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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Nov 14;68(Pt 12):o3338. doi: 10.1107/S1600536812044844

5-Fluoro-2-(4-methyl­phen­yl)-3-methyl­sulfinyl-1-benzofuran

Hong Dae Choi a, Pil Ja Seo a, Uk Lee b,*
PMCID: PMC3588940  PMID: 23476176

Abstract

In the title compound, C16H13FO2S, the 4-methyl­phenyl ring makes a dihedral angle of 29.53 (4)° with the mean plane of the benzofuran fragment [r.m.s. deviation = 0.004 (1) Å]. In the crystal, mol­ecules are linked by pairs of weak C—H⋯O hydrogen bonds, forming inversion dimers that stack along the a axis.

Related literature  

For background information and the crystal structures of related compounds, see: Choi et al. (2009a ,b ).graphic file with name e-68-o3338-scheme1.jpg

Experimental  

Crystal data  

  • C16H13FO2S

  • M r = 288.32

  • Triclinic, Inline graphic

  • a = 8.0407 (2) Å

  • b = 8.0838 (2) Å

  • c = 11.3517 (2) Å

  • α = 80.126 (1)°

  • β = 85.091 (1)°

  • γ = 66.773 (1)°

  • V = 667.88 (3) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.25 mm−1

  • T = 173 K

  • 0.53 × 0.40 × 0.24 mm

Data collection  

  • Bruker SMART APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009) T min = 0.701, T max = 0.746

  • 12234 measured reflections

  • 3307 independent reflections

  • 3095 reflections with I > 2σ(I)

  • R int = 0.020

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.034

  • wR(F 2) = 0.091

  • S = 1.09

  • 3307 reflections

  • 183 parameters

  • H-atom parameters constrained

  • Δρmax = 0.24 e Å−3

  • Δρmin = −0.38 e Å−3

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 1998); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812044844/su2522sup1.cif

e-68-o3338-sup1.cif (23.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812044844/su2522Isup2.hkl

e-68-o3338-Isup2.hkl (162.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812044844/su2522Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C14—H14⋯O2i 0.95 2.54 3.4138 (16) 154

Symmetry code: (i) Inline graphic.

Acknowledgments

This work was supported by the Blue-Bio Industry Regional Innovation Center (RIC08-06-07) at Dongeui University as an RIC program under the Ministry of Knowledge Economy and Busan City.

supplementary crystallographic information

Comment

As a part of our ongoing study of 5-fluoro-3-methylsulfinyl-1-benzofuran derivatives with various substituents in the 2-position, such as 4-bromophenyl (Choi et al., 2009a) or 4-iodophenyl (Choi et al., 2009b), we report herein on the crystal structure of the title compound.

In the title molecule (Fig. 1), the benzofuran unit is essentially planar, with a mean deviation of 0.004 (1) Å from the mean plane defined by the nine constituent atoms. The dihedral angle between the 4-methylphenyl ring and the mean plane of the benzofuran ring is 29.53 (4)°.

In the crystal, molecules are connected by a pair of weak C—H···O hydrogen bonds, forming inversion dimers that stack along the a axis (Table 1).

Experimental

3-Chloroperoxybenzoic acid (77%, 269 mg, 1.2 mmol) was added in small portions to a stirred solution of 5-fluoro-2-(4-methylphenyl)-3-methylsulfanyl-1-benzofuran (326 mg, 1.1 mmol) in dichloromethane (30 mL) at 273 K. After being stirred at room temperature for 4h, the mixture was washed with saturated sodium bicarbonate solution and the organic layer was separated, dried over magnesium sulfate, filtered and concentrated at reduced pressure. The residue was purified by column chromatography (hexane–ethyl acetate, 1:1 v/v) to afford the title compound as a colorless solid [yield 73%, m.p. 417–418 K; Rf = 0.45 (hexane–ethyl acetate, 1:1 v/v)]. Single crystals suitable for X-ray diffraction were prepared by slow evaporation of a solution of the title compound in acetone at room temperature.

Refinement

All H atoms were positioned geometrically and refined using a riding model, with C—H = 0.95 Å for aryl and 0.98 Å for methyl H atoms, respectively. Uiso(H) = 1.2Ueq(C) for aryl and = 1.5Ueq(C) for methyl H atoms. The positions of methyl hydrogens were optimized rotationally.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title molecule, with the atom numbering. Displacement ellipsoids are drawn at the 50% probability level.

Crystal data

C16H13FO2S Z = 2
Mr = 288.32 F(000) = 300
Triclinic, P1 Dx = 1.434 Mg m3
Hall symbol: -P 1 Melting point < 418 K
a = 8.0407 (2) Å Mo Kα radiation, λ = 0.71073 Å
b = 8.0838 (2) Å Cell parameters from 7852 reflections
c = 11.3517 (2) Å θ = 2.8–28.3°
α = 80.126 (1)° µ = 0.25 mm1
β = 85.091 (1)° T = 173 K
γ = 66.773 (1)° Block, colourless
V = 667.88 (3) Å3 0.53 × 0.40 × 0.24 mm

Data collection

Bruker SMART APEXII CCD diffractometer 3307 independent reflections
Radiation source: rotating anode 3095 reflections with I > 2σ(I)
Graphite multilayer monochromator Rint = 0.020
Detector resolution: 10.0 pixels mm-1 θmax = 28.3°, θmin = 1.8°
φ and ω scans h = −10→10
Absorption correction: multi-scan (SADABS; Bruker, 2009) k = −10→10
Tmin = 0.701, Tmax = 0.746 l = −15→15
12234 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034 Hydrogen site location: difference Fourier map
wR(F2) = 0.091 H-atom parameters constrained
S = 1.09 w = 1/[σ2(Fo2) + (0.0463P)2 + 0.2225P] where P = (Fo2 + 2Fc2)/3
3307 reflections (Δ/σ)max < 0.001
183 parameters Δρmax = 0.24 e Å3
0 restraints Δρmin = −0.38 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.33118 (4) 0.20343 (4) 0.41621 (3) 0.02410 (10)
O1 0.15249 (12) 0.70005 (11) 0.50374 (7) 0.02400 (18)
F1 −0.01539 (13) 0.79204 (12) 0.03932 (7) 0.0428 (2)
O2 0.21524 (13) 0.17958 (13) 0.33018 (10) 0.0378 (2)
C1 0.24601 (16) 0.43759 (15) 0.42709 (10) 0.0221 (2)
C9 0.30709 (16) 0.43979 (16) 0.64794 (10) 0.0223 (2)
C8 0.23981 (16) 0.51353 (15) 0.52688 (10) 0.0221 (2)
C7 0.10062 (16) 0.74208 (16) 0.38628 (10) 0.0226 (2)
C10 0.46136 (17) 0.28077 (17) 0.67089 (11) 0.0260 (2)
H10 0.5246 0.2185 0.6068 0.031*
C2 0.15628 (16) 0.58455 (15) 0.33364 (10) 0.0221 (2)
C14 0.21693 (17) 0.53140 (17) 0.74329 (11) 0.0260 (2)
H14 0.1117 0.6401 0.7292 0.031*
C3 0.11782 (17) 0.59876 (17) 0.21373 (11) 0.0267 (2)
H3 0.1527 0.4950 0.1745 0.032*
C12 0.43513 (19) 0.30326 (18) 0.88157 (11) 0.0294 (3)
C11 0.52340 (18) 0.21267 (18) 0.78664 (11) 0.0292 (3)
H11 0.6274 0.1029 0.8011 0.035*
C6 0.01006 (17) 0.91590 (17) 0.32716 (11) 0.0274 (3)
H6 −0.0244 1.0202 0.3658 0.033*
C13 0.28174 (19) 0.46301 (18) 0.85797 (11) 0.0299 (3)
H13 0.2203 0.5264 0.9221 0.036*
C5 −0.02757 (18) 0.92941 (18) 0.20837 (12) 0.0303 (3)
H5 −0.0899 1.0452 0.1629 0.036*
C16 0.53640 (17) 0.19025 (18) 0.33560 (12) 0.0293 (3)
H16A 0.5951 0.0708 0.3092 0.044*
H16B 0.6178 0.2069 0.3877 0.044*
H16C 0.5085 0.2859 0.2657 0.044*
C4 0.02649 (18) 0.77212 (19) 0.15608 (11) 0.0297 (3)
C15 0.5046 (2) 0.2319 (2) 1.00707 (13) 0.0438 (4)
H15A 0.6136 0.1200 1.0067 0.066*
H15B 0.4114 0.2057 1.0589 0.066*
H15C 0.5341 0.3235 1.0371 0.066*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.02488 (16) 0.01864 (15) 0.02810 (16) −0.00752 (11) 0.00168 (11) −0.00507 (11)
O1 0.0276 (4) 0.0198 (4) 0.0228 (4) −0.0066 (3) −0.0014 (3) −0.0045 (3)
F1 0.0568 (6) 0.0438 (5) 0.0221 (4) −0.0142 (4) −0.0091 (4) 0.0014 (3)
O2 0.0297 (5) 0.0315 (5) 0.0574 (6) −0.0110 (4) −0.0052 (4) −0.0204 (5)
C1 0.0231 (5) 0.0196 (5) 0.0228 (5) −0.0074 (4) 0.0002 (4) −0.0038 (4)
C9 0.0237 (5) 0.0230 (5) 0.0216 (5) −0.0105 (4) −0.0004 (4) −0.0035 (4)
C8 0.0218 (5) 0.0197 (5) 0.0238 (5) −0.0070 (4) 0.0009 (4) −0.0037 (4)
C7 0.0227 (5) 0.0229 (5) 0.0221 (5) −0.0087 (4) −0.0005 (4) −0.0037 (4)
C10 0.0249 (6) 0.0278 (6) 0.0240 (6) −0.0082 (5) 0.0001 (4) −0.0060 (4)
C2 0.0217 (5) 0.0209 (5) 0.0234 (5) −0.0081 (4) 0.0006 (4) −0.0031 (4)
C14 0.0275 (6) 0.0244 (6) 0.0260 (6) −0.0094 (5) 0.0015 (5) −0.0060 (4)
C3 0.0301 (6) 0.0275 (6) 0.0231 (5) −0.0115 (5) −0.0002 (5) −0.0047 (4)
C12 0.0354 (7) 0.0332 (6) 0.0232 (6) −0.0173 (5) −0.0050 (5) −0.0020 (5)
C11 0.0267 (6) 0.0289 (6) 0.0290 (6) −0.0077 (5) −0.0050 (5) −0.0017 (5)
C6 0.0271 (6) 0.0214 (5) 0.0310 (6) −0.0069 (5) −0.0005 (5) −0.0033 (5)
C13 0.0362 (7) 0.0327 (6) 0.0233 (6) −0.0150 (6) 0.0024 (5) −0.0083 (5)
C5 0.0295 (6) 0.0250 (6) 0.0308 (6) −0.0070 (5) −0.0031 (5) 0.0031 (5)
C16 0.0263 (6) 0.0314 (6) 0.0305 (6) −0.0105 (5) 0.0036 (5) −0.0091 (5)
C4 0.0324 (6) 0.0342 (7) 0.0210 (5) −0.0125 (5) −0.0030 (5) −0.0002 (5)
C15 0.0576 (10) 0.0467 (9) 0.0260 (7) −0.0186 (8) −0.0123 (6) −0.0012 (6)

Geometric parameters (Å, º)

S1—O2 1.4907 (10) C3—C4 1.3738 (18)
S1—C1 1.7637 (11) C3—H3 0.9500
S1—C16 1.7911 (13) C12—C11 1.3897 (18)
O1—C7 1.3767 (14) C12—C13 1.3937 (19)
O1—C8 1.3770 (14) C12—C15 1.5082 (17)
F1—C4 1.3625 (14) C11—H11 0.9500
C1—C8 1.3665 (16) C6—C5 1.3839 (18)
C1—C2 1.4422 (16) C6—H6 0.9500
C9—C10 1.3935 (17) C13—H13 0.9500
C9—C14 1.4009 (16) C5—C4 1.3917 (19)
C9—C8 1.4589 (16) C5—H5 0.9500
C7—C6 1.3814 (16) C16—H16A 0.9800
C7—C2 1.3945 (16) C16—H16B 0.9800
C10—C11 1.3878 (17) C16—H16C 0.9800
C10—H10 0.9500 C15—H15A 0.9800
C2—C3 1.3971 (16) C15—H15B 0.9800
C14—C13 1.3835 (17) C15—H15C 0.9800
C14—H14 0.9500
O2—S1—C1 106.91 (6) C11—C12—C15 120.89 (13)
O2—S1—C16 105.80 (6) C13—C12—C15 120.67 (12)
C1—S1—C16 97.50 (6) C10—C11—C12 120.76 (12)
C7—O1—C8 106.64 (9) C10—C11—H11 119.6
C8—C1—C2 107.14 (10) C12—C11—H11 119.6
C8—C1—S1 126.89 (9) C7—C6—C5 116.19 (11)
C2—C1—S1 125.80 (9) C7—C6—H6 121.9
C10—C9—C14 118.99 (11) C5—C6—H6 121.9
C10—C9—C8 121.35 (10) C14—C13—C12 121.48 (12)
C14—C9—C8 119.65 (11) C14—C13—H13 119.3
C1—C8—O1 110.59 (10) C12—C13—H13 119.3
C1—C8—C9 133.89 (11) C6—C5—C4 119.51 (12)
O1—C8—C9 115.52 (10) C6—C5—H5 120.2
O1—C7—C6 125.11 (11) C4—C5—H5 120.2
O1—C7—C2 110.54 (10) S1—C16—H16A 109.5
C6—C7—C2 124.33 (11) S1—C16—H16B 109.5
C11—C10—C9 120.55 (11) H16A—C16—H16B 109.5
C11—C10—H10 119.7 S1—C16—H16C 109.5
C9—C10—H10 119.7 H16A—C16—H16C 109.5
C7—C2—C3 119.30 (11) H16B—C16—H16C 109.5
C7—C2—C1 105.09 (10) F1—C4—C3 117.81 (12)
C3—C2—C1 135.61 (11) F1—C4—C5 117.39 (11)
C13—C14—C9 119.77 (12) C3—C4—C5 124.80 (12)
C13—C14—H14 120.1 C12—C15—H15A 109.5
C9—C14—H14 120.1 C12—C15—H15B 109.5
C4—C3—C2 115.87 (11) H15A—C15—H15B 109.5
C4—C3—H3 122.1 C12—C15—H15C 109.5
C2—C3—H3 122.1 H15A—C15—H15C 109.5
C11—C12—C13 118.44 (11) H15B—C15—H15C 109.5
O2—S1—C1—C8 144.62 (11) C8—C1—C2—C7 −0.31 (13)
C16—S1—C1—C8 −106.28 (12) S1—C1—C2—C7 175.22 (9)
O2—S1—C1—C2 −30.03 (12) C8—C1—C2—C3 179.87 (13)
C16—S1—C1—C2 79.07 (11) S1—C1—C2—C3 −4.6 (2)
C2—C1—C8—O1 −0.23 (13) C10—C9—C14—C13 −0.10 (18)
S1—C1—C8—O1 −175.69 (8) C8—C9—C14—C13 −179.19 (11)
C2—C1—C8—C9 −179.10 (12) C7—C2—C3—C4 0.33 (17)
S1—C1—C8—C9 5.4 (2) C1—C2—C3—C4 −179.86 (13)
C7—O1—C8—C1 0.68 (13) C9—C10—C11—C12 −1.2 (2)
C7—O1—C8—C9 179.78 (9) C13—C12—C11—C10 0.7 (2)
C10—C9—C8—C1 29.5 (2) C15—C12—C11—C10 −178.63 (13)
C14—C9—C8—C1 −151.45 (13) O1—C7—C6—C5 179.08 (11)
C10—C9—C8—O1 −149.35 (11) C2—C7—C6—C5 0.79 (19)
C14—C9—C8—O1 29.72 (15) C9—C14—C13—C12 −0.41 (19)
C8—O1—C7—C6 −179.38 (11) C11—C12—C13—C14 0.1 (2)
C8—O1—C7—C2 −0.89 (13) C15—C12—C13—C14 179.43 (13)
C14—C9—C10—C11 0.90 (18) C7—C6—C5—C4 −0.17 (19)
C8—C9—C10—C11 179.98 (11) C2—C3—C4—F1 −179.35 (11)
O1—C7—C2—C3 −179.40 (10) C2—C3—C4—C5 0.3 (2)
C6—C7—C2—C3 −0.90 (18) C6—C5—C4—F1 179.26 (12)
O1—C7—C2—C1 0.74 (13) C6—C5—C4—C3 −0.4 (2)
C6—C7—C2—C1 179.25 (11)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
C14—H14···O2i 0.95 2.54 3.4138 (16) 154

Symmetry code: (i) −x, −y+1, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SU2522).

References

  1. Brandenburg, K. (1998). DIAMOND Crystal Impact GbR, Bonn, Germany.
  2. Bruker (2009). APEX2, SADABS and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Choi, H. D., Seo, P. J., Son, B. W. & Lee, U. (2009a). Acta Cryst. E65, o2084. [DOI] [PMC free article] [PubMed]
  4. Choi, H. D., Seo, P. J., Son, B. W. & Lee, U. (2009b). Acta Cryst. E65, o2115. [DOI] [PMC free article] [PubMed]
  5. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812044844/su2522sup1.cif

e-68-o3338-sup1.cif (23.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812044844/su2522Isup2.hkl

e-68-o3338-Isup2.hkl (162.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812044844/su2522Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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