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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Nov 3;68(Pt 12):o3255. doi: 10.1107/S1600536812042389

N′-[(E)-2-Hy­droxy-5-meth­oxy­benzyl­idene]-2-meth­oxy­benzohydrazide

M Syukri Baharudin a, Muhammad Taha a, Nor Hadiani Ismail b, Syed Adnan Ali Shah a,c, Sammer Yousuf d,*
PMCID: PMC3588809  PMID: 23468774

Abstract

The mol­ecule of the title compound, C16H16N2O4, adopts an E conformation about the azomethine C=N double bond. The dihedral angle formed by the benzene rings is 18.88 (9)°. The mol­ecular conformation is stabilized by an intra­molecular O—H⋯N hydrogen bond, which forms an S(6) ring. In the crystal, the mol­ecules are linked into chains parallel to [001] by N—H⋯O hydrogen bonds. The chains are further connected into a three-dimensional network by π–π stacking inter­actions with centroid–centroid distances of 3.6538 (10) and 3.8995 (11) Å.

Related literature  

For the applications and biological activity of Schiff bases, see: Panneerselvam et al. (2009); Khan et al. (2009); Jarahpour et al. (2007); Pandeya et al. (1999). For related structures, see: Taha et al. (2012a ,b ); Lu et al. (2008).graphic file with name e-68-o3255-scheme1.jpg

Experimental  

Crystal data  

  • C16H16N2O4

  • M r = 300.31

  • Monoclinic, Inline graphic

  • a = 14.5775 (13) Å

  • b = 11.0798 (11) Å

  • c = 9.5893 (9) Å

  • β = 99.872 (2)°

  • V = 1525.9 (2) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 273 K

  • 0.59 × 0.45 × 0.39 mm

Data collection  

  • Bruker SMART APEX CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2000) T min = 0.946, T max = 0.964

  • 8886 measured reflections

  • 2767 independent reflections

  • 2210 reflections with I > 2σ(I)

  • R int = 0.016

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.041

  • wR(F 2) = 0.124

  • S = 1.04

  • 2767 reflections

  • 208 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.15 e Å−3

  • Δρmin = −0.15 e Å−3

Data collection: SMART (Bruker, 2000); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995) and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812042389/rz5014sup1.cif

e-68-o3255-sup1.cif (19.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812042389/rz5014Isup2.hkl

e-68-o3255-Isup2.hkl (135.9KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812042389/rz5014Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1A⋯N1 0.83 (2) 1.87 (2) 2.605 (2) 146.0 (19)
N2—H2A⋯O3i 0.835 (17) 2.051 (17) 2.8258 (17) 154.2 (15)

Symmetry code: (i) Inline graphic.

supplementary crystallographic information

Comment

Applications of Schiff bases are reported in different fields of chemistry with a broad range of biological activities (Panneerselvam et al., 2009, Khan et al., 2009, Jarahpour et al., 2007, Pandeya et al., 1999). The title compound is a Schiff base synthesize as a part of our ongoing resaerch to study different biological activities of this medicinally important class of organic compounds.

The structure of title compound (Fig. 1) is similar to that of the previously published compound N'-(2-hydroxybenzylidene)-2-methoxybenzohydrazide monohydrate (Lu et al., 2008), with the difference that the 2-hydroxy benzene ring is replaced by a 2-hydroxy-5-methoxy phenyl ring (C1–C6). The phenyl rings (C1–C6 and C9–C14) form an angle of 18.88 (9)°. Bond lengths and angles are similar to those observed in structurally related benzohydrazide derivatives (Taha et al., 2012; Lu et al., 2008). The E configuration of the azomethine olefinic bond is stabilized by an intramolecular O1—H1A···N1 hydrogen bond (Table 1) forming a ring of S(6) graph set motif. The crystal structure is stabilized by an intermolecular N2—H2A···O3 interaction forming chains running parallel to the [001] direction (Fig. 2). The chains are further linked into a three-dimensional network by π···π stacking interactions with centroid–centroid distances of 3.6538 (10) and 3.8995 (11) Å.

Experimental

The title compound was synthesized by refluxing a mixture of 2-methoxybenzohydrazide (0.332 g, 2 mmol) and 2-hydroxy-5-methoxybenzaldehyde (0.304 g, 2 mmol) in methanol along with a catalytical amount of acetic acid for 3 hrs. The progress of reaction was monitored by TLC. After completion of reaction, the solvent was evaporated by vacuum to afford the crude product which was recrystallized by dissolving in methanol at room temperature to obtained needle-like crystals (0.504 g, 84% yield). All chemicals were purchased by Sigma Aldrich Germany.

Refinement

H atoms on methyl, phenyl and methine carbon atoms were positioned geometrically with C—H = 0.96 Å (CH3) and 0.93 Å (CH), and constrained to ride on their parent atoms with Uiso(H) = 1.5Ueq(CH3) or 1.2Ueq(CH). The H atoms on the nitrogen (N–H= 0.835 (17) Å) and oxygen (O–H= 0.84 (2) Å) atoms were located in a difference Fourier map and refined isotropically. A rotating group model was applied to the methyl groups.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with displacement ellipsoids drawn at the 30% probability level. The intramolecular hydrogen bond is shown as a dashed line.

Fig. 2.

Fig. 2.

The crystal packing of the title compound. Only hydrogen atoms involved in hydrogen bonding (dashed lines) are shown.

Crystal data

C16H16N2O4 F(000) = 632
Mr = 300.31 Dx = 1.307 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 3190 reflections
a = 14.5775 (13) Å θ = 2.3–25.0°
b = 11.0798 (11) Å µ = 0.10 mm1
c = 9.5893 (9) Å T = 273 K
β = 99.872 (2)° Block, colourless
V = 1525.9 (2) Å3 0.59 × 0.45 × 0.39 mm
Z = 4

Data collection

Bruker SMART APEX CCD area-detector diffractometer 2767 independent reflections
Radiation source: fine-focus sealed tube 2210 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.016
ω scan θmax = 25.5°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Bruker, 2000) h = −17→16
Tmin = 0.946, Tmax = 0.964 k = −13→13
8886 measured reflections l = −9→11

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124 H atoms treated by a mixture of independent and constrained refinement
S = 1.04 w = 1/[σ2(Fo2) + (0.0648P)2 + 0.1784P] where P = (Fo2 + 2Fc2)/3
2767 reflections (Δ/σ)max < 0.001
208 parameters Δρmax = 0.15 e Å3
0 restraints Δρmin = −0.15 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.41411 (11) 0.06306 (13) 0.11043 (13) 0.0918 (4)
O2 0.68838 (9) 0.10138 (14) 0.58074 (17) 0.1009 (4)
O3 0.17476 (9) 0.24072 (14) 0.01591 (12) 0.0957 (5)
O4 0.16599 (8) 0.47356 (10) 0.32496 (12) 0.0767 (3)
N1 0.31001 (9) 0.20202 (11) 0.23724 (13) 0.0618 (3)
N2 0.22889 (9) 0.26092 (12) 0.24670 (14) 0.0634 (4)
C1 0.47885 (12) 0.07530 (15) 0.22962 (18) 0.0714 (5)
C2 0.56411 (15) 0.01986 (17) 0.2354 (2) 0.0881 (6)
H2B 0.5758 −0.0250 0.1584 0.106*
C3 0.63154 (14) 0.03008 (17) 0.3527 (2) 0.0884 (6)
H3A 0.6885 −0.0083 0.3548 0.106*
C4 0.61614 (11) 0.09696 (16) 0.4685 (2) 0.0752 (5)
C5 0.53108 (11) 0.15170 (14) 0.46503 (19) 0.0692 (4)
H5A 0.5198 0.1959 0.5428 0.083*
C6 0.46152 (10) 0.14167 (13) 0.34613 (16) 0.0612 (4)
C7 0.37267 (11) 0.19998 (13) 0.34759 (17) 0.0629 (4)
H7A 0.3612 0.2364 0.4303 0.076*
C8 0.16545 (10) 0.28010 (13) 0.13077 (15) 0.0585 (4)
C9 0.08121 (10) 0.34987 (13) 0.15057 (14) 0.0578 (4)
C10 0.08163 (11) 0.44261 (14) 0.24890 (16) 0.0631 (4)
C11 −0.00098 (14) 0.50192 (17) 0.2600 (2) 0.0822 (5)
H11A −0.0012 0.5626 0.3270 0.099*
C12 −0.08169 (14) 0.47113 (19) 0.1728 (3) 0.0922 (6)
H12A −0.1367 0.5106 0.1818 0.111*
C13 −0.08304 (12) 0.3835 (2) 0.0728 (2) 0.0883 (6)
H13A −0.1383 0.3641 0.0131 0.106*
C14 −0.00128 (12) 0.32362 (16) 0.06098 (18) 0.0743 (5)
H14A −0.0019 0.2648 −0.0083 0.089*
C15 0.17013 (18) 0.5590 (2) 0.4353 (3) 0.1167 (8)
H15A 0.2339 0.5716 0.4783 0.175*
H15B 0.1357 0.5295 0.5050 0.175*
H15C 0.1437 0.6339 0.3974 0.175*
C16 0.67844 (15) 0.1759 (2) 0.6962 (3) 0.1081 (7)
H16A 0.7359 0.1775 0.7622 0.162*
H16B 0.6299 0.1448 0.7421 0.162*
H16C 0.6628 0.2563 0.6629 0.162*
H2A 0.2202 (11) 0.2826 (14) 0.3268 (18) 0.066 (5)*
H1A 0.3662 (16) 0.101 (2) 0.120 (2) 0.106 (7)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.1031 (10) 0.1066 (10) 0.0695 (8) 0.0320 (8) 0.0257 (7) −0.0085 (7)
O2 0.0627 (8) 0.1096 (10) 0.1274 (11) 0.0180 (7) 0.0077 (8) −0.0032 (9)
O3 0.1036 (10) 0.1328 (11) 0.0532 (7) 0.0220 (8) 0.0202 (6) −0.0145 (7)
O4 0.0744 (8) 0.0750 (7) 0.0801 (7) 0.0077 (6) 0.0118 (6) −0.0138 (6)
N1 0.0644 (8) 0.0624 (7) 0.0623 (8) 0.0105 (6) 0.0214 (7) 0.0013 (6)
N2 0.0642 (8) 0.0780 (8) 0.0509 (7) 0.0163 (6) 0.0180 (6) −0.0018 (6)
C1 0.0783 (11) 0.0701 (10) 0.0719 (10) 0.0150 (8) 0.0298 (9) 0.0068 (8)
C2 0.0933 (14) 0.0870 (12) 0.0924 (13) 0.0288 (11) 0.0400 (12) −0.0002 (10)
C3 0.0740 (12) 0.0836 (12) 0.1166 (16) 0.0274 (10) 0.0418 (12) 0.0122 (11)
C4 0.0571 (10) 0.0719 (10) 0.0989 (12) 0.0093 (8) 0.0204 (9) 0.0092 (9)
C5 0.0634 (10) 0.0658 (9) 0.0826 (11) 0.0059 (7) 0.0241 (9) −0.0007 (8)
C6 0.0608 (9) 0.0569 (8) 0.0708 (9) 0.0071 (7) 0.0247 (8) 0.0039 (7)
C7 0.0648 (10) 0.0622 (8) 0.0654 (9) 0.0073 (7) 0.0211 (8) −0.0030 (7)
C8 0.0666 (9) 0.0629 (8) 0.0488 (8) −0.0017 (7) 0.0180 (7) 0.0036 (6)
C9 0.0581 (9) 0.0632 (8) 0.0539 (8) 0.0000 (7) 0.0142 (7) 0.0152 (6)
C10 0.0643 (10) 0.0622 (8) 0.0654 (9) 0.0052 (7) 0.0183 (8) 0.0104 (7)
C11 0.0774 (12) 0.0749 (11) 0.0991 (13) 0.0142 (9) 0.0293 (10) 0.0068 (9)
C12 0.0663 (12) 0.0863 (13) 0.1271 (17) 0.0149 (10) 0.0258 (12) 0.0237 (12)
C13 0.0587 (11) 0.0930 (13) 0.1090 (15) −0.0021 (9) 0.0026 (10) 0.0306 (12)
C14 0.0737 (11) 0.0744 (10) 0.0733 (10) −0.0056 (8) 0.0082 (9) 0.0145 (8)
C15 0.1156 (18) 0.1105 (17) 0.1212 (18) 0.0065 (13) 0.0127 (14) −0.0508 (14)
C16 0.0801 (14) 0.1211 (18) 0.1162 (17) 0.0058 (12) −0.0030 (12) −0.0012 (15)

Geometric parameters (Å, º)

O1—C1 1.359 (2) C6—C7 1.450 (2)
O1—H1A 0.84 (2) C7—H7A 0.9300
O2—C4 1.372 (2) C8—C9 1.491 (2)
O2—C16 1.408 (3) C9—C14 1.384 (2)
O3—C8 1.2138 (17) C9—C10 1.394 (2)
O4—C10 1.362 (2) C10—C11 1.392 (2)
O4—C15 1.413 (2) C11—C12 1.365 (3)
N1—C7 1.2740 (18) C11—H11A 0.9300
N1—N2 1.3671 (17) C12—C13 1.362 (3)
N2—C8 1.3356 (19) C12—H12A 0.9300
N2—H2A 0.835 (17) C13—C14 1.386 (3)
C1—C2 1.379 (2) C13—H13A 0.9300
C1—C6 1.396 (2) C14—H14A 0.9300
C2—C3 1.366 (3) C15—H15A 0.9600
C2—H2B 0.9300 C15—H15B 0.9600
C3—C4 1.385 (3) C15—H15C 0.9600
C3—H3A 0.9300 C16—H16A 0.9600
C4—C5 1.376 (2) C16—H16B 0.9600
C5—C6 1.394 (2) C16—H16C 0.9600
C5—H5A 0.9300
C1—O1—H1A 109.1 (15) C14—C9—C10 118.52 (15)
C4—O2—C16 117.98 (14) C14—C9—C8 117.34 (14)
C10—O4—C15 119.23 (15) C10—C9—C8 124.08 (14)
C7—N1—N2 117.29 (12) O4—C10—C11 123.63 (16)
C8—N2—N1 120.27 (12) O4—C10—C9 116.54 (13)
C8—N2—H2A 121.8 (11) C11—C10—C9 119.75 (16)
N1—N2—H2A 117.9 (11) C12—C11—C10 120.09 (19)
O1—C1—C2 118.72 (16) C12—C11—H11A 120.0
O1—C1—C6 122.06 (14) C10—C11—H11A 120.0
C2—C1—C6 119.22 (17) C13—C12—C11 121.09 (18)
C3—C2—C1 120.82 (17) C13—C12—H12A 119.5
C3—C2—H2B 119.6 C11—C12—H12A 119.5
C1—C2—H2B 119.6 C12—C13—C14 119.35 (18)
C2—C3—C4 120.80 (16) C12—C13—H13A 120.3
C2—C3—H3A 119.6 C14—C13—H13A 120.3
C4—C3—H3A 119.6 C9—C14—C13 121.11 (18)
O2—C4—C5 124.81 (17) C9—C14—H14A 119.4
O2—C4—C3 116.11 (16) C13—C14—H14A 119.4
C5—C4—C3 119.07 (18) O4—C15—H15A 109.5
C4—C5—C6 120.71 (16) O4—C15—H15B 109.5
C4—C5—H5A 119.6 H15A—C15—H15B 109.5
C6—C5—H5A 119.6 O4—C15—H15C 109.5
C5—C6—C1 119.36 (14) H15A—C15—H15C 109.5
C5—C6—C7 118.83 (14) H15B—C15—H15C 109.5
C1—C6—C7 121.80 (15) O2—C16—H16A 109.5
N1—C7—C6 120.96 (14) O2—C16—H16B 109.5
N1—C7—H7A 119.5 H16A—C16—H16B 109.5
C6—C7—H7A 119.5 O2—C16—H16C 109.5
O3—C8—N2 121.93 (14) H16A—C16—H16C 109.5
O3—C8—C9 121.66 (14) H16B—C16—H16C 109.5
N2—C8—C9 116.39 (12)
C7—N1—N2—C8 171.24 (14) N1—N2—C8—O3 4.2 (2)
O1—C1—C2—C3 179.69 (17) N1—N2—C8—C9 −177.33 (12)
C6—C1—C2—C3 −0.6 (3) O3—C8—C9—C14 29.3 (2)
C1—C2—C3—C4 −0.4 (3) N2—C8—C9—C14 −149.17 (14)
C16—O2—C4—C5 −6.0 (3) O3—C8—C9—C10 −147.80 (16)
C16—O2—C4—C3 175.16 (18) N2—C8—C9—C10 33.75 (19)
C2—C3—C4—O2 180.00 (17) C15—O4—C10—C11 9.0 (2)
C2—C3—C4—C5 1.1 (3) C15—O4—C10—C9 −174.19 (17)
O2—C4—C5—C6 −179.68 (15) C14—C9—C10—O4 −173.55 (13)
C3—C4—C5—C6 −0.9 (3) C8—C9—C10—O4 3.5 (2)
C4—C5—C6—C1 0.0 (2) C14—C9—C10—C11 3.4 (2)
C4—C5—C6—C7 179.48 (14) C8—C9—C10—C11 −179.56 (14)
O1—C1—C6—C5 −179.50 (15) O4—C10—C11—C12 175.27 (16)
C2—C1—C6—C5 0.8 (2) C9—C10—C11—C12 −1.4 (3)
O1—C1—C6—C7 1.0 (2) C10—C11—C12—C13 −0.8 (3)
C2—C1—C6—C7 −178.75 (15) C11—C12—C13—C14 0.9 (3)
N2—N1—C7—C6 −178.73 (13) C10—C9—C14—C13 −3.3 (2)
C5—C6—C7—N1 173.93 (14) C8—C9—C14—C13 179.48 (14)
C1—C6—C7—N1 −6.6 (2) C12—C13—C14—C9 1.1 (3)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O1—H1A···N1 0.83 (2) 1.87 (2) 2.605 (2) 146.0 (19)
N2—H2A···O3i 0.835 (17) 2.051 (17) 2.8258 (17) 154.2 (15)

Symmetry code: (i) x, −y+1/2, z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: RZ5014).

References

  1. Bruker (2000). SADABS, SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812042389/rz5014sup1.cif

e-68-o3255-sup1.cif (19.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812042389/rz5014Isup2.hkl

e-68-o3255-Isup2.hkl (135.9KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812042389/rz5014Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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