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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Nov 24;68(Pt 12):o3411. doi: 10.1107/S1600536812047174

Morpholine–4-nitro­phenol (1/2)

Srinivasan Muralidharan a, Yechuri Vidyalakshmi a, Thothadri Srinivasan b, Rengasamy Gopalakrishnan a, Devadasan Velmurugan b,*
PMCID: PMC3588998  PMID: 23476234

Abstract

In the title adduct, 2C6H5NO3·C4H9NO, the morpholine ring adopts a chair conformation. The dihedral angle between the two nitro­phenol rings is 69.47 (9)°. The nitro groups attached to the benzene rings make dihedral angles of 3.37 (16) and 3.14 (13)° in the two mol­ecules of nitro­phenol. The crystal structure is stabilized by N—H⋯O, O—H⋯N and O—H⋯O hydrogen bonds and further consolidated by C—H⋯O inter­actions, resulting in a three-dimensional network.

Related literature  

For the biological activity and synthesis of 4-(4-nitro­phen­yl)–morpholine derivatives, see: Wang et al. (2010). For a related structure, see: Wang et al. (2012).graphic file with name e-68-o3411-scheme1.jpg

Experimental  

Crystal data  

  • 2C6H5NO3·C4H9NO

  • M r = 365.34

  • Monoclinic, Inline graphic

  • a = 18.0381 (7) Å

  • b = 5.5673 (2) Å

  • c = 17.4910 (7) Å

  • β = 91.606 (3)°

  • V = 1755.82 (12) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.11 mm−1

  • T = 293 K

  • 0.35 × 0.30 × 0.25 mm

Data collection  

  • Bruker SMART APEXII area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2008) T min = 0.963, T max = 0.973

  • 16662 measured reflections

  • 4354 independent reflections

  • 2987 reflections with I > 2σ(I)

  • R int = 0.027

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.052

  • wR(F 2) = 0.151

  • S = 1.05

  • 4354 reflections

  • 239 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.45 e Å−3

  • Δρmin = −0.30 e Å−3

Data collection: APEX2 (Bruker, 2008); cell refinement: SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 2012); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812047174/pv2605sup1.cif

e-68-o3411-sup1.cif (26.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812047174/pv2605Isup2.hkl

e-68-o3411-Isup2.hkl (209KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N3—H3B⋯O7i 0.77 (2) 2.46 (2) 3.000 (2) 129 (2)
N3—H3B⋯O4ii 0.77 (2) 2.36 (2) 3.032 (2) 147 (2)
C14—H14B⋯O4ii 0.97 2.55 3.322 (3) 136
O3—H3A⋯O6 0.82 1.77 2.590 (2) 173
O6—H6A⋯N3 0.82 1.93 2.607 (2) 140
C6—H6⋯O2iii 0.93 2.53 3.424 (3) 161
C14—H14A⋯O5iv 0.97 2.49 3.403 (3) 157
C15—H15B⋯O1v 0.97 2.48 3.400 (3) 159
C16—H16B⋯O2vi 0.97 2.56 3.441 (3) 152

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic; (vi) Inline graphic.

Acknowledgments

The authors thank the TBI X-ray facility, CAS in Crystallography and Biophysics, University of Madras, India, for the data collection and TS also thanks the DST for an Inspire fellowship.

supplementary crystallographic information

Comment

4-(4-Nitrophenyl)morpholine derivatives are of great importance due to their anticancer activity (Wang et al., 2010). The title adduct is a key intermediate in the synthetic investigations of antitumor drugs. We report the preparation and crystal structure of the title adduct in this paper.

In the title adduct (Fig. 1), the morpholine ring adopts a chair conformation. The dihedral angle between the two nitrophenol rings is 69.47 (9)°. The nitro group attached with the benzene ring (C1–C6) makes a dihedral angle of 3.37 (16)°, while the other nitro group attached with the other benzene ring (C7–C12) makes a dihedral angle of 3.14 (13)°. The crystal structure is stabilzied by intermolecular interactions of the types N—H···O and O—H···O and further consolidated by C—H···O intermolcular hydrogen bonds (Tab. 1 & Fig. 2) resulting in a 3-dimensional network.

Experimental

Morpholine and 4-Nitrophenol were taken in equimolar (1:1) ratio using ethanol as solvent. The solution was filtered in a clean beaker and optimally closed. The solution was kept at room temperature. After two weeks, a product was obtained which was subsequently recrystallised from ethanol resulting in yellow coloured crystals suitable for X-ray diffraction.

Refinement

All C-bound H atoms were positioned geometrically and refined using a riding model, with C—H = 0.93 and 0.97 Å, for aryl and methylene H-atoms, respectively. The hydroxyl H-atoms were included at geometrically calculated positions with O—H = 0.82 Å. The H-atom bonded to N3 was located from a difference map and allowed to refine freely. The Uiso(H) were allowed at 1.5Ueq(O) or 1.2Ueq(C/N).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, showing displacement ellipsoids drawn at the 30% probability level. H atoms are presented as small spheres of arbitrary radius.

Fig. 2.

Fig. 2.

A view of the hydrogen bonds (dotted lines) in the crystal structure of the title compound. H atoms non-participating in hydrogen- bonding were omitted for clarity.

Crystal data

2C6H5NO3·C4H9NO F(000) = 768
Mr = 365.34 Dx = 1.382 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 4354 reflections
a = 18.0381 (7) Å θ = 1.1–28.4°
b = 5.5673 (2) Å µ = 0.11 mm1
c = 17.4910 (7) Å T = 293 K
β = 91.606 (3)° Block, colourless
V = 1755.82 (12) Å3 0.35 × 0.30 × 0.25 mm
Z = 4

Data collection

Bruker SMART APEXII area-detector diffractometer 4354 independent reflections
Radiation source: fine-focus sealed tube 2987 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.027
ω and φ scans θmax = 28.4°, θmin = 1.1°
Absorption correction: multi-scan (SADABS; Bruker, 2008) h = −24→24
Tmin = 0.963, Tmax = 0.973 k = −7→7
16662 measured reflections l = −23→22

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.151 H atoms treated by a mixture of independent and constrained refinement
S = 1.05 w = 1/[σ2(Fo2) + (0.0638P)2 + 0.4643P] where P = (Fo2 + 2Fc2)/3
4354 reflections (Δ/σ)max < 0.001
239 parameters Δρmax = 0.45 e Å3
0 restraints Δρmin = −0.30 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.53902 (9) 0.5777 (3) 0.10103 (10) 0.0565 (4)
C2 0.55081 (10) 0.3693 (4) 0.14223 (11) 0.0648 (5)
H2 0.5982 0.3048 0.1474 0.078*
C3 0.49232 (10) 0.2585 (4) 0.17542 (12) 0.0659 (5)
H3 0.5001 0.1191 0.2038 0.079*
C4 0.42092 (10) 0.3533 (3) 0.16694 (10) 0.0560 (4)
C5 0.41037 (10) 0.5620 (3) 0.12451 (11) 0.0616 (5)
H5 0.3630 0.6260 0.1183 0.074*
C6 0.46899 (10) 0.6747 (4) 0.09170 (11) 0.0628 (5)
H6 0.4617 0.8148 0.0635 0.075*
C7 0.13017 (10) 0.8918 (3) 0.31527 (9) 0.0553 (4)
C8 0.09076 (10) 0.7063 (4) 0.28005 (10) 0.0588 (4)
H8 0.0404 0.6875 0.2884 0.071*
C9 0.12639 (9) 0.5524 (3) 0.23317 (10) 0.0539 (4)
H9 0.0996 0.4294 0.2093 0.065*
C10 0.20240 (9) 0.5739 (3) 0.21978 (9) 0.0469 (4)
C11 0.24071 (10) 0.7647 (4) 0.25620 (10) 0.0585 (4)
H11 0.2911 0.7845 0.2483 0.070*
C12 0.20488 (11) 0.9213 (3) 0.30297 (10) 0.0624 (5)
H12 0.2308 1.0470 0.3264 0.075*
C13 0.11073 (9) 0.0465 (3) 0.07932 (11) 0.0572 (4)
H13A 0.0692 0.1572 0.0801 0.069*
H13B 0.1164 −0.0247 0.1298 0.069*
C14 0.09471 (11) −0.1474 (3) 0.02155 (12) 0.0629 (5)
H14A 0.0513 −0.2372 0.0364 0.076*
H14B 0.0839 −0.0750 −0.0280 0.076*
C15 0.21931 (12) −0.1788 (4) −0.00757 (13) 0.0739 (6)
H15A 0.2090 −0.1040 −0.0568 0.089*
H15B 0.2600 −0.2907 −0.0134 0.089*
C16 0.24145 (10) 0.0101 (3) 0.04962 (11) 0.0594 (5)
H16A 0.2553 −0.0654 0.0979 0.071*
H16B 0.2841 0.0973 0.0317 0.071*
N1 0.60131 (9) 0.6983 (4) 0.06695 (11) 0.0732 (5)
N2 0.09282 (13) 1.0491 (3) 0.36639 (9) 0.0775 (5)
O7 0.15556 (8) −0.3055 (2) 0.01578 (9) 0.0733 (4)
O1 0.66276 (8) 0.6053 (4) 0.07188 (11) 0.1022 (6)
O2 0.59056 (10) 0.8873 (4) 0.03293 (13) 0.1106 (7)
O3 0.36561 (7) 0.2375 (3) 0.20120 (9) 0.0792 (4)
H3A 0.3265 0.3093 0.1929 0.119*
O4 0.12927 (12) 1.2119 (3) 0.39774 (9) 0.1007 (6)
O5 0.02664 (12) 1.0156 (4) 0.37853 (11) 0.1164 (7)
O6 0.23640 (6) 0.4276 (2) 0.17466 (7) 0.0620 (3)
H6A 0.2068 0.3287 0.1572 0.093*
N3 0.17917 (8) 0.1798 (2) 0.06111 (9) 0.0483 (3)
H3B 0.1748 (10) 0.258 (3) 0.0250 (11) 0.055 (6)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0503 (9) 0.0618 (10) 0.0574 (10) 0.0096 (8) 0.0024 (7) −0.0051 (9)
C2 0.0521 (9) 0.0705 (12) 0.0714 (12) 0.0183 (9) −0.0053 (8) −0.0017 (10)
C3 0.0634 (11) 0.0604 (11) 0.0731 (13) 0.0134 (9) −0.0087 (9) 0.0083 (10)
C4 0.0527 (9) 0.0558 (10) 0.0592 (10) 0.0030 (8) −0.0059 (8) −0.0037 (8)
C5 0.0475 (9) 0.0645 (11) 0.0726 (12) 0.0143 (8) −0.0027 (8) 0.0050 (10)
C6 0.0583 (10) 0.0596 (11) 0.0708 (12) 0.0160 (8) 0.0045 (9) 0.0081 (9)
C7 0.0746 (11) 0.0519 (9) 0.0389 (8) 0.0103 (8) −0.0055 (7) −0.0029 (7)
C8 0.0534 (9) 0.0688 (11) 0.0541 (10) 0.0030 (8) 0.0013 (7) −0.0060 (9)
C9 0.0514 (9) 0.0542 (9) 0.0560 (10) −0.0084 (7) −0.0001 (7) −0.0106 (8)
C10 0.0504 (8) 0.0497 (8) 0.0404 (8) −0.0022 (7) −0.0026 (6) 0.0002 (7)
C11 0.0559 (9) 0.0685 (11) 0.0510 (10) −0.0146 (8) −0.0030 (7) −0.0055 (9)
C12 0.0846 (13) 0.0552 (10) 0.0467 (9) −0.0163 (9) −0.0113 (9) −0.0067 (8)
C13 0.0520 (9) 0.0584 (10) 0.0615 (10) 0.0025 (8) 0.0093 (8) 0.0002 (8)
C14 0.0641 (11) 0.0514 (10) 0.0733 (12) −0.0119 (8) 0.0015 (9) 0.0043 (9)
C15 0.0754 (13) 0.0680 (12) 0.0786 (14) 0.0166 (10) 0.0104 (10) −0.0227 (11)
C16 0.0511 (9) 0.0648 (11) 0.0628 (11) 0.0035 (8) 0.0099 (8) −0.0092 (9)
N1 0.0579 (9) 0.0808 (12) 0.0816 (12) 0.0131 (8) 0.0145 (8) 0.0011 (10)
N2 0.1161 (16) 0.0702 (11) 0.0454 (9) 0.0301 (11) −0.0100 (9) −0.0105 (8)
O7 0.0931 (10) 0.0374 (6) 0.0891 (10) −0.0001 (6) −0.0031 (8) −0.0037 (6)
O1 0.0543 (8) 0.1261 (15) 0.1269 (14) 0.0210 (9) 0.0169 (8) 0.0207 (12)
O2 0.0830 (11) 0.0936 (12) 0.1573 (18) 0.0169 (10) 0.0437 (11) 0.0417 (13)
O3 0.0595 (8) 0.0772 (9) 0.1010 (11) −0.0002 (7) 0.0000 (7) 0.0206 (9)
O4 0.1836 (19) 0.0604 (9) 0.0576 (9) 0.0131 (11) −0.0061 (10) −0.0163 (7)
O5 0.1010 (14) 0.1490 (18) 0.0994 (13) 0.0500 (13) 0.0057 (11) −0.0458 (13)
O6 0.0515 (6) 0.0723 (8) 0.0619 (7) 0.0003 (6) −0.0010 (5) −0.0193 (7)
N3 0.0595 (8) 0.0377 (7) 0.0476 (8) 0.0013 (6) 0.0029 (6) 0.0053 (6)

Geometric parameters (Å, º)

C1—C2 1.379 (3) C12—H12 0.9300
C1—C6 1.379 (2) C13—N3 1.483 (2)
C1—N1 1.451 (2) C13—C14 1.501 (3)
C2—C3 1.366 (3) C13—H13A 0.9700
C2—H2 0.9300 C13—H13B 0.9700
C3—C4 1.396 (2) C14—O7 1.413 (2)
C3—H3 0.9300 C14—H14A 0.9700
C4—O3 1.343 (2) C14—H14B 0.9700
C4—C5 1.389 (3) C15—O7 1.419 (3)
C5—C6 1.369 (3) C15—C16 1.498 (3)
C5—H5 0.9300 C15—H15A 0.9700
C6—H6 0.9300 C15—H15B 0.9700
C7—C12 1.380 (3) C16—N3 1.486 (2)
C7—C8 1.388 (3) C16—H16A 0.9700
C7—N2 1.433 (2) C16—H16B 0.9700
C8—C9 1.360 (2) N1—O2 1.222 (2)
C8—H8 0.9300 N1—O1 1.224 (2)
C9—C10 1.403 (2) N2—O5 1.233 (3)
C9—H9 0.9300 N2—O4 1.238 (2)
C10—O6 1.2998 (19) O3—H3A 0.8200
C10—C11 1.409 (2) O6—H6A 0.8200
C11—C12 1.370 (3) N3—H3B 0.77 (2)
C11—H11 0.9300
C2—C1—C6 121.24 (17) N3—C13—C14 111.17 (14)
C2—C1—N1 119.60 (16) N3—C13—H13A 109.4
C6—C1—N1 119.16 (17) C14—C13—H13A 109.4
C3—C2—C1 119.50 (16) N3—C13—H13B 109.4
C3—C2—H2 120.2 C14—C13—H13B 109.4
C1—C2—H2 120.2 H13A—C13—H13B 108.0
C2—C3—C4 120.37 (18) O7—C14—C13 111.16 (15)
C2—C3—H3 119.8 O7—C14—H14A 109.4
C4—C3—H3 119.8 C13—C14—H14A 109.4
O3—C4—C5 123.20 (16) O7—C14—H14B 109.4
O3—C4—C3 117.78 (17) C13—C14—H14B 109.4
C5—C4—C3 119.02 (17) H14A—C14—H14B 108.0
C6—C5—C4 120.76 (16) O7—C15—C16 111.09 (16)
C6—C5—H5 119.6 O7—C15—H15A 109.4
C4—C5—H5 119.6 C16—C15—H15A 109.4
C5—C6—C1 119.10 (18) O7—C15—H15B 109.4
C5—C6—H6 120.4 C16—C15—H15B 109.4
C1—C6—H6 120.4 H15A—C15—H15B 108.0
C12—C7—C8 120.62 (16) N3—C16—C15 110.39 (15)
C12—C7—N2 120.17 (18) N3—C16—H16A 109.6
C8—C7—N2 119.19 (18) C15—C16—H16A 109.6
C9—C8—C7 119.44 (17) N3—C16—H16B 109.6
C9—C8—H8 120.3 C15—C16—H16B 109.6
C7—C8—H8 120.3 H16A—C16—H16B 108.1
C8—C9—C10 121.85 (16) O2—N1—O1 121.97 (19)
C8—C9—H9 119.1 O2—N1—C1 118.97 (16)
C10—C9—H9 119.1 O1—N1—C1 119.05 (19)
O6—C10—C9 121.87 (15) O5—N2—O4 122.6 (2)
O6—C10—C11 120.85 (15) O5—N2—C7 119.3 (2)
C9—C10—C11 117.26 (15) O4—N2—C7 118.1 (2)
C12—C11—C10 121.06 (17) C14—O7—C15 110.39 (14)
C12—C11—H11 119.5 C4—O3—H3A 109.5
C10—C11—H11 119.5 C10—O6—H6A 109.5
C11—C12—C7 119.76 (16) C13—N3—C16 110.35 (13)
C11—C12—H12 120.1 C13—N3—H3B 113.2 (14)
C7—C12—H12 120.1 C16—N3—H3B 108.0 (14)
C6—C1—C2—C3 −1.0 (3) C10—C11—C12—C7 0.4 (3)
N1—C1—C2—C3 178.82 (18) C8—C7—C12—C11 −0.7 (3)
C1—C2—C3—C4 0.8 (3) N2—C7—C12—C11 177.62 (17)
C2—C3—C4—O3 −179.62 (18) N3—C13—C14—O7 56.0 (2)
C2—C3—C4—C5 −0.2 (3) O7—C15—C16—N3 −57.5 (2)
O3—C4—C5—C6 179.03 (19) C2—C1—N1—O2 −177.4 (2)
C3—C4—C5—C6 −0.4 (3) C6—C1—N1—O2 2.4 (3)
C4—C5—C6—C1 0.3 (3) C2—C1—N1—O1 4.0 (3)
C2—C1—C6—C5 0.4 (3) C6—C1—N1—O1 −176.2 (2)
N1—C1—C6—C5 −179.37 (18) C12—C7—N2—O5 −177.76 (19)
C12—C7—C8—C9 0.1 (3) C8—C7—N2—O5 0.6 (3)
N2—C7—C8—C9 −178.17 (17) C12—C7—N2—O4 1.0 (3)
C7—C8—C9—C10 0.6 (3) C8—C7—N2—O4 179.30 (17)
C8—C9—C10—O6 −179.63 (17) C13—C14—O7—C15 −60.4 (2)
C8—C9—C10—C11 −0.8 (3) C16—C15—O7—C14 61.5 (2)
O6—C10—C11—C12 179.10 (16) C14—C13—N3—C16 −51.7 (2)
C9—C10—C11—C12 0.3 (3) C15—C16—N3—C13 52.3 (2)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N3—H3B···O7i 0.77 (2) 2.46 (2) 3.000 (2) 129 (2)
N3—H3B···O4ii 0.77 (2) 2.36 (2) 3.032 (2) 147 (2)
C14—H14B···O4ii 0.97 2.55 3.322 (3) 136
O3—H3A···O6 0.82 1.77 2.590 (2) 173
O6—H6A···N3 0.82 1.93 2.607 (2) 140
C6—H6···O2iii 0.93 2.53 3.424 (3) 161
C14—H14A···O5iv 0.97 2.49 3.403 (3) 157
C15—H15B···O1v 0.97 2.48 3.400 (3) 159
C16—H16B···O2vi 0.97 2.56 3.441 (3) 152

Symmetry codes: (i) x, y+1, z; (ii) x, −y+3/2, z−1/2; (iii) −x+1, −y+2, −z; (iv) −x, y−3/2, −z+1/2; (v) −x+1, −y, −z; (vi) −x+1, −y+1, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: PV2605).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812047174/pv2605sup1.cif

e-68-o3411-sup1.cif (26.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812047174/pv2605Isup2.hkl

e-68-o3411-Isup2.hkl (209KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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