Skip to main content
Molecular and Cellular Biology logoLink to Molecular and Cellular Biology
. 1989 Jan;9(1):83–91. doi: 10.1128/mcb.9.1.83

Peroxisome targeting signal of rat liver acyl-coenzyme A oxidase resides at the carboxy terminus.

S Miyazawa 1, T Osumi 1, T Hashimoto 1, K Ohno 1, S Miura 1, Y Fujiki 1
PMCID: PMC362148  PMID: 2927399

Abstract

To identify the topogenic signal of peroxisomal acyl-coenzyme A oxidase (AOX) of rat liver, we carried out in vitro import experiments with mutant polypeptides of the enzyme. Full-length AOX and polypeptides that were truncated at the N-terminal region were efficiently imported into peroxisomes, as determined by resistance to externally added proteinase K. Polypeptides carrying internal deletions in the C-terminal region exhibited much lower import activities. Polypeptides that were truncated or mutated at the extreme C terminus were totally import negative. When the five amino acid residues at the extreme C terminus were attached to some of the import-negative polypeptides, the import activities were rescued. Moreover, the C-terminal 199 and 70 amino acid residues of AOX directed fusion proteins with two bacterial enzymes to peroxisomes. These results are interpreted to mean that the peroxisome targeting signal of AOX residues at the C terminus and the five or fewer residues at the extreme terminus have an obligatory function in targeting. The C-terminal internal region also has an important role for efficient import, possibly through a conformational effect.

Full text

PDF
83

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Baudhuin P., Beaufay H., Rahman-Li Y., Sellinger O. Z., Wattiaux R., Jacques P., De Duve C. Tissue fractionation studies. 17. Intracellular distribution of monoamine oxidase, aspartate aminotransferase, alanine aminotransferase, D-amino acid oxidase and catalase in rat-liver tissue. Biochem J. 1964 Jul;92(1):179–184. doi: 10.1042/bj0920179. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Beaufay H., Amar-Costesec A., Feytmans E., Thinès-Sempoux D., Wibo M., Robbi M., Berthet J. Analytical study of microsomes and isolated subcellular membranes from rat liver. I. Biochemical methods. J Cell Biol. 1974 Apr;61(1):188–200. doi: 10.1083/jcb.61.1.188. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Bethards L. A., Skadsen R. W., Scandalios J. G. Isolation and characterization of a cDNA clone for the Cat2 gene in maize and its homology with other catalases. Proc Natl Acad Sci U S A. 1987 Oct;84(19):6830–6834. doi: 10.1073/pnas.84.19.6830. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Bradford M. M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 1976 May 7;72:248–254. doi: 10.1006/abio.1976.9999. [DOI] [PubMed] [Google Scholar]
  5. DE DUVE C., PRESSMAN B. C., GIANETTO R., WATTIAUX R., APPELMANS F. Tissue fractionation studies. 6. Intracellular distribution patterns of enzymes in rat-liver tissue. Biochem J. 1955 Aug;60(4):604–617. doi: 10.1042/bj0600604. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. De Duve C., Baudhuin P. Peroxisomes (microbodies and related particles). Physiol Rev. 1966 Apr;46(2):323–357. doi: 10.1152/physrev.1966.46.2.323. [DOI] [PubMed] [Google Scholar]
  7. FINDLAY J., LEVVY G. A., MARSH C. A. Inhibition of glycosidases by aldonolactones of corresponding configuration. 2. Inhibitors of beta-N-acetylglucosaminidase. Biochem J. 1958 Jul;69(3):467–476. doi: 10.1042/bj0690467. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Fujiki Y., Fowler S., Shio H., Hubbard A. L., Lazarow P. B. Polypeptide and phospholipid composition of the membrane of rat liver peroxisomes: comparison with endoplasmic reticulum and mitochondrial membranes. J Cell Biol. 1982 Apr;93(1):103–110. doi: 10.1083/jcb.93.1.103. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Fujiki Y., Lazarow P. B. Post-translational import of fatty acyl-CoA oxidase and catalase into peroxisomes of rat liver in vitro. J Biol Chem. 1985 May 10;260(9):5603–5609. [PubMed] [Google Scholar]
  10. Fujiki Y., Rachubinski R. A., Lazarow P. B. Synthesis of a major integral membrane polypeptide of rat liver peroxisomes on free polysomes. Proc Natl Acad Sci U S A. 1984 Nov;81(22):7127–7131. doi: 10.1073/pnas.81.22.7127. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Furuta S., Hayashi H., Hijikata M., Miyazawa S., Osumi T., Hashimoto T. Complete nucleotide sequence of cDNA and deduced amino acid sequence of rat liver catalase. Proc Natl Acad Sci U S A. 1986 Jan;83(2):313–317. doi: 10.1073/pnas.83.2.313. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Ghosh M. K., Hajra A. K. A rapid method for the isolation of peroxisomes from rat liver. Anal Biochem. 1986 Nov 15;159(1):169–174. doi: 10.1016/0003-2697(86)90323-4. [DOI] [PubMed] [Google Scholar]
  13. Gorgas K. Peroxisomes in sebaceous glands. V. Complex peroxisomes in the mouse preputial gland: serial sectioning and three-dimensional reconstruction studies. Anat Embryol (Berl) 1984;169(3):261–270. doi: 10.1007/BF00315631. [DOI] [PubMed] [Google Scholar]
  14. Gorgas K. Serial section analysis of mouse hepatic peroxisomes. Anat Embryol (Berl) 1985;172(1):21–32. doi: 10.1007/BF00318940. [DOI] [PubMed] [Google Scholar]
  15. Gould S. G., Keller G. A., Subramani S. Identification of a peroxisomal targeting signal at the carboxy terminus of firefly luciferase. J Cell Biol. 1987 Dec;105(6 Pt 2):2923–2931. doi: 10.1083/jcb.105.6.2923. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Hijikata M., Ishii N., Kagamiyama H., Osumi T., Hashimoto T. Structural analysis of cDNA for rat peroxisomal 3-ketoacyl-CoA thiolase. J Biol Chem. 1987 Jun 15;262(17):8151–8158. [PubMed] [Google Scholar]
  17. Hill D. E., Boulay R., Rogers D. Complete nucleotide sequence of the peroxisomal acyl CoA oxidase from the alkane-utilizing yeast Candida maltosa. Nucleic Acids Res. 1988 Jan 11;16(1):365–366. doi: 10.1093/nar/16.1.365. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Imanaka T., Small G. M., Lazarow P. B. Translocation of acyl-CoA oxidase into peroxisomes requires ATP hydrolysis but not a membrane potential. J Cell Biol. 1987 Dec;105(6 Pt 2):2915–2922. doi: 10.1083/jcb.105.6.2915. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Janowicz Z. A., Eckart M. R., Drewke C., Roggenkamp R. O., Hollenberg C. P., Maat J., Ledeboer A. M., Visser C., Verrips C. T. Cloning and characterization of the DAS gene encoding the major methanol assimilatory enzyme from the methylotrophic yeast Hansenula polymorpha. Nucleic Acids Res. 1985 May 10;13(9):3043–3062. doi: 10.1093/nar/13.9.3043. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Keller G. A., Gould S., Deluca M., Subramani S. Firefly luciferase is targeted to peroxisomes in mammalian cells. Proc Natl Acad Sci U S A. 1987 May;84(10):3264–3268. doi: 10.1073/pnas.84.10.3264. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Lazarow P. B., Fujiki Y. Biogenesis of peroxisomes. Annu Rev Cell Biol. 1985;1:489–530. doi: 10.1146/annurev.cb.01.110185.002421. [DOI] [PubMed] [Google Scholar]
  22. Lazarow P. B., Robbi M., Fujiki Y., Wong L. Biogenesis of peroxisomal proteins in vivo and in vitro. Ann N Y Acad Sci. 1982;386:285–300. doi: 10.1111/j.1749-6632.1982.tb21423.x. [DOI] [PubMed] [Google Scholar]
  23. Ledeboer A. M., Edens L., Maat J., Visser C., Bos J. W., Verrips C. T., Janowicz Z., Eckart M., Roggenkamp R., Hollenberg C. P. Molecular cloning and characterization of a gene coding for methanol oxidase in Hansenula polymorpha. Nucleic Acids Res. 1985 May 10;13(9):3063–3082. doi: 10.1093/nar/13.9.3063. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Leighton F., Poole B., Beaufay H., Baudhuin P., Coffey J. W., Fowler S., De Duve C. The large-scale separation of peroxisomes, mitochondria, and lysosomes from the livers of rats injected with triton WR-1339. Improved isolation procedures, automated analysis, biochemical and morphological properties of fractions. J Cell Biol. 1968 May;37(2):482–513. doi: 10.1083/jcb.37.2.482. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Michels P. A., Poliszczak A., Osinga K. A., Misset O., Van Beeumen J., Wierenga R. K., Borst P., Opperdoes F. R. Two tandemly linked identical genes code for the glycosomal glyceraldehyde-phosphate dehydrogenase in Trypanosoma brucei. EMBO J. 1986 May;5(5):1049–1056. doi: 10.1002/j.1460-2075.1986.tb04321.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Miura S., Mori M., Takiguchi M., Tatibana M., Furuta S., Miyazawa S., Hashimoto T. Biosynthesis and intracellular transport of enzymes of peroxisomal beta-oxidation. J Biol Chem. 1984 May 25;259(10):6397–6402. [PubMed] [Google Scholar]
  27. Miyazawa S., Hayashi H., Hijikata M., Ishii N., Furuta S., Kagamiyama H., Osumi T., Hashimoto T. Complete nucleotide sequence of cDNA and predicted amino acid sequence of rat acyl-CoA oxidase. J Biol Chem. 1987 Jun 15;262(17):8131–8137. [PubMed] [Google Scholar]
  28. Murray W. W., Rachubinski R. A. The primary structure of a peroxisomal fatty acyl-CoA oxidase from the yeast Candida tropicalis pK233. Gene. 1987;51(2-3):119–128. doi: 10.1016/0378-1119(87)90300-3. [DOI] [PubMed] [Google Scholar]
  29. Nguyen T., Zelechowska M., Foster V., Bergmann H., Verma D. P. Primary structure of the soybean nodulin-35 gene encoding uricase II localized in the peroxisomes of uninfected cells of nodules. Proc Natl Acad Sci U S A. 1985 Aug;82(15):5040–5044. doi: 10.1073/pnas.82.15.5040. [DOI] [PMC free article] [PubMed] [Google Scholar]
  30. Okada H., Ueda M., Sugaya T., Atomi H., Mozaffar S., Hishida T., Teranishi Y., Okazaki K., Takechi T., Kamiryo T. Catalase gene of the yeast Candida tropicalis. Sequence analysis and comparison with peroxisomal and cytosolic catalases from other sources. Eur J Biochem. 1987 Dec 30;170(1-2):105–110. doi: 10.1111/j.1432-1033.1987.tb13673.x. [DOI] [PubMed] [Google Scholar]
  31. Okazaki K., Takechi T., Kambara N., Fukui S., Kubota I., Kamiryo T. Two acyl-coenzyme A oxidases in peroxisomes of the yeast Candida tropicalis: primary structures deduced from genomic DNA sequence. Proc Natl Acad Sci U S A. 1986 Mar;83(5):1232–1236. doi: 10.1073/pnas.83.5.1232. [DOI] [PMC free article] [PubMed] [Google Scholar]
  32. Okazaki K., Tan H., Fukui S., Kubota I., Kamiryo T. Peroxisomal acyl-coenzyme A oxidase multigene family of the yeast Candida tropicalis; nucleotide sequence of a third gene and its protein product. Gene. 1987;58(1):37–44. doi: 10.1016/0378-1119(87)90027-8. [DOI] [PubMed] [Google Scholar]
  33. Osinga K. A., Swinkels B. W., Gibson W. C., Borst P., Veeneman G. H., Van Boom J. H., Michels P. A., Opperdoes F. R. Topogenesis of microbody enzymes: a sequence comparison of the genes for the glycosomal (microbody) and cytosolic phosphoglycerate kinases of Trypanosoma brucei. EMBO J. 1985 Dec 30;4(13B):3811–3817. doi: 10.1002/j.1460-2075.1985.tb04152.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  34. Osumi T., Hashimoto T., Ui N. Purification and properties of acyl-CoA oxidase from rat liver. J Biochem. 1980 Jun;87(6):1735–1746. doi: 10.1093/oxfordjournals.jbchem.a132918. [DOI] [PubMed] [Google Scholar]
  35. Osumi T., Ishii N., Hijikata M., Kamijo K., Ozasa H., Furuta S., Miyazawa S., Kondo K., Inoue K., Kagamiyama H. Molecular cloning and nucleotide sequence of the cDNA for rat peroxisomal enoyl-CoA: hydratase-3-hydroxyacyl-CoA dehydrogenase bifunctional enzyme. J Biol Chem. 1985 Jul 25;260(15):8905–8910. [PubMed] [Google Scholar]
  36. Osumi T., Ishii N., Miyazawa S., Hashimoto T. Isolation and structural characterization of the rat acyl-CoA oxidase gene. J Biol Chem. 1987 Jun 15;262(17):8138–8143. [PubMed] [Google Scholar]
  37. Quan F., Korneluk R. G., Tropak M. B., Gravel R. A. Isolation and characterization of the human catalase gene. Nucleic Acids Res. 1986 Jul 11;14(13):5321–5335. doi: 10.1093/nar/14.13.5321. [DOI] [PMC free article] [PubMed] [Google Scholar]
  38. Ronchi S., Minchiotti L., Galliano M., Curti B., Swenson R. P., Williams C. H., Jr, Massey V. The primary structure of D-amino acid oxidase from pig kidney. II. Isolation and sequence of overlap peptides and the complete sequence. J Biol Chem. 1982 Aug 10;257(15):8824–8834. [PubMed] [Google Scholar]
  39. Sakajo S., Nakamura K., Asahi T. Molecular cloning and nucleotide sequence of full-length cDNA for sweet potato catalase mRNA. Eur J Biochem. 1987 Jun 1;165(2):437–442. doi: 10.1111/j.1432-1033.1987.tb11457.x. [DOI] [PubMed] [Google Scholar]
  40. Schroeder W. A., Shelton J. R., Shelton J. B., Robberson B., Apell G., Fang R. S., Bonaventura J. The complete amino acid sequence of bovine liver catalase and the partial sequence of bovine erythrocyte catalase. Arch Biochem Biophys. 1982 Mar;214(1):397–421. doi: 10.1016/0003-9861(82)90044-3. [DOI] [PubMed] [Google Scholar]
  41. Schutgens R. B., Heymans H. S., Wanders R. J., van den Bosch H., Tager J. M. Peroxisomal disorders: a newly recognised group of genetic diseases. Eur J Pediatr. 1986 Feb;144(5):430–440. doi: 10.1007/BF00441734. [DOI] [PubMed] [Google Scholar]
  42. Small G. M., Lazarow P. B. Import of the carboxy-terminal portion of acyl-CoA oxidase into peroxisomes of Candida tropicalis. J Cell Biol. 1987 Jul;105(1):247–250. doi: 10.1083/jcb.105.1.247. [DOI] [PMC free article] [PubMed] [Google Scholar]
  43. Small G. M., Szabo L. J., Lazarow P. B. Acyl-CoA oxidase contains two targeting sequences each of which can mediate protein import into peroxisomes. EMBO J. 1988 Apr;7(4):1167–1173. doi: 10.1002/j.1460-2075.1988.tb02927.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  44. Smith S. M., Leaver C. J. Glyoxysomal Malate Synthase of Cucumber: Molecular Cloning of a cDNA and Regulation of Enzyme Synthesis during Germination. Plant Physiol. 1986 Jul;81(3):762–767. doi: 10.1104/pp.81.3.762. [DOI] [PMC free article] [PubMed] [Google Scholar]
  45. Swinkels B. W., Evers R., Borst P. The topogenic signal of the glycosomal (microbody) phosphoglycerate kinase of Crithidia fasciculata resides in a carboxy-terminal extension. EMBO J. 1988 Apr;7(4):1159–1165. doi: 10.1002/j.1460-2075.1988.tb02926.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  46. Swinkels B. W., Gibson W. C., Osinga K. A., Kramer R., Veeneman G. H., van Boom J. H., Borst P. Characterization of the gene for the microbody (glycosomal) triosephosphate isomerase of Trypanosoma brucei. EMBO J. 1986 Jun;5(6):1291–1298. doi: 10.1002/j.1460-2075.1986.tb04358.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  47. Volokita M., Somerville C. R. The primary structure of spinach glycolate oxidase deduced from the DNA sequence of a cDNA clone. J Biol Chem. 1987 Nov 25;262(33):15825–15828. [PubMed] [Google Scholar]
  48. Wierenga R. K., Swinkels B., Michels P. A., Osinga K., Misset O., Van Beeumen J., Gibson W. C., Postma J. P., Borst P., Opperdoes F. R. Common elements on the surface of glycolytic enzymes from Trypanosoma brucei may serve as topogenic signals for import into glycosomes. EMBO J. 1987 Jan;6(1):215–221. doi: 10.1002/j.1460-2075.1987.tb04741.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  49. Yamamoto K., Fahimi H. D. Biogenesis of peroxisomes in regenerating rat liver. I. Sequential changes of catalase and urate oxidase detected by ultrastructural cytochemistry. Eur J Cell Biol. 1987 Jun;43(3):293–300. [PubMed] [Google Scholar]
  50. Yamamoto K., Fahimi H. D. Three-dimensional reconstruction of a peroxisomal reticulum in regenerating rat liver: evidence of interconnections between heterogeneous segments. J Cell Biol. 1987 Aug;105(2):713–722. doi: 10.1083/jcb.105.2.713. [DOI] [PMC free article] [PubMed] [Google Scholar]
  51. de Wet J. R., Wood K. V., DeLuca M., Helinski D. R., Subramani S. Firefly luciferase gene: structure and expression in mammalian cells. Mol Cell Biol. 1987 Feb;7(2):725–737. doi: 10.1128/mcb.7.2.725. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Molecular and Cellular Biology are provided here courtesy of Taylor & Francis

RESOURCES