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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Nov 7;68(Pt 12):o3296. doi: 10.1107/S1600536812045175

2-[(Adamantan-1-yl)amino­meth­yl]-4-chloro­phenol hemihydrate

Xu-Dong Jin a,*, Xue-Yue Yin a, Lu-Sha Xu a, Chun-Hua Ge a, Xiao-Hong Chang a
PMCID: PMC3588840  PMID: 23468805

Abstract

In the title compound, C17H22ClNO·0.5H2O, the water mol­ecule O atom resides on a twofold rotation axis. In the organic mol­ecule, the phenol group forms an intra­molecular O—H⋯N hydrogen bond. In the crystal, pairs of organic mol­ecules are hydrogen bonded through bridging solvent water mol­ecules, forming chains along the b-axis direction.

Related literature  

For the synthesis and crystal structure of 2-[(adamantan-1-yl­amino)­meth­yl]phenol, see: Wang & Tao (2012). For the synthesis and applications of amantadine derivatives, see: Camps et al. (2008).graphic file with name e-68-o3296-scheme1.jpg

Experimental  

Crystal data  

  • C17H22ClNO·0.5H2O

  • M r = 300.82

  • Monoclinic, Inline graphic

  • a = 25.469 (16) Å

  • b = 6.365 (4) Å

  • c = 18.306 (11) Å

  • β = 91.815 (12)°

  • V = 2966 (3) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 0.26 mm−1

  • T = 296 K

  • 0.35 × 0.30 × 0.16 mm

Data collection  

  • Bruker APEXII CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.915, T max = 0.960

  • 6372 measured reflections

  • 2606 independent reflections

  • 1798 reflections with I > 2σ(I)

  • R int = 0.098

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.069

  • wR(F 2) = 0.216

  • S = 1.08

  • 2606 reflections

  • 198 parameters

  • 3 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.39 e Å−3

  • Δρmin = −0.40 e Å−3

Data collection: APEX2 (Bruker, 2004); cell refinement: SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812045175/ld2073sup1.cif

e-68-o3296-sup1.cif (19.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812045175/ld2073Isup2.hkl

e-68-o3296-Isup2.hkl (128.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812045175/ld2073Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1⋯N1 0.83 (6) 2.07 (9) 2.611 (5) 122 (7)
O1W—H1W⋯O1i 0.84 (4) 1.99 (4) 2.768 (5) 153 (5)
N1—H1A⋯O1W 0.90 (4) 2.20 (4) 3.012 (5) 150 (4)

Symmetry code: (i) Inline graphic.

Acknowledgments

This work was supported financially by the Foundation of Liaoning Educational Department (No. 2008T073&LT2012001), the Science and Technology Foundation of Liaoning Province (No. 20071027), the Liaoning University Foundation of 211 Project for Innovative Talents Training and the Technology Major Projects Research Foundation (No. 2011ZX09102–007–02), China.

supplementary crystallographic information

Comment

Amantadine and its derivatives attract interest because of their biological activity and many potential applications (Camps et al., 2008). As an extension of our previous work on the compounds containing an adamantane group, we synthesized the title compound by reduction of the corresponding Schiff base. It crystallizes with solvent water. Asymmetric unit contains one molecule of the title compound and one half of solvent water (Fig. 1). In the organic molecule, all bond lengths and angles are normal and comparable with another reported compound, N-(2-Hydroxybenzyl)adamantan-1-amine (Wang et al., 2012). The hydroxyl O atom is involved in hydrogen bond (Table 1) with amino N atom with the OH···N distance of 2.611 (5) Å. This intra-molecular hydrogen bond formally results in a chiral center at the nitrogen atom, but the centrosymmetric crystal represents a racemate. The intramolecular hydrogen bond forms a R21(6) ring which stabilizes the molecular conformation (Table 1). In the crystal, the couples of organic molecules are alternated with crystallization water molecules along b axis forming intermolecular O(W)—H···O and N—H···O(W) hydrogen bonds (Fig. 2).

Experimental

Amantadine hydrochloride (0.376 g, 2.0 mmol) and KOH (0.112 g, 2.0 mmol) were stirred in 10 ml of anhydrous alcohol for 2 h. The produced white precipitate was filtered out and the transparent filtrate was added dropwise to 5-chloro-2-hydroxybenzaldehyde (0.312 g, 2.0 mmol) in 10 ml of anhydrous alcohol under constant stirring. The resulting solution was refluxed for ca. 3 h, concentrated to about 5 ml through reduced pressure distillation and then left at room temperature. A yellow Schiff base precipitate was obtained after one week under slow solvent evaporation.

NaBH4 (0.303 g, 8 mmol) was added into solution of the Schiff base (0.580 g, 2 mmol) in anhydrous methanol (10 ml). After 1 h stirring, a light-yellow solid, 4-chloro-2-((adamantan-1-ylamino)methyl)phenol was filtered and dried. A crystal of the title compound suitable for X-ray analysis has developed from a solution in H2O/EtOH mixture (1:2 v/v) after 5 days of slow solvent evaporation.

Refinement

The C-bound H atoms were positioned geometrically with C—H = 0.93–0.98 Å, and treated as riding with Uiso(H) = 1.2 Ueq(C). H atoms bonded to N and O atoms were located in difference Fourier series and refined isotropically.

Figures

Fig. 1.

Fig. 1.

Molecular structure of the title compound with displacement ellipsoids drawn at 30% probability level.

Fig. 2.

Fig. 2.

Packing diagram showing the H-bonded chains parallel to b axis. H atoms are omitted for clarity.

Crystal data

C17H22ClNO·0.5H2O F(000) = 1288
Mr = 300.82 Dx = 1.347 Mg m3
Monoclinic, C2/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2yc Cell parameters from 941 reflections
a = 25.469 (16) Å θ = 3.3–22.6°
b = 6.365 (4) Å µ = 0.26 mm1
c = 18.306 (11) Å T = 296 K
β = 91.815 (12)° Block, yellow
V = 2966 (3) Å3 0.35 × 0.30 × 0.16 mm
Z = 8

Data collection

Bruker APEXII CCD area-detector diffractometer 2606 independent reflections
Radiation source: fine-focus sealed tube 1798 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.098
φ and ω scans θmax = 25.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −30→28
Tmin = 0.915, Tmax = 0.960 k = −7→7
6372 measured reflections l = −13→21

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.069 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.216 H atoms treated by a mixture of independent and constrained refinement
S = 1.08 w = 1/[σ2(Fo2) + (0.0716P)2 + 4.2412P] where P = (Fo2 + 2Fc2)/3
2606 reflections (Δ/σ)max = 0.001
198 parameters Δρmax = 0.39 e Å3
3 restraints Δρmin = −0.40 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.68802 (17) 0.9819 (7) 0.1855 (2) 0.0245 (10)
H1C 0.6718 1.0857 0.2164 0.029*
H1D 0.7254 1.0115 0.1847 0.029*
C2 0.67926 (18) 0.7615 (7) 0.2166 (2) 0.0276 (11)
H2 0.6948 0.7526 0.2662 0.033*
C3 0.61919 (16) 0.7207 (7) 0.2187 (2) 0.0225 (10)
H3A 0.6128 0.5828 0.2392 0.027*
H3B 0.6030 0.8246 0.2495 0.027*
C4 0.59505 (16) 0.7331 (6) 0.1410 (2) 0.0181 (9)
C5 0.60470 (15) 0.9535 (6) 0.1103 (2) 0.0194 (9)
H5A 0.5884 1.0577 0.1410 0.023*
H5B 0.5890 0.9646 0.0615 0.023*
C6 0.66397 (17) 0.9950 (7) 0.1079 (2) 0.0222 (10)
H6 0.6700 1.1354 0.0879 0.027*
C7 0.68971 (16) 0.8294 (6) 0.0594 (2) 0.0194 (9)
H7A 0.6748 0.8377 0.0101 0.023*
H7B 0.7271 0.8560 0.0575 0.023*
C8 0.70416 (16) 0.5981 (7) 0.1683 (3) 0.0256 (10)
H8A 0.6985 0.4590 0.1882 0.031*
H8B 0.7417 0.6221 0.1671 0.031*
C9 0.68029 (16) 0.6101 (6) 0.0909 (2) 0.0217 (10)
H9 0.6967 0.5042 0.0601 0.026*
C10 0.62049 (16) 0.5697 (7) 0.0927 (2) 0.0215 (10)
H10A 0.6052 0.5776 0.0435 0.026*
H10B 0.6140 0.4301 0.1117 0.026*
C11 0.50199 (15) 0.7241 (6) 0.0828 (2) 0.0195 (9)
H11A 0.4970 0.8739 0.0758 0.023*
H11B 0.5173 0.6669 0.0393 0.023*
C12 0.45058 (16) 0.6210 (6) 0.0955 (2) 0.0182 (9)
C13 0.44999 (15) 0.4119 (6) 0.1226 (2) 0.0190 (9)
C14 0.40219 (17) 0.3142 (7) 0.1333 (2) 0.0225 (10)
H14 0.4017 0.1768 0.1506 0.027*
C15 0.35494 (16) 0.4183 (7) 0.1187 (2) 0.0220 (9)
H15 0.3230 0.3522 0.1263 0.026*
C16 0.35647 (16) 0.6241 (7) 0.0923 (2) 0.0196 (9)
C17 0.40353 (16) 0.7250 (6) 0.0811 (2) 0.0184 (9)
H17 0.4037 0.8626 0.0640 0.022*
Cl1 0.29758 (4) 0.75941 (17) 0.07489 (6) 0.0262 (4)
H1 0.5251 (19) 0.367 (15) 0.133 (6) 0.16 (5)*
H1A 0.5178 (18) 0.748 (7) 0.181 (2) 0.045 (16)*
N1 0.53801 (14) 0.6858 (6) 0.14802 (19) 0.0207 (8)
O1 0.49570 (13) 0.3128 (5) 0.13804 (18) 0.0272 (8)
O1W 0.5000 1.0204 (8) 0.2500 0.0532 (17)
H1W 0.491 (2) 1.097 (7) 0.286 (2) 0.040 (16)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.025 (2) 0.030 (2) 0.019 (2) −0.0099 (19) 0.0030 (17) −0.0067 (19)
C2 0.027 (2) 0.038 (3) 0.017 (2) −0.005 (2) −0.0043 (18) 0.005 (2)
C3 0.021 (2) 0.028 (2) 0.019 (2) −0.0037 (18) 0.0025 (17) 0.0021 (18)
C4 0.017 (2) 0.015 (2) 0.022 (2) −0.0023 (16) 0.0028 (16) 0.0003 (17)
C5 0.019 (2) 0.020 (2) 0.020 (2) 0.0036 (17) 0.0064 (16) −0.0012 (17)
C6 0.029 (2) 0.016 (2) 0.022 (2) −0.0015 (18) 0.0032 (18) −0.0026 (18)
C7 0.019 (2) 0.020 (2) 0.020 (2) −0.0029 (17) 0.0056 (16) −0.0023 (17)
C8 0.015 (2) 0.025 (2) 0.036 (3) −0.0031 (18) 0.0000 (18) 0.006 (2)
C9 0.020 (2) 0.018 (2) 0.028 (3) 0.0019 (17) 0.0057 (17) −0.0041 (18)
C10 0.025 (2) 0.018 (2) 0.021 (2) −0.0047 (18) 0.0019 (17) −0.0019 (17)
C11 0.018 (2) 0.022 (2) 0.019 (2) 0.0006 (17) −0.0007 (16) 0.0023 (17)
C12 0.024 (2) 0.018 (2) 0.013 (2) 0.0003 (17) −0.0001 (16) −0.0017 (16)
C13 0.021 (2) 0.021 (2) 0.016 (2) 0.0025 (17) 0.0014 (16) −0.0028 (17)
C14 0.030 (2) 0.015 (2) 0.022 (2) −0.0027 (18) −0.0010 (18) 0.0008 (18)
C15 0.021 (2) 0.029 (2) 0.016 (2) −0.0024 (18) −0.0002 (16) −0.0037 (18)
C16 0.022 (2) 0.026 (2) 0.011 (2) 0.0057 (18) −0.0022 (16) −0.0013 (17)
C17 0.024 (2) 0.018 (2) 0.013 (2) 0.0010 (17) 0.0009 (16) 0.0015 (16)
Cl1 0.0204 (6) 0.0357 (7) 0.0225 (6) 0.0044 (5) 0.0000 (4) 0.0045 (5)
N1 0.0196 (18) 0.029 (2) 0.0139 (19) 0.0023 (16) −0.0018 (14) −0.0034 (15)
O1 0.0271 (18) 0.0216 (16) 0.0326 (19) 0.0043 (14) −0.0043 (14) 0.0000 (14)
O1W 0.037 (3) 0.017 (3) 0.106 (6) 0.000 0.012 (3) 0.000

Geometric parameters (Å, º)

C1—C6 1.531 (6) C8—H8B 0.9700
C1—C2 1.533 (6) C9—C10 1.546 (6)
C1—H1C 0.9700 C9—H9 0.9800
C1—H1D 0.9700 C10—H10A 0.9700
C2—C8 1.517 (6) C10—H10B 0.9700
C2—C3 1.553 (6) C11—C12 1.489 (6)
C2—H2 0.9800 C11—N1 1.502 (5)
C3—C4 1.534 (6) C11—H11A 0.9700
C3—H3A 0.9700 C11—H11B 0.9700
C3—H3B 0.9700 C12—C17 1.387 (6)
C4—N1 1.493 (5) C12—C13 1.421 (6)
C4—C10 1.523 (6) C13—O1 1.346 (5)
C4—C5 1.534 (5) C13—C14 1.387 (6)
C5—C6 1.534 (6) C14—C15 1.392 (6)
C5—H5A 0.9700 C14—H14 0.9300
C5—H5B 0.9700 C15—C16 1.397 (6)
C6—C7 1.539 (6) C15—H15 0.9300
C6—H6 0.9800 C16—C17 1.381 (6)
C7—C9 1.532 (6) C16—Cl1 1.750 (4)
C7—H7A 0.9700 C17—H17 0.9300
C7—H7B 0.9700 N1—H1A 0.90 (2)
C8—C9 1.524 (6) O1—H1 0.83 (2)
C8—H8A 0.9700 O1W—H1W 0.847 (19)
C6—C1—C2 109.6 (3) C9—C8—H8A 109.6
C6—C1—H1C 109.8 C2—C8—H8B 109.6
C2—C1—H1C 109.8 C9—C8—H8B 109.6
C6—C1—H1D 109.8 H8A—C8—H8B 108.1
C2—C1—H1D 109.8 C8—C9—C7 109.4 (3)
H1C—C1—H1D 108.2 C8—C9—C10 109.7 (3)
C8—C2—C1 110.0 (4) C7—C9—C10 109.0 (3)
C8—C2—C3 109.3 (4) C8—C9—H9 109.6
C1—C2—C3 108.5 (4) C7—C9—H9 109.6
C8—C2—H2 109.7 C10—C9—H9 109.6
C1—C2—H2 109.7 C4—C10—C9 109.6 (3)
C3—C2—H2 109.7 C4—C10—H10A 109.7
C4—C3—C2 109.5 (3) C9—C10—H10A 109.7
C4—C3—H3A 109.8 C4—C10—H10B 109.7
C2—C3—H3A 109.8 C9—C10—H10B 109.7
C4—C3—H3B 109.8 H10A—C10—H10B 108.2
C2—C3—H3B 109.8 C12—C11—N1 108.9 (3)
H3A—C3—H3B 108.2 C12—C11—H11A 109.9
N1—C4—C10 110.2 (3) N1—C11—H11A 109.9
N1—C4—C5 112.6 (3) C12—C11—H11B 109.9
C10—C4—C5 109.7 (3) N1—C11—H11B 109.9
N1—C4—C3 105.8 (3) H11A—C11—H11B 108.3
C10—C4—C3 109.7 (3) C17—C12—C13 119.7 (4)
C5—C4—C3 108.8 (3) C17—C12—C11 121.3 (4)
C4—C5—C6 109.7 (3) C13—C12—C11 119.1 (3)
C4—C5—H5A 109.7 O1—C13—C14 121.2 (4)
C6—C5—H5A 109.7 O1—C13—C12 119.6 (4)
C4—C5—H5B 109.7 C14—C13—C12 119.3 (4)
C6—C5—H5B 109.7 C13—C14—C15 121.1 (4)
H5A—C5—H5B 108.2 C13—C14—H14 119.4
C1—C6—C5 109.2 (3) C15—C14—H14 119.4
C1—C6—C7 109.5 (3) C14—C15—C16 118.6 (4)
C5—C6—C7 109.7 (3) C14—C15—H15 120.7
C1—C6—H6 109.5 C16—C15—H15 120.7
C5—C6—H6 109.5 C17—C16—C15 121.4 (4)
C7—C6—H6 109.5 C17—C16—Cl1 119.2 (3)
C9—C7—C6 109.4 (3) C15—C16—Cl1 119.4 (3)
C9—C7—H7A 109.8 C16—C17—C12 119.9 (4)
C6—C7—H7A 109.8 C16—C17—H17 120.0
C9—C7—H7B 109.8 C12—C17—H17 120.0
C6—C7—H7B 109.8 C4—N1—C11 118.0 (3)
H7A—C7—H7B 108.2 C4—N1—H1A 123 (4)
C2—C8—C9 110.2 (3) C11—N1—H1A 96 (4)
C2—C8—H8A 109.6 C13—O1—H1 124 (7)
C6—C1—C2—C8 59.0 (5) C5—C4—C10—C9 60.1 (4)
C6—C1—C2—C3 −60.5 (4) C3—C4—C10—C9 −59.4 (4)
C8—C2—C3—C4 −59.4 (4) C8—C9—C10—C4 59.3 (4)
C1—C2—C3—C4 60.6 (4) C7—C9—C10—C4 −60.5 (4)
C2—C3—C4—N1 178.3 (3) N1—C11—C12—C17 134.1 (4)
C2—C3—C4—C10 59.5 (4) N1—C11—C12—C13 −46.0 (5)
C2—C3—C4—C5 −60.5 (4) C17—C12—C13—O1 −178.6 (4)
N1—C4—C5—C6 177.4 (3) C11—C12—C13—O1 1.5 (6)
C10—C4—C5—C6 −59.5 (4) C17—C12—C13—C14 0.9 (6)
C3—C4—C5—C6 60.5 (4) C11—C12—C13—C14 −179.0 (4)
C2—C1—C6—C5 60.9 (4) O1—C13—C14—C15 178.8 (4)
C2—C1—C6—C7 −59.2 (4) C12—C13—C14—C15 −0.7 (6)
C4—C5—C6—C1 −60.7 (4) C13—C14—C15—C16 0.4 (6)
C4—C5—C6—C7 59.3 (4) C14—C15—C16—C17 −0.4 (6)
C1—C6—C7—C9 59.9 (4) C14—C15—C16—Cl1 −178.9 (3)
C5—C6—C7—C9 −59.9 (4) C15—C16—C17—C12 0.7 (6)
C1—C2—C8—C9 −59.3 (4) Cl1—C16—C17—C12 179.2 (3)
C3—C2—C8—C9 59.7 (4) C13—C12—C17—C16 −0.9 (6)
C2—C8—C9—C7 59.7 (4) C11—C12—C17—C16 179.0 (4)
C2—C8—C9—C10 −59.8 (4) C10—C4—N1—C11 −72.3 (4)
C6—C7—C9—C8 −59.8 (4) C5—C4—N1—C11 50.5 (5)
C6—C7—C9—C10 60.1 (4) C3—C4—N1—C11 169.2 (3)
N1—C4—C10—C9 −175.5 (3) C12—C11—N1—C4 166.7 (3)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O1—H1···N1 0.83 (6) 2.07 (9) 2.611 (5) 122 (7)
O1W—H1W···O1i 0.84 (4) 1.99 (4) 2.768 (5) 153 (5)
N1—H1A···O1W 0.90 (4) 2.20 (4) 3.012 (5) 150 (4)

Symmetry code: (i) −x+1, y+1, −z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LD2073).

References

  1. Bruker (2004). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Camps, P., Duque, M. D., Vazquez, S., Naesens, L., De-Clercq, E., Sureda, F. X., Lopez-Querol, M., Camins, A., Pallas, M., Prathalingam, S. R., Kelly, J. M., Romero, V., Ivorra, D. & Cortes, D. (2008). Bioorg. Med. Chem. 16, 9925–9936. [DOI] [PMC free article] [PubMed]
  3. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  4. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  5. Wang, Y.-C. & Tao, R. (2012). Acta Cryst. E68, o293. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812045175/ld2073sup1.cif

e-68-o3296-sup1.cif (19.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812045175/ld2073Isup2.hkl

e-68-o3296-Isup2.hkl (128.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812045175/ld2073Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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