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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Nov 7;68(Pt 12):o3297. doi: 10.1107/S1600536812044868

1-Benzyl-1H-benzotriazole 3-oxide monohydrate

P Selvarathy Grace a, Samuel Robinson Jebas b, B Ravindran Durai Nayagam a,*, Dieter Schollmeyer c
PMCID: PMC3588841  PMID: 23468806

Abstract

In the title hydrate, C13H11N3O·H2O, the benzotriazole ring system is planar (r.m.s. deviation = 0.007 Å) and is almost orthogonal to the phenyl ring to which it is linked by a methyl­ene group, forming a dihedral angle of 81.87 (15)°. In the crystal, mol­ecules are linked into chains along [001] by O—H⋯O hydrogen bonds. The chains are consolidated into a three-dimensional architecture by C—H⋯O, C—H⋯π and π–π [centroid–centroid distance between the five- and six-membered rings of the benzotriazole ring system = 3.595 (3) Å] inter­actions.

Related literature  

For the biological activity of benzotriazole derivatives, see: Kopańska et al. (2005); Sarala et al. (2007). For their applications, see: Kopec et al. (2008); Krawczyk & Gdaniec (2005); Smith et al. (2001); Sha et al. (1996). For a related structure, see: Selvarathy Grace et al. (2012).graphic file with name e-68-o3297-scheme1.jpg

Experimental  

Crystal data  

  • C13H11N3O·H2O

  • M r = 243.26

  • Orthorhombic, Inline graphic

  • a = 12.556 (5) Å

  • b = 20.881 (8) Å

  • c = 4.6651 (18) Å

  • V = 1223.1 (8) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 173 K

  • 0.40 × 0.05 × 0.04 mm

Data collection  

  • Bruker SMART APEXII diffractometer

  • 15911 measured reflections

  • 1677 independent reflections

  • 1118 reflections with I > 2σ(I)

  • R int = 0.132

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.052

  • wR(F 2) = 0.140

  • S = 0.98

  • 1677 reflections

  • 164 parameters

  • 1 restraint

  • H-atom parameters constrained

  • Δρmax = 0.19 e Å−3

  • Δρmin = −0.24 e Å−3

Data collection: APEX2 (Bruker, 2008); cell refinement: SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812044868/tk5165sup1.cif

e-68-o3297-sup1.cif (21.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812044868/tk5165Isup2.hkl

e-68-o3297-Isup2.hkl (82.6KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812044868/tk5165Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg1 is the centroid of the C11–C16 phenyl ring.

D—H⋯A D—H H⋯A DA D—H⋯A
O1W—H1W⋯O1W i 0.82 1.93 2.744 (3) 169
O1W—H2W⋯O17 0.85 1.95 2.800 (3) 180
C10—H10A⋯O17ii 0.99 2.45 3.400 (5) 161
C10—H10BCg3iii 0.99 2.51 3.382 (4) 147

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

supplementary crystallographic information

Comment

Benzotriazole derivatives show biological activities such as anti-inflammatory, diuretic, anti-viral and anti-hypertensive (Kopańska et al., 2005; Sarala et al., 2007). They have been used as a corrosion inhibitor, anti-freeze agent, ultraviolet light stabilizer for plastics and as an anti-foggant in photography (Krawczyk & Gdaniec, 2005; Smith et al., 2001). N-aryloxy derivatives of benzotriazole have anti-mycobacterial activity (Kopec et al., 2008). Benzotriazole possessing three vicinal N atoms, is used as an anti-fouling and anti-wear reagent (Sha et al., 1996). Due to the above mentioned applications of benzotriazole, we have systematically synthesised and investigated the structures of novel benzotriazole derivatives. We have already reported the crystal structure of 1-(benzyl)-1H-benzotriazole (Selvarathy Grace et al., 2012). Here, we report the crystal structure of the title compound (I).

The benzotriazole ring in (I), Fig 1, is essentially planar with the maximum deviation from planarity being 0.010 (3) Å for atom N3. The mean plane of the benzotriazole ring (N1–N3,C4–C9) forms a dihedral angle of 81.87 (15) Å with the mean plane of the phenyl ring (C11–C16).

The molecules are linked into a one dimensional chain along [001] by O—H···O hydrogen bonds, Table 1 and Fig. 2. The crystal packing is stabilized by π–π stacking interactions with the centroid-centroid distance of 3.595 (3) Å [symmetry code: x, y, -1+z], together with C—H···O and C—H···π interactions, Table 1.

Experimental

A mixture of sodium salt of 1-hydroxyl benzotriazole (0.157 g, 1 mmol) and benzyl chloride (0.126 g, 1 mmol) in a mixture comprising ethanol, water and sodium ethoxide (10 ml) were heated at 333 K with continuous stirring for 6 h. The mixture was kept aside for slow evaporation. After a week, crystals suitable for X-ray diffraction were obtained.

Refinement

H atoms were positioned geometrically [C—H = 0.95 (aromatic) or 0.99 Å (methylene); O—H= 0.82–0.85 Å] and refined using a riding model, with Uiso(H) = 1.2-1.5Ueq(C,O).

Figures

Fig. 1.

Fig. 1.

The asymmetric unit of the title compound, showing the atomic numbering scheme. Displacement ellipsoids are drawn at the 50% probability level.

Fig. 2.

Fig. 2.

The crystal packing of the title compound, highlighting the one-dimensional chains along [001]. Hydrogen bonds are shown as dashed lines.

Crystal data

C13H11N3O·H2O F(000) = 512
Mr = 243.26 Dx = 1.321 Mg m3
Orthorhombic, Pna21 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2n Cell parameters from 1403 reflections
a = 12.556 (5) Å θ = 2.5–20.2°
b = 20.881 (8) Å µ = 0.09 mm1
c = 4.6651 (18) Å T = 173 K
V = 1223.1 (8) Å3 Needle, colourless
Z = 4 0.40 × 0.05 × 0.04 mm

Data collection

Bruker SMART APEXII diffractometer 1118 reflections with I > 2σ(I)
Radiation source: sealed tube Rint = 0.132
Graphite monochromator θmax = 28.2°, θmin = 1.9°
CCD scan h = −16→16
15911 measured reflections k = −27→27
1677 independent reflections l = −6→6

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.052 H-atom parameters constrained
wR(F2) = 0.140 w = 1/[σ2(Fo2) + (0.0825P)2] where P = (Fo2 + 2Fc2)/3
S = 0.98 (Δ/σ)max < 0.001
1677 reflections Δρmax = 0.19 e Å3
164 parameters Δρmin = −0.24 e Å3
1 restraint Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.038 (6)

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
N1 0.3160 (2) 0.27237 (12) 0.6604 (7) 0.0335 (7)
N2 0.4106 (2) 0.25008 (13) 0.5616 (7) 0.0372 (7)
N3 0.4253 (2) 0.19473 (13) 0.6976 (8) 0.0389 (8)
C4 0.3429 (3) 0.18041 (15) 0.8807 (9) 0.0343 (8)
C5 0.3241 (3) 0.12821 (16) 1.0631 (10) 0.0455 (10)
H5 0.3720 0.0931 1.0769 0.055*
C6 0.2315 (3) 0.13125 (18) 1.2207 (10) 0.0524 (11)
H6 0.2153 0.0974 1.3495 0.063*
C7 0.1594 (3) 0.18339 (18) 1.1969 (10) 0.0464 (9)
H7 0.0962 0.1829 1.3089 0.056*
C8 0.1776 (3) 0.23429 (16) 1.0183 (8) 0.0380 (9)
H8 0.1293 0.2692 1.0038 0.046*
C9 0.2720 (3) 0.23174 (14) 0.8583 (8) 0.0301 (8)
C10 0.2800 (3) 0.33671 (14) 0.5809 (9) 0.0344 (8)
H10A 0.2019 0.3360 0.5514 0.041*
H10B 0.3137 0.3492 0.3974 0.041*
C11 0.3069 (3) 0.38601 (15) 0.8068 (8) 0.0310 (8)
C12 0.2259 (3) 0.42481 (15) 0.9188 (9) 0.0364 (8)
H12 0.1545 0.4193 0.8558 0.044*
C13 0.2499 (3) 0.47148 (15) 1.1226 (9) 0.0419 (9)
H13 0.1948 0.4979 1.1972 0.050*
C14 0.3532 (3) 0.47944 (16) 1.2161 (10) 0.0423 (9)
H14 0.3693 0.5115 1.3539 0.051*
C15 0.4335 (3) 0.44073 (16) 1.1095 (9) 0.0396 (9)
H15 0.5044 0.4458 1.1767 0.048*
C16 0.4107 (3) 0.39448 (16) 0.9047 (9) 0.0377 (8)
H16 0.4663 0.3684 0.8308 0.045*
O17 0.51045 (19) 0.16046 (12) 0.6496 (9) 0.0576 (10)
O1W 0.4934 (2) 0.03436 (11) 0.4506 (7) 0.0472 (7)
H1W 0.4943 0.0098 0.5883 0.071*
H2W 0.4986 0.0728 0.5103 0.071*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
N1 0.0399 (15) 0.0262 (13) 0.0344 (17) 0.0007 (12) −0.0016 (14) 0.0040 (13)
N2 0.0383 (15) 0.0306 (13) 0.0426 (18) 0.0002 (13) 0.0004 (15) −0.0061 (14)
N3 0.0389 (15) 0.0276 (13) 0.0503 (19) 0.0033 (12) −0.0076 (16) −0.0087 (15)
C4 0.0400 (18) 0.0240 (15) 0.039 (2) −0.0013 (14) −0.0091 (18) −0.0034 (16)
C5 0.063 (2) 0.0263 (16) 0.048 (2) −0.0027 (17) −0.021 (2) 0.0027 (18)
C6 0.080 (3) 0.034 (2) 0.043 (2) −0.017 (2) −0.018 (3) 0.0126 (19)
C7 0.056 (2) 0.043 (2) 0.039 (2) −0.0120 (17) −0.003 (2) 0.008 (2)
C8 0.044 (2) 0.0316 (18) 0.038 (2) −0.0022 (15) −0.0036 (18) 0.0001 (16)
C9 0.0396 (18) 0.0241 (14) 0.0268 (19) −0.0015 (13) −0.0043 (16) 0.0025 (14)
C10 0.045 (2) 0.0259 (15) 0.0321 (19) 0.0012 (14) −0.0032 (17) 0.0053 (15)
C11 0.0410 (18) 0.0214 (14) 0.0304 (18) −0.0046 (14) −0.0022 (16) 0.0067 (14)
C12 0.0353 (17) 0.0297 (15) 0.044 (2) 0.0020 (14) −0.0066 (18) 0.0010 (17)
C13 0.0461 (19) 0.0287 (16) 0.051 (3) 0.0061 (15) −0.005 (2) −0.0025 (18)
C14 0.056 (2) 0.0299 (16) 0.041 (2) −0.0108 (16) −0.001 (2) −0.0005 (18)
C15 0.0401 (19) 0.0376 (17) 0.041 (2) −0.0109 (16) −0.0017 (18) 0.0010 (17)
C16 0.0376 (18) 0.0372 (17) 0.038 (2) 0.0002 (15) 0.0028 (17) 0.0048 (17)
O17 0.0404 (14) 0.0367 (13) 0.096 (3) 0.0084 (11) −0.0063 (17) −0.0224 (18)
O1W 0.0745 (18) 0.0287 (12) 0.0382 (15) −0.0030 (12) −0.0035 (14) −0.0018 (12)

Geometric parameters (Å, º)

N1—N2 1.356 (4) C10—H10A 0.9900
N1—C9 1.370 (4) C10—H10B 0.9900
N1—C10 1.465 (4) C11—C16 1.393 (5)
N2—N3 1.331 (4) C11—C12 1.401 (5)
N3—O17 1.306 (4) C12—C13 1.394 (5)
N3—C4 1.374 (5) C12—H12 0.9500
C4—C9 1.398 (4) C13—C14 1.379 (5)
C4—C5 1.403 (5) C13—H13 0.9500
C5—C6 1.377 (6) C14—C15 1.385 (5)
C5—H5 0.9500 C14—H14 0.9500
C6—C7 1.421 (6) C15—C16 1.389 (5)
C6—H6 0.9500 C15—H15 0.9500
C7—C8 1.370 (5) C16—H16 0.9500
C7—H7 0.9500 O1W—H1W 0.8225
C8—C9 1.401 (5) O1W—H2W 0.8519
C8—H8 0.9500
N2—N1—C9 111.7 (3) N1—C10—C11 112.3 (3)
N2—N1—C10 119.9 (3) N1—C10—H10A 109.1
C9—N1—C10 127.8 (3) C11—C10—H10A 109.1
N3—N2—N1 104.9 (3) N1—C10—H10B 109.1
O17—N3—N2 120.5 (3) C11—C10—H10B 109.1
O17—N3—C4 127.1 (3) H10A—C10—H10B 107.9
N2—N3—C4 112.4 (3) C16—C11—C12 118.9 (3)
N3—C4—C9 105.4 (3) C16—C11—C10 121.6 (3)
N3—C4—C5 132.3 (3) C12—C11—C10 119.5 (3)
C9—C4—C5 122.3 (3) C13—C12—C11 120.1 (3)
C6—C5—C4 115.5 (3) C13—C12—H12 119.9
C6—C5—H5 122.3 C11—C12—H12 119.9
C4—C5—H5 122.3 C14—C13—C12 120.2 (3)
C5—C6—C7 122.1 (4) C14—C13—H13 119.9
C5—C6—H6 118.9 C12—C13—H13 119.9
C7—C6—H6 118.9 C13—C14—C15 120.1 (4)
C8—C7—C6 122.4 (4) C13—C14—H14 120.0
C8—C7—H7 118.8 C15—C14—H14 120.0
C6—C7—H7 118.8 C14—C15—C16 120.2 (3)
C7—C8—C9 115.9 (3) C14—C15—H15 119.9
C7—C8—H8 122.1 C16—C15—H15 119.9
C9—C8—H8 122.1 C15—C16—C11 120.5 (3)
N1—C9—C4 105.5 (3) C15—C16—H16 119.8
N1—C9—C8 132.6 (3) C11—C16—H16 119.8
C4—C9—C8 121.9 (3) H1W—O1W—H2W 109.4
C9—N1—N2—N3 0.5 (4) C5—C4—C9—N1 −179.4 (3)
C10—N1—N2—N3 172.9 (3) N3—C4—C9—C8 −179.3 (3)
N1—N2—N3—O17 179.9 (3) C5—C4—C9—C8 0.3 (5)
N1—N2—N3—C4 0.2 (4) C7—C8—C9—N1 179.4 (4)
O17—N3—C4—C9 179.6 (3) C7—C8—C9—C4 −0.1 (5)
N2—N3—C4—C9 −0.8 (4) N2—N1—C10—C11 −96.1 (4)
O17—N3—C4—C5 0.0 (7) C9—N1—C10—C11 74.9 (4)
N2—N3—C4—C5 179.6 (4) N1—C10—C11—C16 54.8 (4)
N3—C4—C5—C6 178.9 (4) N1—C10—C11—C12 −126.0 (3)
C9—C4—C5—C6 −0.6 (5) C16—C11—C12—C13 0.7 (5)
C4—C5—C6—C7 0.8 (6) C10—C11—C12—C13 −178.6 (3)
C5—C6—C7—C8 −0.7 (6) C11—C12—C13—C14 −0.4 (6)
C6—C7—C8—C9 0.3 (6) C12—C13—C14—C15 −0.5 (6)
N2—N1—C9—C4 −1.0 (4) C13—C14—C15—C16 1.0 (6)
C10—N1—C9—C4 −172.6 (3) C14—C15—C16—C11 −0.7 (6)
N2—N1—C9—C8 179.5 (4) C12—C11—C16—C15 −0.1 (5)
C10—N1—C9—C8 7.8 (6) C10—C11—C16—C15 179.1 (3)
N3—C4—C9—N1 1.0 (4)

Hydrogen-bond geometry (Å, º)

Cg1 is the centroid of the C11–C16 phenyl ring.

D—H···A D—H H···A D···A D—H···A
O1W—H1W···O1Wi 0.82 1.93 2.744 (3) 169
O1W—H2W···O17 0.85 1.95 2.800 (3) 180
C10—H10A···O17ii 0.99 2.45 3.400 (5) 161
C10—H10B···Cg3iii 0.99 2.51 3.382 (4) 147

Symmetry codes: (i) −x+1, −y, z+1/2; (ii) x−1/2, −y+1/2, z; (iii) x, y, z−1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: TK5165).

References

  1. Bruker (2008). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Kopańska, K., Najda, A., Żebrowska, J., Chomicz, L., Piekarczyk, J., Myjak, P. & Bretner, M. (2005). Bioorg. Med. Chem. 13, 3601–3616. [DOI] [PubMed]
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  5. Sarala, G., Swamy, S. N., Prabhuswamy, B., Andalwar, S. M., Prasad, J. S. & Rangappa, K. S. (2007). Anal. Sci. 23, 25–26.
  6. Selvarathy Grace, P., Jebas, S. R., Ravindran Durai Nayagam, B. & Schollmeyer, D. (2012). Acta Cryst. E68, o1132. [DOI] [PMC free article] [PubMed]
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812044868/tk5165sup1.cif

e-68-o3297-sup1.cif (21.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812044868/tk5165Isup2.hkl

e-68-o3297-Isup2.hkl (82.6KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812044868/tk5165Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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