Background: Neuronatin was identified as a novel substrate of Lafora disease ubiquitin ligase malin; however, its role in disease biology is unknown.
Results: Neuronatin causes increased intracellular Ca2+ and ER stress and accumulated as insoluble aggregates in LD brain and skin biopsy samples.
Conclusion: Neuronatin-induced aberrant Ca+2 signaling might trigger LD pathogenesis.
Significance: These findings provide a new insight in understanding pathogenesis of LD.
Keywords: Calcium Signaling, Endoplasmic Reticulum Stress, Glycogen Storage Disease, Neurodegenerative Diseases, Protein Aggregation
Abstract
Lafora disease (LD) is a teenage-onset inherited progressive myoclonus epilepsy characterized by the accumulations of intracellular inclusions called Lafora bodies and caused by mutations in protein phosphatase laforin or ubiquitin ligase malin. But how the loss of function of either laforin or malin causes disease pathogenesis is poorly understood. Recently, neuronatin was identified as a novel substrate of malin that regulates glycogen synthesis. Here we demonstrate that the level of neuronatin is significantly up-regulated in the skin biopsy sample of LD patients having mutations in both malin and laforin. Neuronatin is highly expressed in human fetal brain with gradual decrease in expression in developing and adult brain. However, in adult brain, neuronatin is predominantly expressed in parvalbumin-positive GABAergic interneurons and localized in their processes. The level of neuronatin is increased and accumulated as insoluble aggregates in the cortical area of LD brain biopsy samples, and there is also a dramatic loss of parvalbumin-positive GABAergic interneurons. Ectopic expression of neuronatin in cultured neuronal cells results in increased intracellular Ca2+, endoplasmic reticulum stress, proteasomal dysfunction, and cell death that can be partially rescued by malin. These findings suggest that the neuronatin-induced aberrant Ca2+ signaling and endoplasmic reticulum stress might underlie LD pathogenesis.
Introduction
Lafora disease (LD)4 is an autosomal recessive progressive myoclonus epilepsy, usually manifest during teenage, and the patient dies within a decade of disease onset. The disease is clinically characterized by progressive increase in generalized tonic-clonic seizures, myoclonic and visual seizures, dementia, psychoses, muscle wasting, leading the patient to a vegetative state and ultimately death (1–5). Pathological features of LD include gradual increase in accumulation of insoluble polyglucosan bodies (commonly known as Lafora bodies) and in neuronal loss. Lafora bodies are not only observed in brain but also in other non-neuronal tissues like liver, heart, skeletal muscle, and skin (1, 3, 6).
LD is caused by mutations in the EPM2A or EPM2B (NHLRC1) genes encoding laforin (a protein phosphatase) and malin (a E3 ubiquitin ligase), respectively (2, 7–9). Patients with mutations in either laforin or malin are clinically and pathologically indistinguishable (2, 10), indicating that both of these proteins work together in some common signaling pathways, and defect in those pathways could lead to disease manifestation. Emerging evidence indicates that both laforin and malin could play an important role in regulation of glycogen metabolism (11–15), in autophagy (16–18), and in Wnt signaling pathway (19, 20). Knock-out mice for both laforin and malin also exhibits progressive accumulation of Lafora bodies in various tissues including brain, defects in autophagic degradation pathway, and widespread neurodegeneration (17, 18, 21–24). Current finding in LD mice models point toward the role of abnormal accumulation of Lafora bodies (18, 23, 25) and impairment of intracellular protein degradation pathways (17, 18, 26) in the disease pathogenesis. Lafora bodies in the brain are also associated with a number of cellular factors including the components of ubiquitin-proteasome system (UPS) and autophagy, indicating further the involvement of these protein degradation pathways in disease progression (17, 26). But how exactly Lafora bodies induce neurodegeneration is not clear at present, and the possible mechanism of dysfunction of protein degradation pathways in LD is also poorly understood.
Neuronatin, a small proteolipid family membrane protein, is highly expressed in embryonic brain and suggested to be involved in brain development (27, 28). It exists in two major isoforms, α and β, consisting of 81 and 54 amino acids, respectively (29, 30). In adult mice brain, it is expressed at very low levels and largely restricted to limbic structures (31). Neuronatin is also expressed in several other peripheral tissues including pancreas, adipose tissues, and skin (32–34). Although the physiological function of neuronatin is poorly understood, existing literature indicates its involvement in glucose-mediated insulin secretion from pancreas, in adipogenesis, and in metabolic regulation (31, 32, 35–37). Interestingly, neuronatin has significant homology with phospholamban and PMP1 that function as regulatory subunit of ion channel and shown to promote neural lineage in embryonic stem cells through increasing the intracellular Ca2+ by antagonizing serco/endoplasmic reticulum Ca2+-ATPase-2 (SERCA2) (27, 38). Recently, we have reported that malin interacts with neuronatin and promotes its proteasome-mediated degradation. Malin also negatively regulates neuronatin-stimulated glycogen synthesis (39). Here, we demonstrate that neuronatin level is increased in LD skin biopsy samples irrespective of mutation in either malin or laforin and accumulated as insoluble aggregates in LD brain biopsy samples. We also provide evidence that neuronatin-mediated aberrant Ca2+ signaling might be an important early event leading to neurodegeneration in LD by inducing endoplasmic reticulum (ER) and proteasomal stress.
EXPERIMENTAL PROCEDURES
Materials
Cell culture media, MG132, dbcAMP, thapsigargin, tunicamycin, and mouse monoclonal calbindin antibody were purchased from Sigma. Lipofectamine 2000, OptiMEM, Fura-2/AM, and mouse monoclonal V5 antibody were purchased from Invitrogen. Fetal bovine serum and antibiotics penicillin/streptomycin were obtained from GIBCO, and Bradford reagent and prestained protein molecular mass markers were from Bio-Rad. Mouse monoclonal anti-myc, anti-GAPDH, anti-CHOP, rabbit polyclonal anti-IRE-α, anti-β-tubulin, and goat polyclonal anti-Hsc70/Hsp70 and anti-Grp78 were purchased from Santa Cruz Biotechnology. Rabbit polyclonal anti-ubiquitin, mouse monoclonal anti-GFP, and rabbit polyclonal anti-neuronatin were purchased from Dako, Roche Applied Science, and Abcam, respectively. Rabbit polyclonal parvalbumin antibody was obtained from Swant. HRP- and fluorophore-conjugated secondary antibodies, Novared kit, and Vectashield mounting media with 4′6′-diamidino-2-phenylindole (DAPI) were purchased from Vector Laboratories. The construction of malin-V5, neuronatin β-myc plasmid, and the source of pd1EGFP and C26S malin plasmids were described elsewhere (39–41). Mouse-specific neuronatin siRNA (a pool of three target-specific 20–25 nucleotide) and control (scramble sequences) were purchased from Santa Cruz Biotechnology.
The serial paraffin sections of axillary skin and brain biopsy samples, paraffin section of control brain with different ages (39 weeks, 11, 15, and 50 years) were obtained from the archives of Human Brain Tissue Repository, National Institute of Mental Health and Neurosciences, Bangalore, India, according to the ethical guidelines of Indian Council of Medical Research, with the consent of the subject to utilize the material for research purposes, protecting the confidentiality of the subject. We used three clinically and genetically confirmed LD (malin mutants; L279P and delF216-D233 and laforin mutant; N148Y) and three normal skin biopsy samples (samples serial numbers 1718, 1762, and 1848) in this study. Two clinically confirmed cases of LD brain biopsy samples (LD1, 623; LD2, 544) were used in our study. LD1 and LD2 patients were of 17 and 23 years old, respectively.
Cell Culture, Transfection, and Immunoblotting
Neuro 2a cells were routinely cultured in DMEM with 10% fetal bovine serum and antibiotics penicillin/streptomycin. Cells were plated at subconfluent density into 6-well tissue cultured plates and transfected after 24 h with Lipofectamine 2000 according to the manufacturer's instruction. Transfection efficiency was ∼50–60%. After 36 or 48 h of transfection, cells were collected, washed twice in ice-cold phosphate-buffered saline (PBS), pelleted by centrifugation, and lysed under ice for 30 min using Nonidet P-40 lysis buffer (50 mm Tris, pH 8.0, 150 mm NaCl, 1% Nonidet P-40, complete EDTA-free protease inhibitor mixture). Cell lysates were collected after brief sonication and centrifugation at 20,000 × g for 15 min. Protein concentrations were measured using the Bradford method. Total cell lysates were resolved through SDS-polyacrylamide gel electrophoresis and processed for immunoblotting as described elsewhere (42). Neuronatin and V5 antibody were used at 1:5000 dilution; myc, IRE-α, Grp78, CHOP, ubiquitin, and β-tubulin antibody at 1:1000 dilution; GAPDH at 1:15,000 dilution.
Immunofluorescence Staining and Counting of Apoptotic Cells
Neuro 2a cells grown in 2-well tissue cultured chamber slides were transiently transfected with various plasmids, differentiated with dbcAMP, and 72 h after transfection, cells were processed for immunofluorescence staining. In some experiment cells were treated with MG132 and subjected to immunofluorescence staining. Briefly, cells were washed with PBS three times, fixed with 4% paraformaldehyde in PBS for 30 min. After fixation, cell were washed three times again with PBS and permeabilized with 0.3% TritonX-100 in PBS for 10 min and subsequently blocked with 3% BSA in PBS for 1 h. Cells were incubated with various primary antibodies overnight at 4 °C. After three washings with PBS, cells were incubated with fluorophore-conjugated secondary antibody for 1 h. Cells were finally washed with PBS and mounted in medium containing DAPI and imaged using Axioplan fluorescence microscope/Apotome (Zeiss). Anti-myc, anti-neuronatin, and anti-V5 were used at 1:1000 dilution.
Transfected cells exhibiting apoptotic bodies (fragmented nuclei) were manually counted at a magnification of ×20. Fields were randomly selected, and ∼200 cells were scored per experiment. Each experiment was repeated at least three times, and counts were performed in a blinded manner.
Measurement of Intracellular Ca2+ Level
Neuro 2a cells were plated into 6-well tissue culture plates and transfected with various plasmids and neuronatin siRNA. Thapsigargin (1 μm) was added in one of the wells for 12 h to serve as the positive control. Thirty-six hours after transfection, cells were washed with PBS and loaded with 5 μm Fura-2/AM for 30 min. Cells were then washed and treated with 1× Hanks' balanced salt solution for 45 min, washed, collected, and transferred to a 96-well black bottom plate, and the fluorescence was measured using a fluorescence plate reader having an excitation filter of 340 and 380 nm and an emission filter of 510 nm. The raw data were obtained, and the intracellular calcium concentration was calculated from the ratio of fluorescence emissions at excitation wavelengths of 340 and 380 nm (F340/F380) according to the equation described earlier (43).
Immunohistochemical Techniques and Periodic Acid Schiff (PAS) Staining
The paraffin-embedded axillary skin and brain sections were deparaffinized with xylene, rehydrated with a gradually decreasing percentage of alcohol, and subjected to antigen retrieval in a pressure cooker. The sections were treated with 3% H2O2 in methanol, permeabilized in 0.3% Triton X-100, and blocked with 5% goat serum containing 0.1% Triton X-100. The sections were incubated with primary antibodies to neuronatin (1:1000 dilution), ubiquitin (1:200 dilution), and Hsc70/Hsp70 (1:250 dilution), respectively, overnight. Color development was carried out using the Nova red kit. One section from each case was subjected to PAS staining to confirm the presence of Lafora bodies according to previously described method (44). In some experiment, control human brain section was subjected to double immunofluorescence staining using either parvalbumin and neuronatin antibodies or neuronatin and calbindin antibodies.
Proteasome Activity Assays
Neuro 2a cells were seeded onto 6-well tissue-cultured plates and after overnight of platting cells were transfected with various plasmids and treated with dbcAMP. Collected cells were processed for proteasome activity assays as previously described (41). The substrates Suc-Leu-Leu-Val-Tyr-MCA (methyl cumaryl amide) and Z-Leu-Leu-Glu-MCA were used to measure the chymotrypsin-like and post-glutamyl peptidyl hydrolytic-like protease activity, respectively.
Statistical Analysis
Data were analyzed by one-way analysis of variance using SigmaStat software. Values are presented as mean ± S.D. The Bonferroni post hoc test was conducted to compare individual means where analysis of variance indicated statistical differences. p < 0.05 was considered statistically significant.
RESULTS
Skin Biopsy Samples of LD Patients Having Mutations in Either Laforin or Malin Exhibit Increased Level of Neuronatin
We have recently identified neuronatin as a novel interacting partner of malin. Malin induces ubiquitination and proteasome-mediated degradation of neuronatin (39). We further explored the significance of interaction of malin with neuronatin in the context of LD pathogenesis. First, we studied and compared the level of neuronatin in skin biopsy sample of LD patients along with age-matched control subjects. It is important to note that the Lafora bodies are frequently observed in the apocrine sweat gland of skin (34), and skin biopsies are routinely carried out to diagnose LD (1). Because neuronatin is abundantly expressed in sweat gland of human skin, we took advantage of easily accessible LD skin biopsy samples to study the level of neuronatin. In control subjects, neuronatin was expressed in myoepithelial cells of the sweat glands and localized mostly in the membrane with diffuse cytoplasmic staining pattern. However, in the malin mutants LD skin biopsy sample, neuronatin staining was strongly increased not only in the membrane and cytoplasm but also in the nucleus of the myoepithelial cells of sweat gland (Fig. 1). A similar increase and redistribution of neuronatin into nucleus were also detected in the LD skin biopsy samples having laforin mutation. These finding suggests that functional laforin-malin complex might be essential in the regulation of neuronatin level.
Age-dependent Expression and Localization of Neuronatin in Human Brain
Our next goal was to characterize the expression of neuronatin in the LD brain and its involvement in LD pathogenesis. Neuronatin expression is developmentally regulated in rodent brain. However, its expression pattern and localization in human brain are not well known. Therefore, we next attempted to study the expression and localization of neuronatin in human brain of different ages. Fig. 2A shows that the expression of neuronatin is very high in the cortical neurons of 39-week-old brain. However, its expression was drastically reduced in the cortical neurons of 15- and 50-year-old brain. Immunoblot analysis of neuronatin also confirmed similar findings (Fig. 2B). Interestingly, a selective population of neurons in 15- and 50-year-old brain expressed high level of neuronatin and was localized not only in the cell soma but also in the neuronal processes. Further search revealed that the parvalbumin-positive (PV+ve) GABAergic interneurons selectively expressed high level of neuronatin in the brains of 15- and 50-year-old individuals (Fig. 2C), whereas neuronatin was not expressed in calbindin-positive GABAergic neurons. Extensive studies in adult mouse brain also showed high levels of expression of neuronatin in PV+ve GABAergic interneurons in the cortex, hippocampus, amygdala, and hypothalamus.
LD Brain Exhibits Increased Accumulation of Neuronatin and Loss of PV+ve GABAergic Interneurons
The symptoms of LD usually appear early in adolescence. Because neuronatin is widely expressed in developing brain including a subpopulation of GABAergic neurons, we further explored its level and localization in cortical areas of LD brain. To our surprise, we noticed frequent accumulation of neuronatin as insoluble aggregates in cortical areas (Fig. 3). Some neurons and their processes also showed a very high level of accumulation of neuronatin compared with age-matched control brain. Ubiquitin immunostaining also revealed accumulation of insoluble inclusions in the LD brain. Ubiquitin and neuronatin-positive Lafora bodies were strikingly similar in their appearance. Most Lafora bodies were strongly labeled with ubiquitin (Fig. 4). In addition, ubiquitin-positive multiple inclusions were also sometimes observed around the perinuclear region (Fig. 4). Because neuronatin is expressed in PV+ve GABAergic neurons, we were curious to know the status of these interneurons in LD brain biopsy samples. Immunohistochemical staining revealed approximately 75–85% reduction in the numbers of the PV+ve GABAergic neuron in the cortical areas of both the LD brain biopsy samples (Fig. 5). Existing PV+ve GABAergic neurons in LD brain biopsy samples also showed degeneration in their processes (Fig. 5).
Neuronatin Is Accumulated in Perinuclear Region in Response to Proteasomal Inhibition, and Its Overexpression Causes Increased Intracellular Ca2+ and Apoptosis, Which Are Partially Restored by Malin
Because neuronatin is accumulated and forms inclusions in LD brain, we next explored its possible role in neurodegeneration using cultured neuronal cells. Neuronatin was expressed in Neuro 2a cells and localized in the membrane and cytosol. Treatment with a proteasome inhibitor caused its accumulation in perinuclear region in the cell indicating that it is rapidly degraded via UPS (Fig. 6A). Immnoblot analysis also confirmed the increased level of neuronatin in proteasome inhibitor-treated cells. Neuronatin was also accumulated in insoluble fraction (Fig. 6A). The half-life of neuronatin was also very short (approximately 1 h), which was extended upon inhibition of proteasome function (Fig. 6B). Recently, neuronatin was shown to increase the intracellular Ca2+ levels by antagonizing the SERCA2 pump located in the ER. We have also observed that the overexpression or knockdown of neuronatin in Neuro 2a cells caused an increase or decrease in intracellular Ca2+, respectively (Fig. 6C). Thapsigargin, a noncompetitive inhibitor of SERCA pump, was used as positive control. Interestingly, co-expression of wild type malin significantly restored the neuronatin-induced increased intracellular Ca2+ (Fig. 6D). Malin also rescued neuronatin-induced apoptotic cell death (Fig. 6E). Although wild type malin had no effect on intracellular Ca2+ levels, its LD-associated C26S mutant caused significant increase in intracellular Ca2+ and also apoptosis. This is not surprising because the C26S mutant of malin is shown to form aggregates in cell culture and induce apoptosis (40).
Malin Suppresses Neuronatin-induced ER Stress and Proteasomal Dysfunction
Increased intracellular free Ca2+ as well as accumulation of misfolded proteins are known to generate ER stress in the cell. Because neuronatin increases the cytosolic Ca2+, we further tested its involvement on the ER stress. As shown in Fig. 7, ectopic expression of neuronatin in Neuro 2a cells resulted in ER stress in concentration-dependent manner as evident from the increased expression of Grp78, CHOP, and IRE-α. Transient co-expression of malin significantly suppressed neuronatin-induced ER stress (Fig. 7B). The C26S mutant of malin was also found to generate ER stress and amplified neuronatin-induced ER stress. We have also observed proteasomal dysfunction in neuronatin overexpressed cells as shown from the decrease in proteasome activity and increased accumulation of ubiquitinated proteins (Fig. 8, A and B). Neuronatin overexpression also caused increased accumulation of d1EGFP, a model substrate of proteasome with half-life of about 1 h (Fig. 8, C and D). Co-expression of malin along with neuronatin partially restored neuronatin-induced proteasomal inhibition (Fig. 8E). The C26S mutant of malin also inhibited cellular proteasomal function that was enhanced further in the presence of neuronatin. These in vitro studies indicate that increased accumulation of neuronatin is toxic to the neuron, which is mediated by increased intracellular free Ca2+ followed by ER stress and proteasomal dysfunction. LD-associated mutant malin also could be implicated in the ER stress generation, proteasomal dysfunction, and neurodegeneration.
DISCUSSION
We had demonstrated earlier that malin interacts with neuronatin and promotes its degradation through proteasome (39). Here, we provide substantial evidence that indicates the crucial role of neuronatin in LD pathogenesis. First, we show that the level of neuronatin is significantly increased in the sweat gland of skin of LD patients having mutations not only in malin but also in laforin in contrast to control samples. The neuronatin level is also increased and often aggregated and sometimes associated with Lafora bodies in cortical neurons of LD brain biopsy samples. Ectopic expression of neuronatin in the neuronal cell leads to increase in intracellular Ca2+ and induction of apoptotic cell death. Increased accumulation of neuronatin in the skin samples of either malin or laforin mutant patients implies that these two protein complexes are involved in the turnover of neuronatin. Laforin and malin are shown to function as a complex (14, 45, 46), and in the malin knock-out mice, laforin is increased in insoluble fraction (21, 22) and therefore might be biologically inactive. Similarly, in the absence of laforin, malin also could be nonfunctional because malin is shown to be an aggregation-prone protein and can be stabilized upon binding with laforin (40).
Neuronatin is highly expressed in neonatal brain and possibly involved in neural induction and neuronal differentiation during brain development (27, 38). In adult mice, it is also found to be selectively expressed in various limbic structures (31) of brain and several non-neural tissues including skin (33, 34). Existing literature suggests the involvement of neuronatin in the regulation of glycogen and lipid metabolism, and its mutation is associated with obesity (31, 32, 37, 39). The primary and secondary structure of neuronatin is also strikingly similar with phospholamban (an ER-resident Ca2+ regulator found in cardiac muscle), and recent reports have demonstrated that it is indeed involved in increasing the intracellular Ca2+ by antagonizing SERCA2 pump in the ER (27, 38). We have also detected a significant increase in intracellular Ca2+ in neuronatin-transfected neuroblastoma cells. Because malin regulates the neuronatin level, we speculate that malin might also be associated with certain aspects of brain development and regulation of metabolism.
Although the biological role of neuronatin in the skin is not clear, it is possible that a high level of neuronatin in LD skin might be involved with abnormal function of sweat gland and Lafora body formation. In the developing LD brain, the neuronatin level is increased and might be progressively accumulated as an insoluble aggregates in postmitotic neurons. Neuronatin seems to be an unfolded and aggregate prone protein that is recognized and rapidly cleared by UPS. Blockade of cellular proteasome function lead to its aberrant accumulation and aggregation. Therefore, lack of function of the malin-laforin complex could result in inefficient clearance of unfolded neuronatin leading to its accumulation and aggregation particularly in the neurons. Increased accumulation of neuronatin or its aggregates could potentially induce neurodegeneration by increasing intracellular Ca2+ overload followed by ER and proteasomal stress. We have also shown here that overexpression of malin partially recovered neuronatin-induced ER stress and proteasomal dysfunction and rescued the neuronatin-induced cell death. Our findings are consistent with other reports suggesting a role for malin-laforin complex in the clearance of misfolded proteins and involvement of ER stress in LD pathogenesis (46, 47).
Interestingly, neuronatin is highly expressed in PV+ve GABAergic interneuron, and these inhibitory interneurons dramatically degenerated in LD brain. PV is a Ca2+-buffering protein in cytosol, and expression of neuronatin in PV-containing GABAergic interneurons indicates that neuronatin might be playing a pivotal role in Ca2+-mediated GABAergic neurotransmission and signaling pathways. Excessive accumulation of neuronatin could potentially lead to the degeneration of these inhibitory interneurons in LD brain by disturbing Ca2+ homeostasis and inducing ER stress. Our findings are very similar with a recent report that demonstrates progressive degeneration of PV+ve GABAergic interneuron in the hippocampus of malin knock-out mice (23). The loss of PV+ve inhibitory interneurons in LD brain could potentially explain the rapidly progressing seizures and myoclonus in this disease.
Although the Lafora body is one of the common pathological hallmarks of LD, its involvement in disease pathogenesis is not clearly understood. In laforin-deficient mice, degenerating neurons sometimes lacked Lafora bodies (24), whereas depletion of protein targeting to glycogen in the same mice results in disappearance of Lafora bodies and rescue of neurodegeneration and seizures (25). Emerging literature now indicates that the defect in UPS and autophagy might be causative for the evolution of LD (17, 18, 26, 46, 47). Lafora bodies are found to be associated with various components of UPS and autophagy and could potentially induce the defect in these intracellular protein degradation pathways (17, 26). Accumulation of unfolded neuronatin along with LD-associated malin or laforin mutant proteins in neurons could also potentially disturb the protein quality control system. Taken together, our finding suggests that the neuronatin-induced aberrant Ca2+ signaling and ER stress might be an important contributor in LD pathogenesis. We also indicate that LD can now join to the list of neurodegenerative disorders involving accumulation of misfolded proteins.
This work was supported in part by a core grant from the Department of Biotechnology to National Brain Research Centre, Government of India, and Extramural Grant BT/PR13590/MED/30/286/2009 from the Department of Biotechnology, Government of India.
- LD
- Lafora disease
- dbcAMP
- dibutyryl-adenosine-3′,5′ cyclic monophosphate
- ER
- endoplasmic reticulum
- PAS
- Periodic acid Schiff
- PV+ve
- parvalbumin-positive
- SERCA2
- serco/endoplasmic reticulum Ca2+-ATPase-2
- UPS
- ubiquitin proteasome system
- Z
- benzoyloxycarbonyl
- MCA
- methyl cumaryl amide.
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