Table 2.
Relative distribution of genes classified at 60%/90% cutoff among different genera. Sum of genes assigned to each family at each cutoff level equals 100%.
| Genome | Unamended | +O2-NO3- | +O2+NO3- | -O2-NO3- | -O2+NO3- |
|---|---|---|---|---|---|
| Methylococcaceae | |||||
| Methylobacter | 47.7/60.6 | 50.9/64.0 | 47.2/64.8 | 35.0/58.1 | 36.4/74.3 |
| Crenothrix | 30.0/30.1 | 19.4/17.5 | 12.7/5.2 | 38.5/31.0 | 36.2/19.0 |
| Methylomonas | 10.8/4.3 | 14.6/10.2 | 20.2/19.8 | 10.9/6.2 | 10.4/3.4 |
| Methylomicrobium | 7.4/3.8 | 11.4/7.5 | 17.6/10.1 | 9.1/4.0 | 8.0/2.9 |
| Methylocaldum | 2.3/<1 | 2.3/<1 | 1.5/1.2 | 3.9/<1 | 5.6/<1 |
| Methylococcus | 1.5/<1 | 1.4/<1 | <1/<1 | 2.7/<1 | 3.4/<1 |
| Methylocystaceae | |||||
| Methylocystis | 67.0/89.6 | 65.2/63.3 | 90.2/95.8 | 71.4/88.9 | 74.4/90.2 |
| Methylosinus | 33.0/10.4 | 34.8/36.7 | 9.8/4.2 | 28.6/11.1 | 25.6/9.8 |
| Methylophilaceae | |||||
| Methylotenera versatilis | 41.7/56.3 | 41.1/65.9 | 41.2/64.4 | 32.6/52.0 | 25.8/48.3 |
| Methylotenera mobilis | 21.5/24.8 | 21.1/17.7 | 41.5/28.2 | 21.6/25.0 | 26.3/35.4 |
| Methylovorus | 16.2/5.1 | 16.3/4.8 | 5.4/<1 | 17.8/9.7 | 19.4/3.3 |
| Methylobacillus | 9.7/3.2 | 8.5/2.4 | 2.1/<1 | 12.7/4.6 | 13.7/2.9 |
| Methylophilus | 3.4/2.3 | 2.9/1.8 | 2.4/<1 | 6.3/2.6 | 4.9/2.0 |
| Unclassified Methylophilaceae | 7.0/7.9 | 9.7/7.3 | 7.3/5.1 | 8.5/6.1 | 8.7/7.8 |
| Marine Methylophilaceae | <1/<1 | <1/<1 | <1/<1 | <1/0 | 1.2/<1 |