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. Author manuscript; available in PMC: 2013 Mar 27.
Published in final edited form as: Structure. 2012 Feb 8;20(2):227–236. doi: 10.1016/j.str.2012.01.002

Table 1. Features of the programs used in CASD-NMR2010.

Y indicates this type of information is directly used in structure calculations, s indicates that it is used as a support to derive additional restraints and/or to improve scoring. Details are given in the Methods section.

Software NOEs Chemical
shifts*
Comments
CYANA Y s Includes torsion angle restraints generated on the basis of the chemical shift values
UNIO Y s Includes torsion angle restraints generated on the basis of the chemical shift values
ARIA Y s Includes torsion angle restraints generated on the basis of the chemical shift values
ASDP Y s Includes torsion angle restraints generated on the basis of the chemical shift values; uses the DP-score measure (Huang et al., 2005) to re-rank the structural models
Cheshire-Yapp s Y Uses structural models initially generated using only CS data to assign NOEs, derive distance restraints and refine the best-scoring initial 100 models
CS-DP-Rosetta s Y Uses the unassigned NOESY peak lists and the DP-score measure (Huang et al., 2005) to re-rank the structural models
Cheshire Y
CS-Rosetta Y
*

Used as direct structural restraints, rather than to derive secondary structure information or torsion angle restraints