Abstract
In the title hydrated molecular salt, C5H7N2 +·C7H3ClNO4 −·H2O, the ions and water molecules assemble into ribbons of R 6 5(22) rings along the c axis via O(water)—H⋯O−, N+—H⋯O(water) and N—H⋯O− hydrogen bonds. N—H⋯O− hydrogen bonds connect adjacent ribbons along the c-axis direction via R 4 4(12) rings, forming hydrogen-bonded layers. The CO2 and NO2 groups make dihedral angles of 81.8 (2) and 1.4 (2)°, respectively, with the ring in the anion.
Related literature
For related structures, see: Lemmerer et al. (2010 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).
Experimental
Crystal data
C5H7N2 +·C7H3ClNO4 −·H2O
M r = 313.7
Monoclinic,
a = 14.4500 (5) Å
b = 14.3300 (5) Å
c = 6.9918 (2) Å
β = 97.804 (2)°
V = 1434.37 (8) Å3
Z = 4
Mo Kα radiation
μ = 0.29 mm−1
T = 173 K
0.78 × 0.31 × 0.09 mm
Data collection
Bruker APEXII CCD area-detector diffractometer
Absorption correction: integration (XPREP; Bruker, 2004 ▶) T min = 0.896, T max = 0.977
14928 measured reflections
3456 independent reflections
2685 reflections with I > 2σ(I)
R int = 0.061
Refinement
R[F 2 > 2σ(F 2)] = 0.043
wR(F 2) = 0.122
S = 1.04
3456 reflections
210 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.5 e Å−3
Δρmin = −0.36 e Å−3
Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus and XPREP (Bruker 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶).
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812046077/fy2073sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812046077/fy2073Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812046077/fy2073Isup3.mol
Supplementary material file. DOI: 10.1107/S1600536812046077/fy2073Isup4.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N2—H2⋯O1W i | 0.93 (3) | 1.72 (3) | 2.641 (2) | 170 (2) |
| N3—H3A⋯O1 | 0.94 (2) | 1.99 (2) | 2.926 (2) | 171.1 (19) |
| N3—H3B⋯O2ii | 0.84 (2) | 2.16 (3) | 2.982 (2) | 165 (2) |
| O1W—H1W⋯O1iii | 0.75 (3) | 1.96 (3) | 2.698 (2) | 166 (3) |
| O1W—H2W⋯O2 | 0.78 (4) | 1.99 (4) | 2.729 (2) | 158 (3) |
Symmetry codes: (i)
; (ii)
; (iii)
.
Acknowledgments
This work was supported by the University of the Witwatersrand and the Molecular Sciences Institute, which are thanked for providing the infrastructure required to do this work, and the Friedel Sellshop grant for financial support.
supplementary crystallographic information
Comment
The title molecular salt is part of a larger research project looking at the factors that determine if a salt or a co-crystal forms between a specific carboxylic acid and various pyridine ring systems (Lemmerer et al., 2010).
In molecular salt (I) (Fig. 1), formed by dissolving 4-aminopyridine and 2-chloro-4-nitrobenzoic acid in methanol, two kinds of hydrogen-bonded rings are formed. The ring R56(22) (Bernstein et al., 1995) uses O1W—H···O-, N+—H···O and N—H···O- hydrogen bonds to connect all three species together into a 1-D ribbon (Fig. 2) along the c-axis. In addition, a R44(12) ring is formed between two amine groups and two carboxylate groups to connect two ribbons together to form layers (Fig. 3).
Experimental
Crystals were grown by slow evaporation of a methanol solution of 2-chloro-4-nitrobenzoic acid (0.100 g; 0.496 mmol) and 4-aminopyridine (0.047 g; 0.50 mmol) in 8 ml of methanol, and afforded colourless plates after three days of slow evaporation at ambient conditions.
Refinement
The aromatic C-bound H atoms were geometrically placed with C—H bond lengths of 0.95 Å, and were refined as riding with Uiso(H) = 1.2Ueq(C). The O-bound H atoms of the water molecule and the N-bound H atoms were located in the difference map and their coordinates as well as isotropic displacement parameters were refined freely. The residual electron density around the O atom of the water molecule was found to not correspond to any H atoms by inspection of the hydrogen bonding geometry.
Figures
Fig. 1.
The asymmetric unit of (I) showing the atomic numbering scheme. Displacement ellipsoids are shown at the 50% probability level.
Fig. 2.
Hydrogen bonding diagram of (I) showing the R56(22) rings to form ribbons. Intermolecular hydrogen bonds are shown as dashed red lines forming dimers. Atoms with superscrips (i) and (ii) are at the symmetry positions (x, y, z - 1) and (x, -y + 1/2, z - 1/2) respectively.
Fig. 3.
The layers form by combining the one-dimensional ribbons using R44(12) rings.
Crystal data
| C5H7N2+·C7H3ClNO4−·H2O | F(000) = 648 |
| Mr = 313.7 | Dx = 1.453 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ybc | Cell parameters from 4262 reflections |
| a = 14.4500 (5) Å | θ = 2.8–27.8° |
| b = 14.3300 (5) Å | µ = 0.29 mm−1 |
| c = 6.9918 (2) Å | T = 173 K |
| β = 97.804 (2)° | Plate, colourless |
| V = 1434.37 (8) Å3 | 0.78 × 0.31 × 0.09 mm |
| Z = 4 |
Data collection
| Bruker APEXII CCD area-detector diffractometer | 2685 reflections with I > 2σ(I) |
| ω scans | Rint = 0.061 |
| Absorption correction: integration (XPREP; Bruker, 2004) | θmax = 28°, θmin = 1.4° |
| Tmin = 0.896, Tmax = 0.977 | h = −19→19 |
| 14928 measured reflections | k = −18→18 |
| 3456 independent reflections | l = −8→9 |
Refinement
| Refinement on F2 | 0 restraints |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| R[F2 > 2σ(F2)] = 0.043 | w = 1/[σ2(Fo2) + (0.0662P)2 + 0.1397P] where P = (Fo2 + 2Fc2)/3 |
| wR(F2) = 0.122 | (Δ/σ)max < 0.001 |
| S = 1.04 | Δρmax = 0.5 e Å−3 |
| 3456 reflections | Δρmin = −0.36 e Å−3 |
| 210 parameters |
Special details
| Experimental. Numerical integration absorption corrections based on indexed crystal faces were applied using the XPREP routine (Bruker, 2004) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| C1 | 0.69246 (11) | 0.61389 (11) | 0.2594 (2) | 0.0261 (3) | |
| C2 | 0.61757 (12) | 0.55610 (11) | 0.2858 (2) | 0.0271 (3) | |
| C3 | 0.52758 (11) | 0.57500 (11) | 0.2008 (2) | 0.0284 (3) | |
| H3 | 0.4772 | 0.5348 | 0.2188 | 0.034* | |
| C4 | 0.51347 (11) | 0.65438 (12) | 0.0887 (2) | 0.0290 (4) | |
| C5 | 0.58469 (12) | 0.71419 (12) | 0.0592 (2) | 0.0325 (4) | |
| H5 | 0.5725 | 0.7687 | −0.0176 | 0.039* | |
| C6 | 0.67437 (12) | 0.69317 (12) | 0.1438 (2) | 0.0311 (4) | |
| H6 | 0.7245 | 0.7332 | 0.1232 | 0.037* | |
| C7 | 0.79130 (11) | 0.59307 (11) | 0.3515 (2) | 0.0291 (3) | |
| N1 | 0.41775 (10) | 0.67644 (11) | 0.0004 (2) | 0.0349 (3) | |
| O1 | 0.84325 (9) | 0.55490 (9) | 0.24589 (19) | 0.0412 (3) | |
| O2 | 0.81313 (9) | 0.61801 (10) | 0.52270 (17) | 0.0424 (3) | |
| O3 | 0.35519 (9) | 0.62315 (10) | 0.0282 (2) | 0.0462 (3) | |
| O4 | 0.40575 (10) | 0.74821 (11) | −0.0962 (2) | 0.0513 (4) | |
| Cl1 | 0.63660 (3) | 0.45679 (3) | 0.42817 (7) | 0.04119 (15) | |
| C8 | 0.96351 (14) | 0.15836 (13) | 0.3659 (2) | 0.0361 (4) | |
| H8 | 1.0019 | 0.1049 | 0.3936 | 0.043* | |
| C9 | 1.00312 (12) | 0.24412 (13) | 0.3780 (2) | 0.0341 (4) | |
| H9 | 1.0687 | 0.2506 | 0.4123 | 0.041* | |
| C10 | 0.94613 (12) | 0.32426 (12) | 0.3393 (2) | 0.0293 (4) | |
| C11 | 0.84995 (12) | 0.30971 (12) | 0.2835 (2) | 0.0309 (4) | |
| H11 | 0.8095 | 0.3614 | 0.2527 | 0.037* | |
| C12 | 0.81509 (13) | 0.22161 (13) | 0.2739 (2) | 0.0352 (4) | |
| H12 | 0.75 | 0.2124 | 0.237 | 0.042* | |
| N2 | 0.87086 (12) | 0.14714 (11) | 0.3155 (2) | 0.0357 (3) | |
| N3 | 0.98294 (12) | 0.40973 (11) | 0.3540 (2) | 0.0368 (4) | |
| H2 | 0.8439 (17) | 0.0887 (18) | 0.322 (3) | 0.061 (7)* | |
| H3A | 0.9432 (16) | 0.4610 (15) | 0.322 (3) | 0.045 (6)* | |
| H3B | 1.0408 (17) | 0.4127 (15) | 0.391 (3) | 0.048 (6)* | |
| O1W | 0.8108 (2) | 0.52435 (14) | 0.8618 (3) | 0.1094 (11) | |
| H1W | 0.817 (2) | 0.541 (2) | 0.965 (5) | 0.080 (10)* | |
| H2W | 0.806 (2) | 0.562 (2) | 0.781 (5) | 0.096 (11)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| C1 | 0.0257 (8) | 0.0296 (8) | 0.0228 (7) | 0.0026 (6) | 0.0032 (6) | −0.0001 (6) |
| C2 | 0.0310 (8) | 0.0261 (8) | 0.0245 (7) | 0.0017 (6) | 0.0048 (6) | 0.0017 (6) |
| C3 | 0.0268 (8) | 0.0306 (8) | 0.0281 (8) | −0.0034 (6) | 0.0046 (6) | −0.0036 (6) |
| C4 | 0.0241 (8) | 0.0377 (9) | 0.0244 (7) | 0.0046 (6) | 0.0007 (6) | −0.0018 (6) |
| C5 | 0.0319 (9) | 0.0339 (9) | 0.0312 (8) | 0.0036 (7) | 0.0030 (7) | 0.0082 (7) |
| C6 | 0.0265 (9) | 0.0340 (9) | 0.0325 (8) | −0.0007 (7) | 0.0033 (6) | 0.0062 (7) |
| C7 | 0.0260 (8) | 0.0281 (8) | 0.0319 (8) | 0.0004 (6) | −0.0007 (6) | 0.0059 (6) |
| N1 | 0.0256 (8) | 0.0466 (9) | 0.0316 (7) | 0.0043 (6) | −0.0001 (6) | −0.0049 (7) |
| O1 | 0.0307 (7) | 0.0477 (8) | 0.0437 (7) | 0.0115 (6) | −0.0002 (5) | −0.0040 (6) |
| O2 | 0.0367 (7) | 0.0580 (8) | 0.0302 (6) | −0.0009 (6) | −0.0039 (5) | −0.0001 (6) |
| O3 | 0.0254 (7) | 0.0589 (9) | 0.0530 (8) | −0.0023 (6) | 0.0004 (6) | −0.0042 (7) |
| O4 | 0.0382 (8) | 0.0584 (9) | 0.0541 (8) | 0.0136 (7) | −0.0054 (6) | 0.0154 (7) |
| Cl1 | 0.0433 (3) | 0.0341 (2) | 0.0463 (3) | 0.00160 (18) | 0.0065 (2) | 0.01473 (18) |
| C8 | 0.0429 (11) | 0.0369 (9) | 0.0287 (8) | 0.0107 (8) | 0.0059 (7) | 0.0010 (7) |
| C9 | 0.0295 (9) | 0.0400 (10) | 0.0323 (8) | 0.0069 (7) | 0.0027 (7) | 0.0002 (7) |
| C10 | 0.0306 (9) | 0.0360 (9) | 0.0214 (7) | 0.0035 (7) | 0.0037 (6) | −0.0002 (6) |
| C11 | 0.0282 (9) | 0.0381 (9) | 0.0262 (8) | 0.0056 (7) | 0.0033 (6) | 0.0018 (7) |
| C12 | 0.0316 (9) | 0.0472 (10) | 0.0266 (8) | −0.0011 (7) | 0.0030 (7) | 0.0004 (7) |
| N2 | 0.0440 (9) | 0.0359 (8) | 0.0275 (7) | −0.0008 (7) | 0.0060 (6) | 0.0002 (6) |
| N3 | 0.0289 (8) | 0.0361 (8) | 0.0435 (9) | 0.0021 (7) | −0.0018 (7) | −0.0013 (7) |
| O1W | 0.249 (4) | 0.0447 (10) | 0.0407 (10) | 0.0464 (14) | 0.0425 (14) | 0.0092 (9) |
Geometric parameters (Å, º)
| C1—C2 | 1.395 (2) | C8—N2 | 1.347 (2) |
| C1—C6 | 1.398 (2) | C8—C9 | 1.353 (3) |
| C1—C7 | 1.515 (2) | C8—H8 | 0.95 |
| C2—C3 | 1.381 (2) | C9—C10 | 1.418 (2) |
| C2—Cl1 | 1.7369 (16) | C9—H9 | 0.95 |
| C3—C4 | 1.381 (2) | C10—N3 | 1.334 (2) |
| C3—H3 | 0.95 | C10—C11 | 1.407 (2) |
| C4—C5 | 1.376 (2) | C11—C12 | 1.358 (2) |
| C4—N1 | 1.471 (2) | C11—H11 | 0.95 |
| C5—C6 | 1.383 (2) | C12—N2 | 1.345 (2) |
| C5—H5 | 0.95 | C12—H12 | 0.95 |
| C6—H6 | 0.95 | N2—H2 | 0.93 (3) |
| C7—O2 | 1.248 (2) | N3—H3A | 0.94 (2) |
| C7—O1 | 1.248 (2) | N3—H3B | 0.84 (2) |
| N1—O3 | 1.219 (2) | O1W—H1W | 0.75 (3) |
| N1—O4 | 1.230 (2) | O1W—H2W | 0.78 (4) |
| C2—C1—C6 | 118.13 (15) | O4—N1—C4 | 117.71 (15) |
| C2—C1—C7 | 122.05 (14) | N2—C8—C9 | 121.43 (16) |
| C6—C1—C7 | 119.83 (14) | N2—C8—H8 | 119.3 |
| C3—C2—C1 | 121.91 (15) | C9—C8—H8 | 119.3 |
| C3—C2—Cl1 | 118.28 (12) | C8—C9—C10 | 119.60 (17) |
| C1—C2—Cl1 | 119.80 (12) | C8—C9—H9 | 120.2 |
| C4—C3—C2 | 117.63 (15) | C10—C9—H9 | 120.2 |
| C4—C3—H3 | 121.2 | N3—C10—C11 | 121.74 (16) |
| C2—C3—H3 | 121.2 | N3—C10—C9 | 120.92 (16) |
| C5—C4—C3 | 122.84 (15) | C11—C10—C9 | 117.33 (16) |
| C5—C4—N1 | 118.88 (15) | C12—C11—C10 | 119.83 (16) |
| C3—C4—N1 | 118.27 (15) | C12—C11—H11 | 120.1 |
| C4—C5—C6 | 118.46 (15) | C10—C11—H11 | 120.1 |
| C4—C5—H5 | 120.8 | N2—C12—C11 | 121.31 (17) |
| C6—C5—H5 | 120.8 | N2—C12—H12 | 119.3 |
| C5—C6—C1 | 121.02 (16) | C11—C12—H12 | 119.3 |
| C5—C6—H6 | 119.5 | C12—N2—C8 | 120.46 (16) |
| C1—C6—H6 | 119.5 | C12—N2—H2 | 118.9 (15) |
| O2—C7—O1 | 126.79 (16) | C8—N2—H2 | 120.3 (15) |
| O2—C7—C1 | 116.89 (15) | C10—N3—H3A | 118.3 (13) |
| O1—C7—C1 | 116.28 (14) | C10—N3—H3B | 116.1 (15) |
| O3—N1—O4 | 124.01 (15) | H3A—N3—H3B | 126 (2) |
| O3—N1—C4 | 118.28 (15) | H1W—O1W—H2W | 117 (3) |
| C6—C1—C2—C3 | 0.4 (2) | C2—C1—C7—O1 | 99.31 (18) |
| C7—C1—C2—C3 | −179.64 (14) | C6—C1—C7—O1 | −80.7 (2) |
| C6—C1—C2—Cl1 | 179.99 (12) | C5—C4—N1—O3 | −179.69 (15) |
| C7—C1—C2—Cl1 | 0.0 (2) | C3—C4—N1—O3 | −0.8 (2) |
| C1—C2—C3—C4 | −0.6 (2) | C5—C4—N1—O4 | −0.2 (2) |
| Cl1—C2—C3—C4 | 179.75 (12) | C3—C4—N1—O4 | 178.68 (15) |
| C2—C3—C4—C5 | 0.1 (2) | N2—C8—C9—C10 | 0.8 (3) |
| C2—C3—C4—N1 | −178.79 (14) | C8—C9—C10—N3 | 178.61 (16) |
| C3—C4—C5—C6 | 0.8 (3) | C8—C9—C10—C11 | −1.9 (2) |
| N1—C4—C5—C6 | 179.59 (14) | N3—C10—C11—C12 | −178.78 (16) |
| C4—C5—C6—C1 | −1.0 (3) | C9—C10—C11—C12 | 1.8 (2) |
| C2—C1—C6—C5 | 0.5 (2) | C10—C11—C12—N2 | −0.5 (2) |
| C7—C1—C6—C5 | −179.52 (15) | C11—C12—N2—C8 | −0.8 (2) |
| C2—C1—C7—O2 | −82.6 (2) | C9—C8—N2—C12 | 0.6 (2) |
| C6—C1—C7—O2 | 97.40 (18) |
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H2···O1Wi | 0.93 (3) | 1.72 (3) | 2.641 (2) | 170 (2) |
| N3—H3A···O1 | 0.94 (2) | 1.99 (2) | 2.926 (2) | 171.1 (19) |
| N3—H3B···O2ii | 0.84 (2) | 2.16 (3) | 2.982 (2) | 165 (2) |
| O1W—H1W···O1iii | 0.75 (3) | 1.96 (3) | 2.698 (2) | 166 (3) |
| O1W—H2W···O2 | 0.78 (4) | 1.99 (4) | 2.729 (2) | 158 (3) |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) −x+2, −y+1, −z+1; (iii) x, y, z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: FY2073).
References
- Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 35, 1555–1573.
- Brandenburg, K. (1999). DIAMOND Crystal Impact GbR, Bonn, Germany.
- Bruker (2004). SAINT-Plus and XPREP Bruker AXS Inc., Madison, Wisconsin, USA.
- Bruker (2005). APEX2 Bruker AXS Inc., Madison, Wisconsin, USA.
- Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854.
- Lemmerer, A., Esterhuysen, C. & Bernstein, J. (2010). J. Pharm. Sci. 99, 4054–4071. [DOI] [PubMed]
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812046077/fy2073sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812046077/fy2073Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812046077/fy2073Isup3.mol
Supplementary material file. DOI: 10.1107/S1600536812046077/fy2073Isup4.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report



