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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Nov 17;68(Pt 12):o3379. doi: 10.1107/S1600536812045606

2-(2-Hy­droxy­propan-2-yl)-6-(prop-2-yn­yloxy)-1-benzofuran-3(2H)-one

Henok H Kinfe a, Yonas H Belay a, Zanele H Phasha a,*
PMCID: PMC3588975  PMID: 23476211

Abstract

In the title compound, C14H14O4, the prop-2-yn­yloxy O—C—C C plane [maximum deviation = 0.0116 (12) Å] forms a dihedral angle of 78.44 (9)° with the benzofuran-3(2H)-one ring system. In the crystal, mol­ecules are linked by O—H⋯O hydrogen bonds, forming a tape along the a-axis direction. C—H⋯O inter­actions are observed between the tapes.

Related literature  

For background to the development of hybrid drug candidates against tuberculosis, malaria and cancer, see: Morphy et al. (2004). For details of the synthesis of the title compound, see: Hoogendoorn et al. (2011).graphic file with name e-68-o3379-scheme1.jpg

Experimental  

Crystal data  

  • C14H14O4

  • M r = 246.25

  • Triclinic, Inline graphic

  • a = 5.4199 (2) Å

  • b = 9.0785 (3) Å

  • c = 12.3555 (4) Å

  • α = 85.758 (2)°

  • β = 80.455 (2)°

  • γ = 81.829 (2)°

  • V = 592.65 (4) Å3

  • Z = 2

  • Cu Kα radiation

  • μ = 0.84 mm−1

  • T = 100 K

  • 0.39 × 0.11 × 0.11 mm

Data collection  

  • Bruker APEX DUO 4K CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2008) T min = 0.736, T max = 0.913

  • 10266 measured reflections

  • 1983 independent reflections

  • 1888 reflections with I > 2σ(I)

  • R int = 0.025

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.032

  • wR(F 2) = 0.082

  • S = 1.03

  • 1983 reflections

  • 166 parameters

  • H-atom parameters constrained

  • Δρmax = 0.21 e Å−3

  • Δρmin = −0.17 e Å−3

Data collection: APEX2 (Bruker, 2011); cell refinement: SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812045606/is5212sup1.cif

e-68-o3379-sup1.cif (22.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812045606/is5212Isup2.hkl

e-68-o3379-Isup2.hkl (95.5KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812045606/is5212Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H⋯O4i 0.84 2.01 2.8328 (12) 167
C1—H1⋯O1ii 0.95 2.45 3.3283 (16) 154
C5—H5⋯O1iii 0.95 2.52 3.3809 (15) 152

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

Research funds of the University of Johannesburg is gratefully acknowledged.

supplementary crystallographic information

Comment

In our research in the development of hybrid drug candidates against tuberculosis, malaria and cancer (Morphy et al., 2004), the title compound was synthesized as a building starting material. The title compound was synthesized by the reaction of 6-hydroxy-benzofuran-3-one with propargyl bromide in the presence of potassium carbonate at relatively high temperature (Hoogendoorn et al., 2011). Herein we report the crystal structure of the title compound.

In the crystal structure of the title compound, the propyn-1-yloxy group (C1–C3/O3) forms a dihedral angle of 78.44 (9)° with the fused benzofuran-3-one ring system (Fig. 1). The crystal packing is stabilized by O—H···O interactions (Table 1 and Fig. 2). The C—H···O interactions are also observed (Table 1).

Experimental

A solution of 6-hydroxy-benzofuran-3-one (1 g, 6.66 mmol) in dry acetone was treated with potassium carbonate (1.3 g, 9.32 mmol). The reaction mixture was heated at a temperature of 70–80 °C for about 30 minutes and then propargyl bromide (1.6 ml, 14.65 mmol) was added to it. The combined solution was stirred for about 2.5 h and concentrated under vacuum. The residue was diluted with water and extracted three times with ethyl acetate. The combined organic layer was washed with brine and water and dried over anhydrous magnesium sulfate. After that filtered and the filtrate solid product was recrystalized from ethyl acetate and hexane to afford 70% of the target compound as yellow crystal (m.p. 118–120 °C).

Refinement

All hydrogen atoms were positioned in geometrically idealized positions with C—H = 1.00 Å (methine), 0.99 Å (methylene), 0.98 Å (methyl), 0.95 Å (aromatic), and 0.84 Å (hydroxyl). All hydrogen atoms were allowed to ride on their parent atoms with Uiso(H) = 1.2Ueq, except for the methyl and hydroxyl hydrogen atoms where Uiso(H) = 1.5Ueq was utilized. The initial positions of methyl hydrogen atoms were located in a difference Fourier map and refined as a fixed rotor.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with labeling and displacement ellipsoids drawn at the 50% probability level.

Fig. 2.

Fig. 2.

A portion of the crystal packing viewed approximately down the b axis. Dotted lines denote intermolecular O—H···O interactions.

Crystal data

C14H14O4 Z = 2
Mr = 246.25 F(000) = 260
Triclinic, P1 Dx = 1.38 Mg m3
Hall symbol: -P 1 Cu Kα radiation, λ = 1.54178 Å
a = 5.4199 (2) Å Cell parameters from 4605 reflections
b = 9.0785 (3) Å θ = 4.9–66.1°
c = 12.3555 (4) Å µ = 0.84 mm1
α = 85.758 (2)° T = 100 K
β = 80.455 (2)° Needle, colourless
γ = 81.829 (2)° 0.39 × 0.11 × 0.11 mm
V = 592.65 (4) Å3

Data collection

Bruker APEX DUO 4K CCD diffractometer 1983 independent reflections
Incoatec Quazar Multilayer Mirror monochromator 1888 reflections with I > 2σ(I)
Detector resolution: 8.4 pixels mm-1 Rint = 0.025
φ and ω scans θmax = 66.3°, θmin = 4.9°
Absorption correction: multi-scan (SADABS; Bruker, 2008) h = −4→6
Tmin = 0.736, Tmax = 0.913 k = −10→10
10266 measured reflections l = −14→14

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.082 H-atom parameters constrained
S = 1.03 w = 1/[σ2(Fo2) + (0.0364P)2 + 0.2704P] where P = (Fo2 + 2Fc2)/3
1983 reflections (Δ/σ)max < 0.001
166 parameters Δρmax = 0.21 e Å3
0 restraints Δρmin = −0.17 e Å3

Special details

Experimental. Analytical data: 1H NMR (CDCl3, 400 MHZ): δ 7.55 (d, 1H), 6.69 (s, 1H), 6.66 (s, 1H), 4.74 (s, 2H), 4.36 (s, 1H), 3.26 (s, 1H), 2.58 (s, 1H), 1.33 (s, 3H), 1.18 (s, 3H); 13C NMR (CDCl3, 400 MHZ): δ 199.0, 175.0, 166.2, 125.4, 115.5, 112.1, 97.4, 89.8, 72.3, 56.3, 25.9, 23.9.The intensity data was collected on a Bruker Apex DUO 4 K CCD diffractometer using an exposure time of 5 s/frame. A total of 4558 frames were collected with a frame width of 1° covering up to θ = 66.28° with 95.2% completeness accomplished.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.2006 (3) 0.84616 (15) 0.02726 (11) 0.0261 (3)
H1 0.1077 0.8209 −0.0259 0.031*
C2 0.3167 (2) 0.87773 (14) 0.09371 (10) 0.0223 (3)
C3 0.4670 (2) 0.91785 (15) 0.17253 (10) 0.0223 (3)
H3A 0.6387 0.9299 0.1339 0.027*
H3B 0.3894 1.0148 0.2026 0.027*
C4 0.2852 (2) 0.80294 (13) 0.34321 (10) 0.0172 (3)
C5 0.0548 (2) 0.89754 (13) 0.34541 (10) 0.0189 (3)
H5 0.0309 0.9688 0.2866 0.023*
C6 −0.1355 (2) 0.88612 (13) 0.43326 (10) 0.0180 (3)
H6 −0.2907 0.9504 0.4362 0.022*
C7 −0.0975 (2) 0.77883 (13) 0.51799 (10) 0.0167 (3)
C8 0.1301 (2) 0.68501 (13) 0.51207 (10) 0.0164 (3)
C9 0.3268 (2) 0.69443 (13) 0.42660 (10) 0.0177 (3)
H9 0.4822 0.6306 0.4246 0.021*
C10 −0.2529 (2) 0.73992 (13) 0.61999 (10) 0.0173 (3)
C11 −0.0979 (2) 0.60810 (13) 0.67327 (10) 0.0177 (3)
H11 −0.1864 0.5181 0.6763 0.021*
C12 −0.0406 (2) 0.62882 (13) 0.78842 (10) 0.0183 (3)
C13 0.1469 (2) 0.49897 (14) 0.82127 (11) 0.0237 (3)
H13A 0.3049 0.4962 0.7693 0.036*
H13B 0.0765 0.4055 0.8203 0.036*
H13C 0.1802 0.5115 0.8954 0.036*
C14 −0.2814 (2) 0.64049 (15) 0.87195 (10) 0.0233 (3)
H14A −0.2438 0.6637 0.9432 0.035*
H14B −0.3504 0.5455 0.8793 0.035*
H14C −0.4052 0.7198 0.8472 0.035*
O1 0.05931 (15) 0.76695 (9) 0.78783 (7) 0.0193 (2)
H 0.2022 0.7612 0.7486 0.029*
O2 0.14038 (15) 0.58334 (9) 0.59873 (7) 0.0187 (2)
O3 0.48574 (16) 0.80822 (10) 0.26152 (7) 0.0215 (2)
O4 −0.46595 (15) 0.79629 (10) 0.65811 (7) 0.0215 (2)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0272 (7) 0.0300 (7) 0.0206 (7) −0.0034 (6) −0.0019 (5) −0.0033 (5)
C2 0.0241 (7) 0.0221 (6) 0.0176 (6) −0.0009 (5) 0.0036 (5) 0.0003 (5)
C3 0.0251 (7) 0.0247 (7) 0.0167 (6) −0.0065 (5) −0.0002 (5) 0.0016 (5)
C4 0.0184 (6) 0.0194 (6) 0.0144 (6) −0.0047 (5) −0.0010 (5) −0.0043 (5)
C5 0.0222 (6) 0.0188 (6) 0.0161 (6) −0.0023 (5) −0.0050 (5) −0.0006 (5)
C6 0.0173 (6) 0.0185 (6) 0.0187 (6) −0.0003 (5) −0.0047 (5) −0.0033 (5)
C7 0.0163 (6) 0.0180 (6) 0.0166 (6) −0.0030 (4) −0.0035 (5) −0.0038 (5)
C8 0.0204 (6) 0.0151 (6) 0.0150 (6) −0.0034 (5) −0.0049 (5) −0.0024 (4)
C9 0.0171 (6) 0.0186 (6) 0.0175 (6) −0.0002 (5) −0.0034 (5) −0.0038 (5)
C10 0.0166 (6) 0.0197 (6) 0.0174 (6) −0.0050 (5) −0.0041 (5) −0.0041 (5)
C11 0.0161 (6) 0.0187 (6) 0.0176 (6) −0.0037 (5) 0.0003 (5) −0.0010 (5)
C12 0.0184 (6) 0.0195 (6) 0.0171 (6) −0.0046 (5) −0.0021 (5) 0.0010 (5)
C13 0.0242 (7) 0.0239 (7) 0.0220 (7) −0.0013 (5) −0.0043 (5) 0.0033 (5)
C14 0.0214 (7) 0.0302 (7) 0.0175 (6) −0.0045 (5) −0.0013 (5) 0.0024 (5)
O1 0.0183 (5) 0.0207 (5) 0.0188 (4) −0.0044 (3) −0.0002 (3) −0.0024 (3)
O2 0.0204 (5) 0.0182 (4) 0.0156 (4) 0.0009 (3) −0.0002 (3) 0.0006 (3)
O3 0.0197 (5) 0.0272 (5) 0.0155 (4) −0.0010 (3) 0.0005 (3) 0.0015 (3)
O4 0.0154 (5) 0.0279 (5) 0.0203 (5) −0.0017 (3) −0.0014 (3) −0.0012 (4)

Geometric parameters (Å, º)

C1—C2 1.187 (2) C9—H9 0.95
C1—H1 0.95 C10—O4 1.2264 (15)
C2—C3 1.4647 (18) C10—C11 1.5338 (17)
C3—O3 1.4339 (15) C11—O2 1.4561 (14)
C3—H3A 0.99 C11—C12 1.5359 (17)
C3—H3B 0.99 C11—H11 1
C4—O3 1.3586 (14) C12—O1 1.4339 (14)
C4—C9 1.3952 (17) C12—C14 1.5198 (17)
C4—C5 1.4092 (18) C12—C13 1.5206 (17)
C5—C6 1.3767 (17) C13—H13A 0.98
C5—H5 0.95 C13—H13B 0.98
C6—C7 1.3968 (17) C13—H13C 0.98
C6—H6 0.95 C14—H14A 0.98
C7—C8 1.3906 (17) C14—H14B 0.98
C7—C10 1.4454 (17) C14—H14C 0.98
C8—O2 1.3640 (15) O1—H 0.84
C8—C9 1.3777 (17)
C2—C1—H1 180 C7—C10—C11 105.72 (10)
C1—C2—C3 177.97 (13) O2—C11—C10 105.17 (9)
O3—C3—C2 112.50 (10) O2—C11—C12 108.40 (9)
O3—C3—H3A 109.1 C10—C11—C12 116.67 (10)
C2—C3—H3A 109.1 O2—C11—H11 108.8
O3—C3—H3B 109.1 C10—C11—H11 108.8
C2—C3—H3B 109.1 C12—C11—H11 108.8
H3A—C3—H3B 107.8 O1—C12—C14 106.41 (10)
O3—C4—C9 113.90 (10) O1—C12—C13 110.61 (10)
O3—C4—C5 123.96 (11) C14—C12—C13 110.22 (10)
C9—C4—C5 122.14 (11) O1—C12—C11 109.16 (9)
C6—C5—C4 119.68 (11) C14—C12—C11 110.66 (10)
C6—C5—H5 120.2 C13—C12—C11 109.74 (10)
C4—C5—H5 120.2 C12—C13—H13A 109.5
C5—C6—C7 119.14 (11) C12—C13—H13B 109.5
C5—C6—H6 120.4 H13A—C13—H13B 109.5
C7—C6—H6 120.4 C12—C13—H13C 109.5
C8—C7—C6 119.71 (11) H13A—C13—H13C 109.5
C8—C7—C10 107.37 (10) H13B—C13—H13C 109.5
C6—C7—C10 132.92 (11) C12—C14—H14A 109.5
O2—C8—C9 123.28 (11) C12—C14—H14B 109.5
O2—C8—C7 113.74 (10) H14A—C14—H14B 109.5
C9—C8—C7 122.98 (11) C12—C14—H14C 109.5
C8—C9—C4 116.33 (11) H14A—C14—H14C 109.5
C8—C9—H9 121.8 H14B—C14—H14C 109.5
C4—C9—H9 121.8 C12—O1—H 109.5
O4—C10—C7 128.78 (11) C8—O2—C11 107.95 (9)
O4—C10—C11 125.50 (11) C4—O3—C3 118.88 (9)
O3—C4—C5—C6 −178.39 (10) O4—C10—C11—O2 −179.31 (10)
C9—C4—C5—C6 1.43 (18) C7—C10—C11—O2 1.55 (12)
C4—C5—C6—C7 −1.02 (17) O4—C10—C11—C12 −59.16 (16)
C5—C6—C7—C8 −0.40 (17) C7—C10—C11—C12 121.70 (11)
C5—C6—C7—C10 178.94 (12) O2—C11—C12—O1 68.57 (11)
C6—C7—C8—O2 −178.57 (10) C10—C11—C12—O1 −49.84 (13)
C10—C7—C8—O2 1.93 (14) O2—C11—C12—C14 −174.64 (9)
C6—C7—C8—C9 1.55 (18) C10—C11—C12—C14 66.94 (13)
C10—C7—C8—C9 −177.94 (11) O2—C11—C12—C13 −52.79 (12)
O2—C8—C9—C4 178.99 (10) C10—C11—C12—C13 −171.21 (10)
C7—C8—C9—C4 −1.15 (18) C9—C8—O2—C11 178.98 (10)
O3—C4—C9—C8 179.49 (10) C7—C8—O2—C11 −0.89 (13)
C5—C4—C9—C8 −0.34 (17) C10—C11—O2—C8 −0.46 (12)
C8—C7—C10—O4 178.84 (12) C12—C11—O2—C8 −125.94 (10)
C6—C7—C10—O4 −0.6 (2) C9—C4—O3—C3 −178.56 (10)
C8—C7—C10—C11 −2.06 (12) C5—C4—O3—C3 1.28 (17)
C6—C7—C10—C11 178.53 (12) C2—C3—O3—C4 −76.90 (13)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O1—H···O4i 0.84 2.01 2.8328 (12) 167
C1—H1···O1ii 0.95 2.45 3.3283 (16) 154
C5—H5···O1iii 0.95 2.52 3.3809 (15) 152

Symmetry codes: (i) x+1, y, z; (ii) x, y, z−1; (iii) −x, −y+2, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: IS5212).

References

  1. Bruker (2008). SADABS and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Bruker (2011). APEX2 Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
  4. Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838.
  5. Hoogendoorn, S., Blom, A. E. M., Willems, L. I., Van der Marel, G. A. & Overkleeft, H. S. (2011). Org. Lett. 13, 5656–5659. [DOI] [PubMed]
  6. Morphy, R., Kay, C. & Rankovic, Z. (2004). Drug Discov. Today, 9, 641–651. [DOI] [PubMed]
  7. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812045606/is5212sup1.cif

e-68-o3379-sup1.cif (22.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812045606/is5212Isup2.hkl

e-68-o3379-Isup2.hkl (95.5KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812045606/is5212Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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