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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Nov 24;68(Pt 12):o3452. doi: 10.1107/S1600536812047836

N 1-(4-Methyl­phen­yl)piperidine-1,4-dicarboxamide

Arun M Islor a, M R Jagadeesh b, H M Suresh Kumar c, R Ananda Kumari d, Thomas Gerber e, Eric Hosten e, Richard Betz e,*
PMCID: PMC3589029  PMID: 23476265

Abstract

In the title compound, C14H19N3O2, the heterocycle adopts a 1 C 4 conformation with the N atom being one of the flap atoms. In the crystal, classical N—H⋯O hydrogen bonds and C—H⋯O contacts connect the mol­ecules into a three-dimensional network.

Related literature  

For the pharmacological importance of piperidine and its derivatives, see: Chen et al. (2012); Boja et al. (2011); Jakubowska et al. (2012). For puckering analysis of six-membered rings, see: Cremer & Pople (1975); Boeyens (1978). For graph-set analysis of hydrogen bonds, see: Etter et al. (1990); Bernstein et al. (1995).graphic file with name e-68-o3452-scheme1.jpg

Experimental  

Crystal data  

  • C14H19N3O2

  • M r = 261.32

  • Monoclinic, Inline graphic

  • a = 5.0102 (1) Å

  • b = 28.6642 (7) Å

  • c = 10.1131 (2) Å

  • β = 103.113 (1)°

  • V = 1414.50 (5) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.08 mm−1

  • T = 200 K

  • 0.42 × 0.25 × 0.11 mm

Data collection  

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2008) T min = 0.966, T max = 0.991

  • 27256 measured reflections

  • 3556 independent reflections

  • 3014 reflections with I > 2σ(I)

  • R int = 0.020

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.044

  • wR(F 2) = 0.124

  • S = 1.06

  • 3556 reflections

  • 185 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.31 e Å−3

  • Δρmin = −0.19 e Å−3

Data collection: APEX2 (Bruker, 2010); cell refinement: SAINT (Bruker, 2010); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 2012) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812047836/bg2489sup1.cif

e-68-o3452-sup1.cif (22.2KB, cif)

Supplementary material file. DOI: 10.1107/S1600536812047836/bg2489Isup2.cdx

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812047836/bg2489Isup3.hkl

e-68-o3452-Isup3.hkl (174.4KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812047836/bg2489Isup4.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1⋯O1i 0.834 (17) 2.128 (17) 2.9481 (13) 167.9 (15)
N3—H3A⋯O2ii 0.886 (18) 2.071 (18) 2.9451 (14) 168.9 (15)
N3—H3B⋯O2iii 0.890 (17) 2.034 (17) 2.8875 (13) 160.3 (15)
C3—H3C⋯O1i 0.99 2.41 3.2987 (17) 149

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

AMI is thankful to the Department of Atomic Energy, Board for Research in Nuclear Sciences, Government of India, for a Young scientist award. JMR thanks the Principal of GMIT Davavangere for providing research facilities.

supplementary crystallographic information

Comment

Piperidine and its derivatives are ubiquitous building blocks in the synthesis of pharmaceuticals and fine chemicals (Chen et al., 2012; Boja et al., 2011, Jakubowska et al., 2012). Members of this family have found a wide range of applications in pharmacology and are used as antidepressants (e.g. Paroxetine) and analgesics (e.g. meperidine hydrochloride) or to control attention-deficit hyperactivity disorder (e.g. Methylphenidate). In view of the biological importance, the title compound was synthesized to study its crystal structure.

According to a puckering analysis (Cremer & Pople, 1975; Boeyens, 1978), the piperidine ring adopts a 1C4 conformation with the the nitrogen atom as well as the carbon atom in para position to it acting as the flap atoms (N2CC5). The primary amide group occupies an equatorial position. Due to amide-type resonance, the intracyclic nitrogen atom is present in an almost planar environment, the least-squares plane defined by the urea moiety (N2–C2–O1–N1) featuring the carbon atom as the one atom deviating most from this plane by 0.010 (1) Å (r.m.s. of all fitted atoms = 0.0057 Å). The least-squares planes through the atoms of the heterocycle and the phenyl groups define an angle of 48.15 (7) °. The planes defined by the non-hydrogen atoms of the amide groups intersect the least-squares plane defined by the intracyclic atoms of the heterocycle at angles of 29.22 (15) ° and 71.8 (2) ° with the smaller angle found for the secondary amide group (Fig. 1).

In the crystal, non-classical C–H..O bonds as well as classical hydrogen bonds of the N–H···O type coexist. The former ones take part between one of the intracyclic methylene groups directly bonded to the nitrogen atom of the piperidine moiety and the oxygen atom of the secondary amide group (which also acts as acceptor for one set of N–H···O hydrogen bonds). The hydrogen atoms of the primary amide group, in turn, link the oxygen atom of its own functional group in neighbouring molecules as acceptor. Metrical parameters as well as information about the symmetry of these contacts are summarized in Table 1. In total, these contacts connect the molecules to a three-dimensional network. According to a graph-set analysis (Etter et al., 1990; Bernstein et al., 1995), the descriptor for the C–H···O contacts is C11(5) on the unitary level while the descriptor found for the hydrogen bonds fostered by the secondary amide group necessitates a C11(4) on the same level. The description of the hydrogen bonding pattern created by the primary amide group is best achieved by a binary descriptor of R24(8). The shortest intercentroid distance between two aromatic systems corersponds to a [100] translation (Fig. 2).

Experimental

Piperidine-4-carboxamide (10.0 g, 0.078 mol) was dissolved in THF (200 ml). To this triethylamine (23.27 g, 0.23 mol) was added, followed by 1-isocyanato-4-methylbenzene (11.31 g, 0.085 mol). The reaction mixture was stirred at room temperature for 12 h. Completion of the reaction was monitored by TLC. The precipitated solid was filtered, washed with THF and dried under vacuum to get the desired product. The resulting solid was recrystallized from ethanol, yield: 18.5 g (90.77%).

Refinement

Carbon-bound H atoms were placed in calculated positions (C–H 0.95 Å for aromatic carbon atoms, C–H 0.99 Å for methylene groups and C–H 1.00 Å for methine groups) and were included in the refinement in the riding model approximation, with U(H) set to 1.2Ueq(C). The H atoms of the methyl groups were allowed to rotate with a fixed angle around the C–C bond to best fit the experimental electron density (HFIX 137 in the SHELX program suite (Sheldrick, 2008)), with U(H) set to 1.5Ueq(C). All nitrogen-bound H atoms were located on a difference Fourier map and refined freely.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, with atom labels and anisotropic displacement ellipsoids (drawn at 50% probability level).

Fig. 2.

Fig. 2.

Intermolecular contacts, viewed along [-1 0 0]. For reasons of clarity, only a selection of contacts is shown. Blue dashed lines illustrate classical hydrogen bonds of the N–H···O type, green dashed lines depict C–H···O contacts. Symmetry operators: i -x + 1, -y, -z + 1; iix, -y + 1/2, z - 1/2.

Crystal data

C14H19N3O2 F(000) = 560
Mr = 261.32 Dx = 1.227 Mg m3
Monoclinic, P21/c Melting point = 523–521 K
Hall symbol: -P 2ybc Mo Kα radiation, λ = 0.71073 Å
a = 5.0102 (1) Å Cell parameters from 9992 reflections
b = 28.6642 (7) Å θ = 2.2–28.3°
c = 10.1131 (2) Å µ = 0.08 mm1
β = 103.113 (1)° T = 200 K
V = 1414.50 (5) Å3 Platelet, colourless
Z = 4 0.42 × 0.25 × 0.11 mm

Data collection

Bruker APEXII CCD diffractometer 3556 independent reflections
Radiation source: fine-focus sealed tube 3014 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.020
φ and ω scans θmax = 28.4°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2008) h = −6→6
Tmin = 0.966, Tmax = 0.991 k = −38→38
27256 measured reflections l = −13→13

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124 H atoms treated by a mixture of independent and constrained refinement
S = 1.06 w = 1/[σ2(Fo2) + (0.0614P)2 + 0.3543P] where P = (Fo2 + 2Fc2)/3
3556 reflections (Δ/σ)max < 0.001
185 parameters Δρmax = 0.31 e Å3
0 restraints Δρmin = −0.19 e Å3

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.1615 (2) 0.25725 (3) 0.13744 (9) 0.0434 (2)
O2 0.31030 (17) 0.05523 (3) 0.44661 (12) 0.0459 (3)
N1 0.1515 (2) 0.27199 (3) 0.35689 (10) 0.0330 (2)
H1 0.155 (3) 0.2596 (5) 0.4318 (17) 0.042 (4)*
N2 0.3917 (3) 0.20893 (4) 0.30192 (10) 0.0394 (3)
N3 0.7377 (2) 0.03696 (4) 0.43233 (13) 0.0386 (3)
H3A 0.710 (3) 0.0081 (6) 0.4578 (17) 0.049 (4)*
H3B 0.898 (3) 0.0466 (6) 0.4190 (16) 0.045 (4)*
C1 −0.2229 (5) 0.46134 (6) 0.3273 (2) 0.0767 (6)
H1A −0.0793 0.4818 0.3082 0.115*
H1B −0.2613 0.4698 0.4150 0.115*
H1C −0.3898 0.4649 0.2556 0.115*
C2 0.2337 (3) 0.24678 (4) 0.25859 (11) 0.0310 (2)
C3 0.5469 (3) 0.20076 (4) 0.44066 (12) 0.0368 (3)
H3C 0.4867 0.2229 0.5031 0.044*
H3D 0.7444 0.2060 0.4461 0.044*
C4 0.5025 (2) 0.15119 (4) 0.48297 (12) 0.0321 (2)
H4A 0.3070 0.1467 0.4839 0.039*
H4B 0.6129 0.1456 0.5760 0.039*
C5 0.5848 (2) 0.11644 (4) 0.38535 (12) 0.0301 (2)
H5 0.7851 0.1202 0.3899 0.036*
C6 0.4276 (3) 0.12705 (4) 0.24063 (13) 0.0409 (3)
H6A 0.4911 0.1060 0.1765 0.049*
H6B 0.2297 0.1213 0.2327 0.049*
C7 0.4714 (4) 0.17763 (4) 0.20382 (14) 0.0472 (4)
H7A 0.6666 0.1827 0.2034 0.057*
H7B 0.3604 0.1845 0.1117 0.057*
C8 0.5337 (2) 0.06691 (4) 0.42456 (12) 0.0305 (2)
C11 0.0476 (2) 0.31796 (4) 0.34039 (11) 0.0302 (2)
C12 −0.1339 (3) 0.33220 (5) 0.41605 (15) 0.0455 (3)
H12 −0.2011 0.3104 0.4713 0.055*
C13 −0.2187 (4) 0.37835 (6) 0.41185 (17) 0.0544 (4)
H13 −0.3429 0.3877 0.4653 0.065*
C14 −0.1276 (3) 0.41117 (5) 0.33202 (15) 0.0482 (3)
C15 0.0491 (3) 0.39607 (5) 0.25471 (15) 0.0452 (3)
H15 0.1115 0.4177 0.1972 0.054*
C16 0.1383 (3) 0.35025 (4) 0.25839 (13) 0.0383 (3)
H16 0.2618 0.3409 0.2046 0.046*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0715 (7) 0.0391 (5) 0.0191 (4) 0.0123 (4) 0.0091 (4) 0.0027 (3)
O2 0.0244 (4) 0.0361 (5) 0.0818 (7) 0.0014 (3) 0.0219 (4) 0.0156 (4)
N1 0.0484 (6) 0.0318 (5) 0.0201 (5) 0.0058 (4) 0.0106 (4) 0.0038 (4)
N2 0.0650 (7) 0.0307 (5) 0.0221 (5) 0.0115 (5) 0.0094 (5) 0.0012 (4)
N3 0.0236 (5) 0.0294 (5) 0.0654 (8) 0.0017 (4) 0.0159 (5) 0.0104 (5)
C1 0.1017 (15) 0.0434 (9) 0.0764 (13) 0.0245 (9) 0.0024 (11) −0.0068 (8)
C2 0.0435 (6) 0.0291 (5) 0.0209 (5) −0.0002 (4) 0.0083 (4) 0.0012 (4)
C3 0.0458 (7) 0.0307 (6) 0.0301 (6) 0.0028 (5) 0.0011 (5) 0.0018 (4)
C4 0.0347 (6) 0.0338 (6) 0.0265 (6) 0.0043 (4) 0.0042 (4) 0.0054 (4)
C5 0.0241 (5) 0.0282 (5) 0.0410 (6) 0.0009 (4) 0.0135 (4) 0.0063 (4)
C6 0.0620 (8) 0.0311 (6) 0.0324 (6) 0.0079 (5) 0.0162 (6) −0.0017 (5)
C7 0.0824 (10) 0.0338 (6) 0.0312 (6) 0.0140 (6) 0.0253 (7) 0.0051 (5)
C8 0.0223 (5) 0.0293 (5) 0.0412 (6) −0.0004 (4) 0.0096 (4) 0.0059 (4)
C11 0.0347 (5) 0.0326 (5) 0.0219 (5) 0.0022 (4) 0.0033 (4) −0.0010 (4)
C12 0.0540 (8) 0.0451 (7) 0.0429 (7) 0.0076 (6) 0.0224 (6) 0.0027 (6)
C13 0.0629 (9) 0.0538 (9) 0.0502 (9) 0.0195 (7) 0.0205 (7) −0.0047 (7)
C14 0.0566 (8) 0.0371 (7) 0.0438 (8) 0.0100 (6) −0.0032 (6) −0.0054 (6)
C15 0.0570 (8) 0.0345 (6) 0.0403 (7) −0.0013 (6) 0.0035 (6) 0.0052 (5)
C16 0.0460 (7) 0.0368 (6) 0.0330 (6) 0.0014 (5) 0.0113 (5) 0.0029 (5)

Geometric parameters (Å, º)

O1—C2 1.2333 (14) C4—H4B 0.9900
O2—C8 1.2360 (13) C5—C8 1.5114 (15)
N1—C2 1.3659 (15) C5—C6 1.5270 (17)
N1—C11 1.4127 (15) C5—H5 1.0000
N1—H1 0.834 (17) C6—C7 1.5249 (18)
N2—C2 1.3560 (15) C6—H6A 0.9900
N2—C7 1.4588 (16) C6—H6B 0.9900
N2—C3 1.4605 (15) C7—H7A 0.9900
N3—C8 1.3235 (14) C7—H7B 0.9900
N3—H3A 0.886 (18) C11—C12 1.3763 (17)
N3—H3B 0.890 (17) C11—C16 1.3863 (17)
C1—C14 1.513 (2) C12—C13 1.387 (2)
C1—H1A 0.9800 C12—H12 0.9500
C1—H1B 0.9800 C13—C14 1.383 (2)
C1—H1C 0.9800 C13—H13 0.9500
C3—C4 1.5151 (16) C14—C15 1.377 (2)
C3—H3C 0.9900 C15—C16 1.3852 (18)
C3—H3D 0.9900 C15—H15 0.9500
C4—C5 1.5238 (16) C16—H16 0.9500
C4—H4A 0.9900
C2—N1—C11 124.85 (10) C6—C5—H5 108.5
C2—N1—H1 119.3 (11) C7—C6—C5 110.61 (11)
C11—N1—H1 115.8 (11) C7—C6—H6A 109.5
C2—N2—C7 120.14 (10) C5—C6—H6A 109.5
C2—N2—C3 125.68 (10) C7—C6—H6B 109.5
C7—N2—C3 112.74 (10) C5—C6—H6B 109.5
C8—N3—H3A 117.0 (11) H6A—C6—H6B 108.1
C8—N3—H3B 120.2 (10) N2—C7—C6 110.00 (10)
H3A—N3—H3B 122.7 (15) N2—C7—H7A 109.7
C14—C1—H1A 109.5 C6—C7—H7A 109.7
C14—C1—H1B 109.5 N2—C7—H7B 109.7
H1A—C1—H1B 109.5 C6—C7—H7B 109.7
C14—C1—H1C 109.5 H7A—C7—H7B 108.2
H1A—C1—H1C 109.5 O2—C8—N3 122.17 (11)
H1B—C1—H1C 109.5 O2—C8—C5 121.06 (10)
O1—C2—N2 122.28 (11) N3—C8—C5 116.76 (10)
O1—C2—N1 121.69 (11) C12—C11—C16 118.82 (11)
N2—C2—N1 116.01 (10) C12—C11—N1 118.89 (11)
N2—C3—C4 109.95 (10) C16—C11—N1 122.10 (11)
N2—C3—H3C 109.7 C11—C12—C13 120.15 (13)
C4—C3—H3C 109.7 C11—C12—H12 119.9
N2—C3—H3D 109.7 C13—C12—H12 119.9
C4—C3—H3D 109.7 C14—C13—C12 121.80 (14)
H3C—C3—H3D 108.2 C14—C13—H13 119.1
C3—C4—C5 110.57 (10) C12—C13—H13 119.1
C3—C4—H4A 109.5 C15—C14—C13 117.23 (13)
C5—C4—H4A 109.5 C15—C14—C1 121.33 (16)
C3—C4—H4B 109.5 C13—C14—C1 121.42 (16)
C5—C4—H4B 109.5 C14—C15—C16 121.86 (13)
H4A—C4—H4B 108.1 C14—C15—H15 119.1
C8—C5—C4 110.93 (9) C16—C15—H15 119.1
C8—C5—C6 110.94 (10) C15—C16—C11 120.11 (12)
C4—C5—C6 109.52 (9) C15—C16—H16 119.9
C8—C5—H5 108.5 C11—C16—H16 119.9
C4—C5—H5 108.5
C7—N2—C2—O1 −3.0 (2) C4—C5—C8—O2 50.08 (16)
C3—N2—C2—O1 162.27 (13) C6—C5—C8—O2 −71.88 (15)
C7—N2—C2—N1 175.02 (12) C4—C5—C8—N3 −130.68 (12)
C3—N2—C2—N1 −19.70 (19) C6—C5—C8—N3 107.35 (13)
C11—N1—C2—O1 −18.65 (19) C2—N1—C11—C12 151.54 (13)
C11—N1—C2—N2 163.31 (11) C2—N1—C11—C16 −33.52 (18)
C2—N2—C3—C4 134.00 (13) C16—C11—C12—C13 −1.4 (2)
C7—N2—C3—C4 −59.78 (15) N1—C11—C12—C13 173.76 (13)
N2—C3—C4—C5 57.39 (13) C11—C12—C13—C14 0.5 (2)
C3—C4—C5—C8 −178.42 (9) C12—C13—C14—C15 0.9 (2)
C3—C4—C5—C6 −55.63 (13) C12—C13—C14—C1 179.54 (16)
C8—C5—C6—C7 177.79 (10) C13—C14—C15—C16 −1.5 (2)
C4—C5—C6—C7 55.01 (13) C1—C14—C15—C16 179.85 (15)
C2—N2—C7—C6 −133.78 (13) C14—C15—C16—C11 0.7 (2)
C3—N2—C7—C6 59.15 (16) C12—C11—C16—C15 0.76 (19)
C5—C6—C7—N2 −56.27 (16) N1—C11—C16—C15 −174.18 (12)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N1—H1···O1i 0.834 (17) 2.128 (17) 2.9481 (13) 167.9 (15)
N3—H3A···O2ii 0.886 (18) 2.071 (18) 2.9451 (14) 168.9 (15)
N3—H3B···O2iii 0.890 (17) 2.034 (17) 2.8875 (13) 160.3 (15)
C3—H3C···O1i 0.99 2.41 3.2987 (17) 149

Symmetry codes: (i) x, −y+1/2, z+1/2; (ii) −x+1, −y, −z+1; (iii) x+1, y, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BG2489).

References

  1. Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573.
  2. Boeyens, J. C. A. (1978). J. Cryst. Mol. Struct. 8, 317–320.
  3. Boja, P., Won, S., Suh, D. H., Chu, J., Park, W. K. & Lim, H. (2011). Bull. Korean Chem. Soc. 32, 1249–1252.
  4. Bruker (2008). SADABS Bruker Inc., Madison, Wisconsin, USA.
  5. Bruker (2010). APEX2 and SAINT Bruker AXS Inc., Madison, USA.
  6. Chen, X., Zhan, P., Pannecouque, C., Balzarini, J., Clercq, E. D. & Liu, X. (2012). Eur. J. Med. Chem. 51, 60–66. [DOI] [PubMed]
  7. Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354–1358.
  8. Etter, M. C., MacDonald, J. C. & Bernstein, J. (1990). Acta Cryst. B46, 256–262. [DOI] [PubMed]
  9. Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854.
  10. Jakubowska, A., Kulig, K., Guzior, N. & Malawska, B. (2012). Acta Pol. Pharm. Drug Res. 69, 449–455. [PubMed]
  11. Macrae, C. F., Bruno, I. J., Chisholm, J. A., Edgington, P. R., McCabe, P., Pidcock, E., Rodriguez-Monge, L., Taylor, R., van de Streek, J. & Wood, P. A. (2008). J. Appl. Cryst. 41, 466–470.
  12. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  13. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812047836/bg2489sup1.cif

e-68-o3452-sup1.cif (22.2KB, cif)

Supplementary material file. DOI: 10.1107/S1600536812047836/bg2489Isup2.cdx

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812047836/bg2489Isup3.hkl

e-68-o3452-Isup3.hkl (174.4KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812047836/bg2489Isup4.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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