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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Nov 24;68(Pt 12):o3403. doi: 10.1107/S1600536812046715

(E)-3-(3,5-Dimeth­oxy­phen­yl)-1-(1-hy­droxy­naphthalen-2-yl)prop-2-en-1-one

Ha-Jin Lee a, Yoongho Lim b, Dongsoo Koh c,*
PMCID: PMC3588993  PMID: 23476229

Abstract

In the title mol­ecule, C21H18O4, the C=C bond of the central enone group adopts a trans conformation. The dihedral angle formed by the naphthalene ring system and the benzene ring is 2.97 (11)°. The hy­droxy group is involved in an intra­molecular O—H⋯O hydrogen bond. In the crystal, weak C—H⋯O hydrogen bonds link the mol­ecules into chains along [001].

Related literature  

For the synthesis and biological properties of chalcone derivatives, see: Sharma et al. (2012); Singh et al. (2012); Bandgar et al. (2010); Hans et al. (2010); Hwang et al. (2011). For related structures, see: Fadzillah et al. (2012); Jasinski et al. (2011). For standard bond lengths, see: Allen et al. (1987).graphic file with name e-68-o3403-scheme1.jpg

Experimental  

Crystal data  

  • C21H18O4

  • M r = 334.35

  • Orthorhombic, Inline graphic

  • a = 30.179 (3) Å

  • b = 3.9127 (3) Å

  • c = 13.7363 (12) Å

  • V = 1622.0 (2) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 200 K

  • 0.24 × 0.22 × 0.17 mm

Data collection  

  • Bruker SMART CCD diffractometer

  • 11095 measured reflections

  • 3479 independent reflections

  • 1828 reflections with I > 2σ(I)

  • R int = 0.064

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.044

  • wR(F 2) = 0.102

  • S = 0.94

  • 3479 reflections

  • 229 parameters

  • 1 restraint

  • H-atom parameters constrained

  • Δρmax = 0.22 e Å−3

  • Δρmin = −0.23 e Å−3

Data collection: SMART (Bruker, 2000); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812046715/lh5555sup1.cif

e-68-o3403-sup1.cif (19.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812046715/lh5555Isup2.hkl

e-68-o3403-Isup2.hkl (170.6KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812046715/lh5555Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O4—H4⋯O1 0.84 1.75 2.503 (3) 147
C7—H7C⋯O1i 0.98 2.59 3.157 (4) 117
C10—H10B⋯O2i 0.98 2.54 3.344 (4) 139

Symmetry code: (i) Inline graphic.

supplementary crystallographic information

Comment

Chalcones are one of the secondary metabolites in plants and belong to a flavonoid class with a C6—C3—C6 skeleton and C3 skeleton which is an α,β-unsaturated carbonyl (enone) group. Because of their diverse biological activities including anticancer (Singh et al., 2012), anti-inflammatory (Bandgar et al., 2010), anti-tubercular (Hans et al., 2010), and antimicrobial (Sharma et al., 2012), various chlacones have been isolated from natural sources and syntheized. In continuation of our research to develop novel chalcone derivatives which show broad range of biological activities (Hwang et al., 2011) the title compound was synthesized and and its crystal structure was determined.

The molecular structure of the title compound is shown in Fig .1. The C2═C3 bond of the central enone group adopts a trans configuration. The dihedral angle formed by the naphthalene ring system and the benzene ring is 2.97 (11)°. The C1═O1 bond [1.242 (3) Å] is slightly longer than the standard value (Allen et al. 1987) as this group is involved in an intramolecular O—H···O hydrogen bond with the hydroxy group. In the crystal, weak C—H···O hydrogen bonds link the molecules into one-dimensional chains along [001] (Fig. 2). Examples of structures of substituted prop-2-en-1-one compounds have been published (Fadzillah et al., 2012; Jasinski et al., 2011).

Experimental

A solution of 1-hydroxy-2-acetonaphthone (186 mg, 1 mmol) and 3,5-dimethoxybenzaldehyde (166 mg, 1 mmol) was dissolved in 10 ml of ethanol and the temperature was adjusted to around 276-277K in an ice-bath. To the cooled reaction mixture was added 0.5 ml of 50% aqueous KOH solution, and the reaction mixture was stirred at room temperature for 24 h. This mixture was poured into iced water (20 ml) was acidified with 6 N HCl solution. The mixture was extracted with ethylacetate (3 × 20 ml) and the combined organic layers were dried under MgSO4. Filtration and evaporation of the filtrate gave a residue which was purified by flash chromatography to give the title compound (210 mg, 63%). Recrystallization of the title compound in ethanol gave orange colored crystals (mp: 422-424K).

Refinement

H atoms were placed in calculated positions and refined as riding with C—H = 0.95-0.98Å, O—H = 0.84 Å and Uiso(H) = 1.2 Ueq(C) or Uiso(H) = 1.5Ueq(Cmethyl, O).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, showing displacement ellipsoids drawn at the 50% probability level. The dashed line indicates a hydrogen bond.

Fig. 2.

Fig. 2.

Part of the crystal structure with weak intermolecular C—H···O hydrogen bonds shown as dashed lines.

Crystal data

C21H18O4 F(000) = 704
Mr = 334.35 Dx = 1.369 Mg m3
Orthorhombic, Pna21 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2n Cell parameters from 2578 reflections
a = 30.179 (3) Å θ = 2.7–27.8°
b = 3.9127 (3) Å µ = 0.09 mm1
c = 13.7363 (12) Å T = 200 K
V = 1622.0 (2) Å3 Block, orange
Z = 4 0.24 × 0.22 × 0.17 mm

Data collection

Bruker SMART CCD diffractometer 1828 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.064
Graphite monochromator θmax = 28.3°, θmin = 1.4°
φ and ω scans h = −32→40
11095 measured reflections k = −5→5
3479 independent reflections l = −16→18

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102 H-atom parameters constrained
S = 0.94 w = 1/[σ2(Fo2) + (0.0276P)2] where P = (Fo2 + 2Fc2)/3
3479 reflections (Δ/σ)max < 0.001
229 parameters Δρmax = 0.22 e Å3
1 restraint Δρmin = −0.23 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.35700 (10) 0.8619 (7) 0.4892 (2) 0.0348 (7)
O1 0.36736 (7) 0.9296 (6) 0.57454 (14) 0.0485 (6)
C2 0.38738 (10) 0.9586 (8) 0.4096 (2) 0.0362 (8)
H2 0.3791 0.9009 0.3449 0.043*
C3 0.42532 (10) 1.1203 (7) 0.4228 (2) 0.0352 (7)
H3 0.4326 1.1809 0.4878 0.042*
C4 0.45715 (10) 1.2153 (7) 0.3474 (2) 0.0312 (7)
C5 0.49588 (10) 1.3745 (7) 0.3726 (2) 0.0340 (7)
H5 0.5011 1.4326 0.4388 0.041*
C6 0.52799 (10) 1.4530 (7) 0.3019 (2) 0.0335 (8)
O2 0.56629 (7) 1.5970 (6) 0.33591 (14) 0.0424 (6)
C7 0.59853 (11) 1.7037 (8) 0.2650 (2) 0.0420 (9)
H7A 0.6101 1.5029 0.2307 0.063*
H7B 0.6229 1.8220 0.2979 0.063*
H7C 0.5846 1.8587 0.2182 0.063*
C8 0.52006 (10) 1.3789 (7) 0.2050 (2) 0.0334 (7)
H8 0.5414 1.4332 0.1565 0.040*
C9 0.48010 (10) 1.2229 (7) 0.1799 (2) 0.0322 (7)
O3 0.47555 (7) 1.1594 (5) 0.08193 (15) 0.0416 (5)
C10 0.43530 (10) 1.0023 (8) 0.0509 (2) 0.0428 (8)
H10A 0.4337 0.7696 0.0771 0.064*
H10B 0.4345 0.9936 −0.0204 0.064*
H10C 0.4100 1.1357 0.0746 0.064*
C11 0.44877 (10) 1.1405 (7) 0.2483 (2) 0.0343 (8)
H11 0.4218 1.0346 0.2293 0.041*
C12 0.31508 (10) 0.6927 (7) 0.4670 (2) 0.0290 (7)
C13 0.28636 (10) 0.6041 (8) 0.5424 (2) 0.0319 (7)
O4 0.29656 (7) 0.6743 (6) 0.63545 (14) 0.0437 (6)
H4 0.3204 0.7843 0.6375 0.066*
C14 0.24525 (10) 0.4418 (7) 0.5241 (2) 0.0311 (7)
C15 0.21607 (10) 0.3500 (8) 0.6006 (2) 0.0377 (8)
H15 0.2241 0.3941 0.6663 0.045*
C16 0.17643 (10) 0.1979 (8) 0.5797 (2) 0.0408 (8)
H16 0.1568 0.1392 0.6311 0.049*
C17 0.16454 (10) 0.1281 (8) 0.4837 (2) 0.0398 (8)
H17 0.1368 0.0242 0.4702 0.048*
C18 0.19236 (11) 0.2075 (8) 0.4093 (2) 0.0366 (8)
H18 0.1841 0.1533 0.3444 0.044*
C19 0.23315 (10) 0.3683 (7) 0.4268 (2) 0.0293 (7)
C20 0.26243 (10) 0.4564 (7) 0.3506 (2) 0.0360 (8)
H20 0.2545 0.4061 0.2852 0.043*
C21 0.30156 (10) 0.6117 (8) 0.3696 (2) 0.0351 (8)
H21 0.3206 0.6686 0.3170 0.042*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0311 (19) 0.0388 (19) 0.0344 (19) −0.0019 (15) −0.0011 (14) 0.0023 (16)
O1 0.0434 (15) 0.0720 (17) 0.0302 (13) −0.0130 (12) −0.0004 (10) −0.0007 (12)
C2 0.0288 (19) 0.049 (2) 0.0312 (18) −0.0061 (15) 0.0035 (13) −0.0010 (15)
C3 0.035 (2) 0.0414 (19) 0.0297 (16) −0.0024 (16) −0.0001 (15) 0.0006 (16)
C4 0.0289 (18) 0.0324 (18) 0.0324 (18) 0.0014 (14) −0.0023 (14) 0.0011 (14)
C5 0.0316 (19) 0.0379 (19) 0.0324 (17) −0.0025 (15) 0.0020 (14) 0.0014 (15)
C6 0.0286 (19) 0.0322 (18) 0.0396 (19) −0.0001 (14) −0.0033 (14) 0.0036 (15)
O2 0.0314 (13) 0.0531 (14) 0.0428 (14) −0.0114 (11) −0.0010 (11) 0.0022 (11)
C7 0.031 (2) 0.043 (2) 0.052 (2) −0.0077 (16) 0.0043 (16) 0.0082 (17)
C8 0.0286 (19) 0.0368 (18) 0.0348 (18) −0.0012 (14) 0.0022 (14) 0.0004 (15)
C9 0.0363 (19) 0.0325 (17) 0.0279 (18) 0.0032 (14) −0.0055 (14) 0.0035 (14)
O3 0.0376 (14) 0.0555 (15) 0.0316 (12) −0.0060 (11) −0.0007 (10) −0.0017 (11)
C10 0.042 (2) 0.049 (2) 0.0380 (19) −0.0040 (17) −0.0094 (15) −0.0001 (15)
C11 0.0290 (19) 0.040 (2) 0.0342 (18) −0.0053 (15) 0.0003 (14) 0.0021 (15)
C12 0.0258 (18) 0.0345 (18) 0.0266 (16) −0.0016 (14) −0.0005 (13) 0.0018 (14)
C13 0.0304 (19) 0.0373 (18) 0.0281 (17) −0.0001 (14) 0.0012 (14) −0.0002 (15)
O4 0.0414 (16) 0.0659 (16) 0.0237 (12) −0.0129 (12) −0.0014 (10) −0.0015 (11)
C14 0.0303 (19) 0.0304 (16) 0.0326 (18) 0.0000 (14) 0.0012 (13) 0.0024 (14)
C15 0.036 (2) 0.045 (2) 0.0329 (19) −0.0040 (15) 0.0036 (14) 0.0042 (15)
C16 0.035 (2) 0.045 (2) 0.042 (2) −0.0020 (16) 0.0060 (16) 0.0032 (17)
C17 0.029 (2) 0.0414 (19) 0.049 (2) −0.0073 (15) 0.0001 (16) −0.0013 (17)
C18 0.034 (2) 0.038 (2) 0.0383 (19) −0.0013 (15) −0.0026 (14) 0.0020 (15)
C19 0.0282 (18) 0.0269 (16) 0.0329 (16) −0.0012 (13) 0.0003 (14) 0.0009 (14)
C20 0.035 (2) 0.0434 (19) 0.0293 (17) −0.0006 (15) −0.0047 (14) −0.0002 (15)
C21 0.0327 (19) 0.045 (2) 0.0279 (17) −0.0018 (15) 0.0016 (14) 0.0014 (15)

Geometric parameters (Å, º)

C1—O1 1.242 (3) C10—H10B 0.9800
C1—C12 1.460 (4) C10—H10C 0.9800
C1—C2 1.476 (4) C11—H11 0.9500
C2—C3 1.321 (4) C12—C13 1.395 (4)
C2—H2 0.9500 C12—C21 1.433 (4)
C3—C4 1.460 (4) C13—O4 1.343 (3)
C3—H3 0.9500 C13—C14 1.416 (4)
C4—C5 1.369 (4) O4—H4 0.8400
C4—C11 1.416 (4) C14—C19 1.414 (4)
C5—C6 1.406 (4) C14—C15 1.418 (4)
C5—H5 0.9500 C15—C16 1.367 (4)
C6—O2 1.368 (3) C15—H15 0.9500
C6—C8 1.384 (4) C16—C17 1.394 (4)
O2—C7 1.438 (3) C16—H16 0.9500
C7—H7A 0.9800 C17—C18 1.359 (4)
C7—H7B 0.9800 C17—H17 0.9500
C7—H7C 0.9800 C18—C19 1.403 (4)
C8—C9 1.395 (4) C18—H18 0.9500
C8—H8 0.9500 C19—C20 1.413 (4)
C9—C11 1.371 (4) C20—C21 1.354 (4)
C9—O3 1.375 (3) C20—H20 0.9500
O3—C10 1.427 (3) C21—H21 0.9500
C10—H10A 0.9800
O1—C1—C12 120.8 (3) H10A—C10—H10C 109.5
O1—C1—C2 119.2 (3) H10B—C10—H10C 109.5
C12—C1—C2 120.0 (3) C9—C11—C4 119.2 (3)
C3—C2—C1 124.1 (3) C9—C11—H11 120.4
C3—C2—H2 118.0 C4—C11—H11 120.4
C1—C2—H2 118.0 C13—C12—C21 117.5 (3)
C2—C3—C4 126.5 (3) C13—C12—C1 119.7 (3)
C2—C3—H3 116.7 C21—C12—C1 122.8 (3)
C4—C3—H3 116.7 O4—C13—C12 120.9 (3)
C5—C4—C11 119.3 (3) O4—C13—C14 117.5 (2)
C5—C4—C3 119.9 (3) C12—C13—C14 121.6 (3)
C11—C4—C3 120.8 (3) C13—O4—H4 109.5
C4—C5—C6 120.9 (3) C19—C14—C13 119.0 (3)
C4—C5—H5 119.6 C19—C14—C15 119.2 (3)
C6—C5—H5 119.6 C13—C14—C15 121.7 (3)
O2—C6—C8 124.1 (3) C16—C15—C14 119.9 (3)
O2—C6—C5 115.9 (3) C16—C15—H15 120.0
C8—C6—C5 120.0 (3) C14—C15—H15 120.0
C6—O2—C7 117.4 (2) C15—C16—C17 120.6 (3)
O2—C7—H7A 109.5 C15—C16—H16 119.7
O2—C7—H7B 109.5 C17—C16—H16 119.7
H7A—C7—H7B 109.5 C18—C17—C16 120.5 (3)
O2—C7—H7C 109.5 C18—C17—H17 119.7
H7A—C7—H7C 109.5 C16—C17—H17 119.7
H7B—C7—H7C 109.5 C17—C18—C19 121.0 (3)
C6—C8—C9 118.6 (3) C17—C18—H18 119.5
C6—C8—H8 120.7 C19—C18—H18 119.5
C9—C8—H8 120.7 C18—C19—C20 122.0 (3)
C11—C9—O3 124.0 (3) C18—C19—C14 118.7 (3)
C11—C9—C8 122.0 (3) C20—C19—C14 119.3 (3)
O3—C9—C8 114.0 (3) C21—C20—C19 120.8 (3)
C9—O3—C10 117.1 (2) C21—C20—H20 119.6
O3—C10—H10A 109.5 C19—C20—H20 119.6
O3—C10—H10B 109.5 C20—C21—C12 121.9 (3)
H10A—C10—H10B 109.5 C20—C21—H21 119.1
O3—C10—H10C 109.5 C12—C21—H21 119.1
O1—C1—C2—C3 −1.1 (5) C21—C12—C13—O4 −179.4 (3)
C12—C1—C2—C3 178.1 (3) C1—C12—C13—O4 0.5 (4)
C1—C2—C3—C4 178.4 (3) C21—C12—C13—C14 −0.3 (4)
C2—C3—C4—C5 −178.1 (3) C1—C12—C13—C14 179.6 (3)
C2—C3—C4—C11 1.0 (5) O4—C13—C14—C19 179.1 (3)
C11—C4—C5—C6 −2.3 (5) C12—C13—C14—C19 0.0 (4)
C3—C4—C5—C6 176.8 (3) O4—C13—C14—C15 −1.2 (4)
C4—C5—C6—O2 −177.0 (3) C12—C13—C14—C15 179.7 (3)
C4—C5—C6—C8 2.0 (4) C19—C14—C15—C16 −1.2 (5)
C8—C6—O2—C7 5.5 (4) C13—C14—C15—C16 179.1 (3)
C5—C6—O2—C7 −175.6 (3) C14—C15—C16—C17 0.8 (5)
O2—C6—C8—C9 178.2 (3) C15—C16—C17—C18 0.6 (5)
C5—C6—C8—C9 −0.7 (4) C16—C17—C18—C19 −1.5 (5)
C6—C8—C9—C11 −0.3 (4) C17—C18—C19—C20 −179.3 (3)
C6—C8—C9—O3 −179.8 (3) C17—C18—C19—C14 1.0 (4)
C11—C9—O3—C10 0.9 (4) C13—C14—C19—C18 180.0 (3)
C8—C9—O3—C10 −179.6 (2) C15—C14—C19—C18 0.3 (4)
O3—C9—C11—C4 179.4 (3) C13—C14—C19—C20 0.4 (4)
C8—C9—C11—C4 −0.1 (4) C15—C14—C19—C20 −179.3 (3)
C5—C4—C11—C9 1.3 (5) C18—C19—C20—C21 179.9 (3)
C3—C4—C11—C9 −177.8 (3) C14—C19—C20—C21 −0.4 (4)
O1—C1—C12—C13 −0.4 (4) C19—C20—C21—C12 0.1 (4)
C2—C1—C12—C13 −179.6 (3) C13—C12—C21—C20 0.3 (4)
O1—C1—C12—C21 179.5 (3) C1—C12—C21—C20 −179.6 (3)
C2—C1—C12—C21 0.3 (4)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O4—H4···O1 0.84 1.75 2.503 (3) 147
C7—H7C···O1i 0.98 2.59 3.157 (4) 117
C10—H10B···O2i 0.98 2.54 3.344 (4) 139

Symmetry code: (i) −x+1, −y+3, z−1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH5555).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812046715/lh5555sup1.cif

e-68-o3403-sup1.cif (19.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812046715/lh5555Isup2.hkl

e-68-o3403-Isup2.hkl (170.6KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812046715/lh5555Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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