Table 1. Features of the programs used in CASD-NMR2010.
Software | NOEs | Chemical shifts* |
Comments |
---|---|---|---|
CYANA | Y | s | Includes torsion angle restraints generated on the basis of the chemical shift values |
UNIO | Y | s | Includes torsion angle restraints generated on the basis of the chemical shift values |
ARIA | Y | s | Includes torsion angle restraints generated on the basis of the chemical shift values |
ASDP | Y | s | Includes torsion angle restraints generated on the basis of the chemical shift values; uses the DP-score measure (Huang et al., 2005) to re-rank the structural models |
Cheshire-Yapp | s | Y | Uses structural models initially generated using only CS data to assign NOEs, derive distance restraints and refine the best-scoring initial 100 models |
CS-DP-Rosetta | s | Y | Uses the unassigned NOESY peak lists and the DP-score measure (Huang et al., 2005) to re-rank the structural models |
Cheshire | Y | ||
CS-Rosetta | Y |
Used as direct structural restraints, rather than to derive secondary structure information or torsion angle restraints