1.cif

e-69-0m170-sup1.cif (19.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813004650/bt6888Isup2.hkl

e-69-0m170-Isup2.hkl (133.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H2D⋯Cl2i 0.84 (2) 2.77 (2) 3.5033 (19) 145.6 (18)
N3—H3C⋯Cl2i 0.79 (2) 2.49 (2) 3.275 (2) 168 (2)
N1—H1D⋯Cl2ii 0.82 (2) 2.52 (2) 3.3278 (19) 173.2 (18)
N3—H3D⋯Cl2ii 0.87 (2) 2.72 (2) 3.472 (2) 145.6 (18)
N4—H4C⋯Cl3iii 0.88 (2) 2.40 (2) 3.261 (2) 163.7 (19)
N5—H5D⋯Cl3iii 0.82 (2) 2.57 (2) 3.329 (2) 154 (2)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

KA is thankful to the CSIR, New Delhi (Lr: No. 01 (2570)/12/EMR-II/3.4.2012) for financial support through a major research project. The authors are thankful to the Department of Chemistry, Pondicherry University, for the single-crystal XRD instrumentation facility.

supplementary crystallographic information

Comment

In recent years, considerable effort has been dedicated to the design and synthesis of supramolecular architectures of coordination complexes (Lehn, 1995; Khlobystov et al.,2001). The primary reason for the interest in such complexes is their new and versatile topologies and potential applications in functional materials (Desiraju, 1995; Seo et al., 2000).

The interaction of transition metal polyamine complexes of cobalt(III) with DNA has received considerable attention in the recent years. Using mixed ligand complexes, it is possible to systematically vary parameters of interest by changing the properties of the interacting units either by the use of suitable substituents or simply by changing the nature of ancillary ligand.

In addition, cobalt(III) complexes have received a sustained high level of attention due to their relevance in various redox processes in biological systems and act as promising agents for antitumor, anthelmintic, antiparasitic, antibiotic and antimicrobial activities, as well as their multiple applications in fields of medicine and drug delivery (Chang et al., 2010). Against this background and to ascertain the molecular structure and conformation of the title compound, the crystal structure determination has been carried out.

The ORTEP plot of the molecule is shown in Fig. 1. The molecular geometry is not a perfect octahedron. The metal centre is surrounded by four N atoms in an equatorial plane, with the other N and Cl atoms occupying the axial positions.

The bond lengths [Co—N] and [Co—Cl] are comparable with the values reported in the literature (Lee et al., 2007; Ramesh et al., 2008; Anbalagan et al., 2009; Ravichandran et al., 2009).

The packing of the molecules viewed down the a axis is shown in Fig. 2. The packing is stabilized by N—H···Cl and N—H···N types of inter- and intramolecular interaction.

Experimental

2 grams of trans-[CoIII(tn)2Cl2]Cl solid was made in the path using 3–4 drops of water. To the solid mass, about 0.12M ethyl amine (EtNH2) was dropped for 20 min and mixed well. The grinding was continued until the colour turned dull green to red (Bailar & Work, 1946). The reaction mixture was set aside until no further change was observed and the product was allowed to stand overnight. Finally, the solid was washed. The final solid was dissolved in 5–10 ml of water pre-heated to 70°C and allowed to crystallize using hot acidified water. Finally Microcrystalline pink color crystal was retrieved (yield 0.85 g). The crystals were filtered, washed with ethanol and dried over vacuum. X-ray quality crystals were obtained by recrystallization from hot acidified distilled water.

Refinement

All H atoms were discernable in a difference map. C-bound H atoms were positioned geometrically (C–H =0.93–0.97 Å) and allowed to ride on their parent atoms, with Uiso(H) =1.5Ueq(C) for methyl H atoms and 1.2Ueq(C) for all other H atoms. The H atoms bonded to N were freely refined.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, showing the atomic numbering and displacement ellipsoids drawn at 30% probability level.

Fig. 2.

Fig. 2.

The packing of the molecules viewed down a axis.

Crystal data

[CoCl(C2H7N)(C3H10N2)2]Cl2 Z = 2
Mr = 358.63 F(000) = 376
Triclinic, P1 Dx = 1.547 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 7.8847 (4) Å Cell parameters from 2784 reflections
b = 8.0627 (4) Å θ = 3.4–29.0°
c = 12.6526 (5) Å µ = 1.62 mm1
α = 102.780 (3)° T = 293 K
β = 99.936 (4)° Block, yellow
γ = 92.580 (4)° 0.45 × 0.35 × 0.35 mm
V = 769.76 (6) Å3

Data collection

Oxford Diffraction Xcalibur Eos diffractometer 2711 independent reflections
Radiation source: fine-focus sealed tube 2299 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.018
ω scans θmax = 25.0°, θmin = 2.8°
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) h = −9→9
Tmin = 0.600, Tmax = 1.000 k = −9→9
4965 measured reflections l = −15→12

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.060 H atoms treated by a mixture of independent and constrained refinement
S = 0.99 w = 1/[σ2(Fo2) + (0.036P)2] where P = (Fo2 + 2Fc2)/3
2711 reflections (Δ/σ)max = 0.001
194 parameters Δρmax = 0.30 e Å3
0 restraints Δρmin = −0.35 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.7176 (3) 0.6154 (3) 0.98937 (17) 0.0278 (5)
H1A 0.7705 0.6146 1.0644 0.033*
H1B 0.6287 0.5210 0.9632 0.033*
C2 0.6360 (3) 0.7792 (3) 0.98931 (16) 0.0289 (5)
H2A 0.7265 0.8717 1.0056 0.035*
H2B 0.5691 0.8005 1.0477 0.035*
C3 0.5193 (3) 0.7803 (3) 0.88121 (16) 0.0253 (5)
H3A 0.4308 0.6858 0.8637 0.030*
H3B 0.4622 0.8853 0.8896 0.030*
C4 1.0645 (3) 0.9053 (3) 0.74479 (16) 0.0364 (6)
H4A 1.1607 0.8388 0.7295 0.044*
H4B 1.1112 1.0209 0.7820 0.044*
C5 0.9486 (4) 0.9081 (3) 0.63747 (19) 0.0460 (7)
H5A 0.8456 0.9630 0.6526 0.055*
H5B 1.0082 0.9744 0.5975 0.055*
C6 0.8976 (3) 0.7309 (3) 0.56745 (17) 0.0359 (6)
H6A 0.8494 0.7373 0.4927 0.043*
H6B 0.9996 0.6683 0.5650 0.043*
C7 0.4777 (3) 0.3755 (3) 0.7108 (2) 0.0333 (5)
H7A 0.4207 0.4316 0.6557 0.040*
H7B 0.4483 0.4289 0.7811 0.040*
C8 0.4119 (3) 0.1879 (3) 0.6799 (2) 0.0432 (7)
H8A 0.2888 0.1776 0.6750 0.065*
H8B 0.4656 0.1326 0.7353 0.065*
H8C 0.4396 0.1349 0.6100 0.065*
N1 0.8505 (2) 0.5908 (2) 0.91895 (14) 0.0205 (4)
N2 0.6139 (2) 0.7664 (2) 0.78807 (14) 0.0202 (4)
N3 0.9726 (3) 0.8316 (2) 0.81887 (14) 0.0210 (4)
N4 0.7690 (3) 0.6375 (3) 0.61050 (14) 0.0223 (4)
N5 0.6662 (2) 0.3992 (2) 0.71863 (16) 0.0222 (4)
Cl1 1.03872 (7) 0.47044 (7) 0.74016 (4) 0.03006 (14)
Cl2 0.79985 (7) 0.17837 (6) 0.92229 (4) 0.02905 (14)
Cl3 0.36383 (7) 0.73553 (7) 0.55285 (4) 0.03125 (14)
Co1 0.80944 (3) 0.62246 (3) 0.766006 (19) 0.01506 (9)
H2C 0.543 (3) 0.741 (3) 0.7294 (17) 0.024 (6)*
H3C 0.926 (3) 0.908 (3) 0.8502 (17) 0.020 (7)*
H3D 1.052 (3) 0.797 (3) 0.8632 (17) 0.022 (6)*
H4D 0.685 (3) 0.678 (3) 0.5978 (17) 0.019 (7)*
H1C 0.882 (3) 0.490 (3) 0.9103 (16) 0.020 (6)*
H4C 0.756 (3) 0.532 (3) 0.5693 (16) 0.020 (6)*
H2D 0.652 (3) 0.867 (3) 0.7894 (17) 0.030 (7)*
H5D 0.693 (3) 0.360 (3) 0.659 (2) 0.037 (7)*
H1D 0.937 (3) 0.652 (3) 0.9535 (17) 0.024 (6)*
H5C 0.717 (3) 0.339 (3) 0.763 (2) 0.042 (8)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0319 (13) 0.0330 (12) 0.0235 (11) 0.0038 (10) 0.0115 (10) 0.0120 (10)
C2 0.0376 (14) 0.0307 (12) 0.0203 (11) 0.0054 (10) 0.0138 (10) 0.0030 (9)
C3 0.0241 (12) 0.0242 (11) 0.0291 (11) 0.0077 (9) 0.0117 (9) 0.0033 (9)
C4 0.0341 (14) 0.0469 (15) 0.0264 (12) −0.0202 (12) 0.0066 (11) 0.0086 (11)
C5 0.0562 (17) 0.0496 (16) 0.0346 (13) −0.0224 (14) 0.0048 (12) 0.0233 (12)
C6 0.0319 (13) 0.0576 (16) 0.0186 (11) −0.0099 (12) 0.0059 (10) 0.0113 (11)
C7 0.0252 (12) 0.0287 (12) 0.0428 (13) −0.0039 (10) 0.0049 (11) 0.0037 (10)
C8 0.0386 (15) 0.0320 (14) 0.0556 (16) −0.0137 (11) 0.0004 (13) 0.0130 (12)
N1 0.0189 (10) 0.0188 (10) 0.0230 (9) 0.0011 (8) 0.0022 (8) 0.0047 (8)
N2 0.0198 (10) 0.0212 (10) 0.0184 (9) 0.0030 (8) 0.0005 (8) 0.0039 (8)
N3 0.0210 (10) 0.0211 (10) 0.0206 (9) −0.0018 (8) 0.0032 (8) 0.0051 (8)
N4 0.0196 (11) 0.0259 (11) 0.0188 (9) −0.0004 (9) 0.0013 (8) 0.0021 (8)
N5 0.0224 (10) 0.0205 (9) 0.0213 (10) −0.0017 (8) 0.0027 (8) 0.0016 (8)
Cl1 0.0230 (3) 0.0349 (3) 0.0332 (3) 0.0107 (2) 0.0084 (2) 0.0057 (2)
Cl2 0.0321 (3) 0.0204 (3) 0.0321 (3) −0.0007 (2) 0.0000 (2) 0.0061 (2)
Cl3 0.0277 (3) 0.0351 (3) 0.0248 (3) 0.0028 (2) 0.0000 (2) −0.0022 (2)
Co1 0.01382 (15) 0.01541 (15) 0.01497 (15) 0.00020 (10) 0.00225 (10) 0.00205 (10)

Geometric parameters (Å, º)

C1—N1 1.481 (3) C7—H7A 0.9700
C1—C2 1.495 (3) C7—H7B 0.9700
C1—H1A 0.9700 C8—H8A 0.9600
C1—H1B 0.9700 C8—H8B 0.9600
C2—C3 1.513 (3) C8—H8C 0.9600
C2—H2A 0.9700 N1—Co1 1.9811 (17)
C2—H2B 0.9700 N1—H1C 0.85 (2)
C3—N2 1.486 (2) N1—H1D 0.82 (2)
C3—H3A 0.9700 N2—Co1 1.9921 (18)
C3—H3B 0.9700 N2—H2C 0.83 (2)
C4—N3 1.483 (2) N2—H2D 0.84 (2)
C4—C5 1.506 (3) N3—Co1 1.9887 (17)
C4—H4A 0.9700 N3—H3C 0.79 (2)
C4—H4B 0.9700 N3—H3D 0.87 (2)
C5—C6 1.502 (3) N4—Co1 1.9698 (18)
C5—H5A 0.9700 N4—H4D 0.76 (2)
C5—H5B 0.9700 N4—H4C 0.88 (2)
C6—N4 1.482 (3) N5—Co1 1.9953 (16)
C6—H6A 0.9700 N5—H5D 0.82 (2)
C6—H6B 0.9700 N5—H5C 0.88 (3)
C7—N5 1.474 (3) Cl1—Co1 2.2591 (6)
C7—C8 1.519 (3)
N1—C1—C2 112.37 (17) H8B—C8—H8C 109.5
N1—C1—H1A 109.1 C1—N1—Co1 122.70 (14)
C2—C1—H1A 109.1 C1—N1—H1C 111.0 (14)
N1—C1—H1B 109.1 Co1—N1—H1C 102.2 (13)
C2—C1—H1B 109.1 C1—N1—H1D 106.7 (15)
H1A—C1—H1B 107.9 Co1—N1—H1D 108.1 (14)
C1—C2—C3 113.66 (17) H1C—N1—H1D 105 (2)
C1—C2—H2A 108.8 C3—N2—Co1 124.93 (14)
C3—C2—H2A 108.8 C3—N2—H2C 108.5 (15)
C1—C2—H2B 108.8 Co1—N2—H2C 106.5 (15)
C3—C2—H2B 108.8 C3—N2—H2D 106.4 (15)
H2A—C2—H2B 107.7 Co1—N2—H2D 105.9 (16)
N2—C3—C2 112.96 (17) H2C—N2—H2D 102 (2)
N2—C3—H3A 109.0 C4—N3—Co1 122.95 (13)
C2—C3—H3A 109.0 C4—N3—H3C 105.6 (15)
N2—C3—H3B 109.0 Co1—N3—H3C 109.9 (15)
C2—C3—H3B 109.0 C4—N3—H3D 105.5 (14)
H3A—C3—H3B 107.8 Co1—N3—H3D 100.6 (14)
N3—C4—C5 112.45 (18) H3C—N3—H3D 112 (2)
N3—C4—H4A 109.1 C6—N4—Co1 120.95 (14)
C5—C4—H4A 109.1 C6—N4—H4D 105.3 (16)
N3—C4—H4B 109.1 Co1—N4—H4D 109.1 (16)
C5—C4—H4B 109.1 C6—N4—H4C 105.5 (13)
H4A—C4—H4B 107.8 Co1—N4—H4C 107.6 (13)
C6—C5—C4 111.3 (2) H4D—N4—H4C 108 (2)
C6—C5—H5A 109.4 C7—N5—Co1 125.65 (15)
C4—C5—H5A 109.4 C7—N5—H5D 110.9 (17)
C6—C5—H5B 109.4 Co1—N5—H5D 100.9 (16)
C4—C5—H5B 109.4 C7—N5—H5C 109.0 (16)
H5A—C5—H5B 108.0 Co1—N5—H5C 103.4 (16)
N4—C6—C5 111.91 (19) H5D—N5—H5C 105 (2)
N4—C6—H6A 109.2 N4—Co1—N1 176.20 (8)
C5—C6—H6A 109.2 N4—Co1—N3 94.63 (7)
N4—C6—H6B 109.2 N1—Co1—N3 88.27 (8)
C5—C6—H6B 109.2 N4—Co1—N2 88.57 (8)
H6A—C6—H6B 107.9 N1—Co1—N2 93.94 (7)
N5—C7—C8 111.9 (2) N3—Co1—N2 89.27 (9)
N5—C7—H7A 109.2 N4—Co1—N5 88.27 (8)
C8—C7—H7A 109.2 N1—Co1—N5 88.62 (8)
N5—C7—H7B 109.2 N3—Co1—N5 173.98 (9)
C8—C7—H7B 109.2 N2—Co1—N5 96.09 (8)
H7A—C7—H7B 107.9 N4—Co1—Cl1 90.49 (7)
C7—C8—H8A 109.5 N1—Co1—Cl1 87.13 (6)
C7—C8—H8B 109.5 N3—Co1—Cl1 88.21 (7)
H8A—C8—H8B 109.5 N2—Co1—Cl1 177.23 (6)
C7—C8—H8C 109.5 N5—Co1—Cl1 86.49 (6)
H8A—C8—H8C 109.5
N1—C1—C2—C3 70.5 (2) C1—N1—Co1—N5 −75.46 (17)
C1—C2—C3—N2 −64.4 (2) C1—N1—Co1—Cl1 −162.02 (16)
N3—C4—C5—C6 −68.7 (3) C4—N3—Co1—N4 −20.0 (2)
C4—C5—C6—N4 73.7 (3) C4—N3—Co1—N1 157.5 (2)
C2—C1—N1—Co1 −48.3 (2) C4—N3—Co1—N2 −108.52 (19)
C2—C3—N2—Co1 37.7 (2) C4—N3—Co1—Cl1 70.34 (19)
C5—C4—N3—Co1 43.3 (3) C3—N2—Co1—N4 161.39 (17)
C5—C6—N4—Co1 −51.5 (3) C3—N2—Co1—N1 −15.75 (17)
C8—C7—N5—Co1 −175.91 (15) C3—N2—Co1—N3 −103.96 (17)
C6—N4—Co1—N3 23.7 (2) C3—N2—Co1—N5 73.28 (17)
C6—N4—Co1—N2 112.81 (19) C7—N5—Co1—N4 −89.73 (19)
C6—N4—Co1—N5 −151.1 (2) C7—N5—Co1—N1 92.47 (19)
C6—N4—Co1—Cl1 −64.58 (19) C7—N5—Co1—N2 −1.35 (19)
C1—N1—Co1—N3 109.69 (17) C7—N5—Co1—Cl1 179.67 (18)
C1—N1—Co1—N2 20.54 (17)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N2—H2D···Cl2i 0.84 (2) 2.77 (2) 3.5033 (19) 145.6 (18)
N3—H3C···Cl2i 0.79 (2) 2.49 (2) 3.275 (2) 168 (2)
N1—H1D···Cl2ii 0.82 (2) 2.52 (2) 3.3278 (19) 173.2 (18)
N3—H3D···Cl2ii 0.87 (2) 2.72 (2) 3.472 (2) 145.6 (18)
N4—H4C···Cl3iii 0.88 (2) 2.40 (2) 3.261 (2) 163.7 (19)
N5—H5D···Cl3iii 0.82 (2) 2.57 (2) 3.329 (2) 154 (2)

Symmetry codes: (i) x, y+1, z; (ii) −x+2, −y+1, −z+2; (iii) −x+1, −y+1, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BT6888).

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813004650/bt6888sup1.cif

e-69-0m170-sup1.cif (19.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813004650/bt6888Isup2.hkl

e-69-0m170-Isup2.hkl (133.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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