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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Nov 30;68(Pt 12):o3495. doi: 10.1107/S1600536812048398

1,4-Dichloro-2,3-bis­(chloro­meth­yl)butane

David B Cordes a,, Kati M Aitken a, R Alan Aitken a,*
PMCID: PMC3589066  PMID: 23476302

Abstract

The title compound, C6H10Cl4, adopts a geometric arrangement with two C—Cl bonds anti­periplanar to C—H bonds and the other two anti­periplanar to C—C bonds. While minimising steric replusion, this arrangement still gives rise to some intramolecular C—H⋯Cl contacts. In the crystal, mol­ecules are connected into a three-dimensional architecture via further C—H⋯Cl contacts.

Related literature  

The title compound was previously prepared by Weinges & Spänig (1968). For related structures of polychlorinated acylic alkanes, see: Frenzen et al. (1999); Frenzen & Coelhan (1998); Bart et al. (1979, 1980); Karapetyan et al. (2008); Kabalka et al. (2005); Podsiadło & Katrusiak (2006); Klaeboe et al. (1986).graphic file with name e-68-o3495-scheme1.jpg

Experimental  

Crystal data  

  • C6H10Cl4

  • M r = 223.94

  • Orthorhombic, Inline graphic

  • a = 8.998 (3) Å

  • b = 8.400 (3) Å

  • c = 24.643 (7) Å

  • V = 1862.6 (10) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 1.20 mm−1

  • T = 93 K

  • 0.25 × 0.25 × 0.10 mm

Data collection  

  • Rigaku Mercury diffractometer

  • Absorption correction: multi-scan (CrystalClear; Rigaku, 2010) T min = 0.746, T max = 1.000

  • 8405 measured reflections

  • 1658 independent reflections

  • 1553 reflections with I > 2σ(I)

  • R int = 0.050

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.030

  • wR(F 2) = 0.075

  • S = 1.12

  • 1658 reflections

  • 91 parameters

  • H-atom parameters constrained

  • Δρmax = 0.29 e Å−3

  • Δρmin = −0.26 e Å−3

Data collection: CrystalClear (Rigaku, 2010); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SIR2004 (Burla et al., 2005); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812048398/tk5174sup1.cif

e-68-o3495-sup1.cif (17.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812048398/tk5174Isup2.hkl

e-68-o3495-Isup2.hkl (81.8KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812048398/tk5174Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C1—H1B⋯Cl3 0.99 2.76 3.2097 (19) 108
C4—H4B⋯Cl4 0.99 2.80 3.2445 (19) 108
C5—H5B⋯Cl1 0.99 2.74 3.2069 (19) 109
C6—H6B⋯Cl2 0.99 2.72 3.1940 (18) 110
C2—H2⋯Cl3i 1.00 2.93 3.8599 (19) 155
C3—H3⋯Cl2ii 1.00 2.86 3.8092 (19) 160
C4—H4B⋯Cl3i 0.99 2.92 3.657 (2) 132
C5—H5A⋯Cl2iii 0.99 2.90 3.6951 (19) 138
C6—H6A⋯Cl1iv 0.99 2.84 3.655 (2) 140

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic.

Acknowledgments

The authors are grateful to the University of St Andrews and the Engineering and Physical Sciences Research Council (EPSRC, UK) for financial support.

supplementary crystallographic information

Comment

The title compound shows a mixture of geometric arrangements of the C—Cl bonds, with two of them antiperiplanar to C—C bonds [Cl3—C5—C2—C3: 166.68 (11)°, Cl2—C4—C3—C2: 166.96 (11)°], and the other two antiperiplanar to C—H bonds [Cl1—C1—C2—H2: 178.6°, Cl4—C6—C3—H3: 175.9°]. This pattern of differing geometric arrangements has also been seen in related polychlorinated acylic alkanes (Frenzen et al., 1999; Frenzen & Coelhan, 1998; Bart et al., 1979, 1980; Karapetyan et al., 2008; Kabalka et al., 2005; Podsiadło & Katrusiak, 2006; Klaeboe et al., 1986), due to the necessity of minimizing steric repulsion in such extended structures. The arrangement of the C—Cl bonds gives rise to intramolecular C—H···Cl contacts for all four chlorines, at distances ranging from 2.72 to 2.80 Å. In addition, three of the four chlorine atoms also make intermolecular C—H···Cl contacts to adjacent molecules, at distances between 2.84 and 2.93 Å, resulting in the formation of a weakly interacting three-dimensional array.

Experimental

The title compound was prepared by the method of Weinges and Spänig (1968). Crystals suitable for X-ray structure determination were obtained by sublimation at room temperature and ambient pressure.

Refinement

Carbon-bound H atoms were included in calculated positions (C—H distances are 1.00 Å for methine H atoms and 0.99 Å for methylene H atoms) and refined as riding atoms with Uiso(H) = 1.2 Ueq(parent atom).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with displacement ellipsoids drawn at the 50% probability level.

Crystal data

C6H10Cl4 F(000) = 912
Mr = 223.94 Dx = 1.597 Mg m3
Orthorhombic, Pbca Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2ab Cell parameters from 5355 reflections
a = 8.998 (3) Å θ = 1.7–28.6°
b = 8.400 (3) Å µ = 1.20 mm1
c = 24.643 (7) Å T = 93 K
V = 1862.6 (10) Å3 Prism, colourless
Z = 8 0.25 × 0.25 × 0.10 mm

Data collection

Rigaku Mercury diffractometer 1658 independent reflections
Radiation source: rotating anode 1553 reflections with I > 2σ(I)
Confocal monochromator Rint = 0.050
Detector resolution: 14.7059 pixels mm-1 θmax = 25.4°, θmin = 2.8°
ω and φ scans h = −10→10
Absorption correction: multi-scan (CrystalClear; Rigaku, 2010) k = −9→10
Tmin = 0.746, Tmax = 1.000 l = −25→29
8405 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.075 H-atom parameters constrained
S = 1.12 w = 1/[σ2(Fo2) + (0.0315P)2 + 0.758P] where P = (Fo2 + 2Fc2)/3
1658 reflections (Δ/σ)max < 0.001
91 parameters Δρmax = 0.29 e Å3
0 restraints Δρmin = −0.26 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl1 −0.07005 (5) −0.12175 (5) 0.063173 (16) 0.02498 (15)
Cl2 0.32971 (5) 0.25183 (6) 0.190640 (17) 0.02602 (15)
Cl3 −0.33730 (5) 0.06538 (6) 0.184618 (18) 0.02712 (15)
Cl4 0.08315 (5) 0.40738 (5) 0.056565 (18) 0.02950 (15)
C1 −0.1427 (2) 0.0759 (2) 0.07550 (7) 0.0210 (4)
H1A −0.1140 0.1468 0.0452 0.025*
H1B −0.2526 0.0714 0.0768 0.025*
C2 −0.08431 (17) 0.14452 (19) 0.12866 (6) 0.0177 (4)
H2 −0.1265 0.2541 0.1324 0.021*
C3 0.08737 (17) 0.16035 (19) 0.13078 (6) 0.0174 (4)
H3 0.1284 0.0520 0.1383 0.021*
C4 0.13327 (19) 0.2676 (2) 0.17793 (6) 0.0215 (4)
H4A 0.0777 0.2367 0.2110 0.026*
H4B 0.1079 0.3795 0.1693 0.026*
C5 −0.13917 (19) 0.0475 (2) 0.17705 (7) 0.0216 (4)
H5A −0.0896 0.0855 0.2105 0.026*
H5B −0.1126 −0.0658 0.1718 0.026*
C6 0.15708 (18) 0.2177 (2) 0.07798 (7) 0.0207 (4)
H6A 0.1388 0.1378 0.0492 0.025*
H6B 0.2659 0.2273 0.0829 0.025*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl1 0.0309 (3) 0.0212 (3) 0.0228 (2) −0.00077 (18) 0.00016 (16) −0.00473 (16)
Cl2 0.0180 (3) 0.0320 (3) 0.0281 (3) −0.00443 (16) −0.00639 (15) 0.00751 (18)
Cl3 0.0168 (3) 0.0315 (3) 0.0331 (3) −0.00376 (17) 0.00498 (16) −0.00645 (18)
Cl4 0.0355 (3) 0.0231 (3) 0.0299 (3) −0.00145 (18) −0.00172 (17) 0.00903 (18)
C1 0.0210 (9) 0.0203 (8) 0.0215 (8) 0.0006 (7) −0.0031 (7) 0.0003 (7)
C2 0.0157 (9) 0.0173 (8) 0.0201 (8) 0.0012 (6) −0.0019 (6) −0.0006 (7)
C3 0.0167 (9) 0.0167 (8) 0.0188 (8) 0.0017 (6) −0.0003 (6) 0.0010 (6)
C4 0.0141 (8) 0.0286 (9) 0.0219 (8) −0.0014 (7) −0.0021 (6) −0.0004 (7)
C5 0.0157 (8) 0.0275 (9) 0.0217 (8) 0.0002 (7) 0.0012 (6) −0.0022 (7)
C6 0.0210 (10) 0.0196 (8) 0.0213 (8) 0.0012 (7) 0.0010 (6) 0.0013 (7)

Geometric parameters (Å, º)

Cl1—C1 1.8103 (18) C3—C6 1.523 (2)
Cl2—C4 1.7999 (18) C3—C4 1.528 (2)
Cl3—C5 1.7987 (18) C3—H3 1.0000
Cl4—C6 1.8054 (18) C4—H4A 0.9900
C1—C2 1.525 (2) C4—H4B 0.9900
C1—H1A 0.9900 C5—H5A 0.9900
C1—H1B 0.9900 C5—H5B 0.9900
C2—C5 1.526 (2) C6—H6A 0.9900
C2—C3 1.551 (2) C6—H6B 0.9900
C2—H2 1.0000
C2—C1—Cl1 111.49 (11) C3—C4—Cl2 110.75 (12)
C2—C1—H1A 109.3 C3—C4—H4A 109.5
Cl1—C1—H1A 109.3 Cl2—C4—H4A 109.5
C2—C1—H1B 109.3 C3—C4—H4B 109.5
Cl1—C1—H1B 109.3 Cl2—C4—H4B 109.5
H1A—C1—H1B 108.0 H4A—C4—H4B 108.1
C1—C2—C5 110.98 (14) C2—C5—Cl3 110.91 (12)
C1—C2—C3 113.87 (13) C2—C5—H5A 109.5
C5—C2—C3 109.97 (13) Cl3—C5—H5A 109.5
C1—C2—H2 107.2 C2—C5—H5B 109.5
C5—C2—H2 107.2 Cl3—C5—H5B 109.5
C3—C2—H2 107.2 H5A—C5—H5B 108.0
C6—C3—C4 110.60 (14) C3—C6—Cl4 112.17 (11)
C6—C3—C2 114.11 (13) C3—C6—H6A 109.2
C4—C3—C2 110.21 (13) Cl4—C6—H6A 109.2
C6—C3—H3 107.2 C3—C6—H6B 109.2
C4—C3—H3 107.2 Cl4—C6—H6B 109.2
C2—C3—H3 107.2 H6A—C6—H6B 107.9
Cl1—C1—C2—C5 −64.59 (16) C2—C3—C4—Cl2 166.96 (11)
Cl1—C1—C2—C3 60.14 (17) C1—C2—C5—Cl3 −66.41 (15)
C1—C2—C3—C6 40.2 (2) C3—C2—C5—Cl3 166.68 (11)
C5—C2—C3—C6 165.43 (14) C4—C3—C6—Cl4 −67.52 (15)
C1—C2—C3—C4 165.31 (13) C2—C3—C6—Cl4 57.41 (17)
C5—C2—C3—C4 −69.43 (18) Cl1—C1—C2—H2 178.6
C6—C3—C4—Cl2 −65.92 (15) Cl4—C6—C3—H3 175.9

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
C1—H1B···Cl3 0.99 2.76 3.2097 (19) 108
C4—H4B···Cl4 0.99 2.80 3.2445 (19) 108
C5—H5B···Cl1 0.99 2.74 3.2069 (19) 109
C6—H6B···Cl2 0.99 2.72 3.1940 (18) 110
C2—H2···Cl3i 1.00 2.93 3.8599 (19) 155
C3—H3···Cl2ii 1.00 2.86 3.8092 (19) 160
C4—H4B···Cl3i 0.99 2.92 3.657 (2) 132
C5—H5A···Cl2iii 0.99 2.90 3.6951 (19) 138
C6—H6A···Cl1iv 0.99 2.84 3.655 (2) 140

Symmetry codes: (i) −x−1/2, y+1/2, z; (ii) −x+1/2, y−1/2, z; (iii) x−1/2, y, −z+1/2; (iv) −x, −y, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: TK5174).

References

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  2. Bart, J. C. J., Bassi, I. W. & Calcaterra, M. (1980). Acta Cryst. B36, 421–424.
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  13. Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812048398/tk5174sup1.cif

e-68-o3495-sup1.cif (17.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812048398/tk5174Isup2.hkl

e-68-o3495-Isup2.hkl (81.8KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812048398/tk5174Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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