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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2013 Mar 20;69(Pt 4):o556. doi: 10.1107/S1600536813006995

3,3-Bis(4-bromo­phenyl­sulfan­yl)-1-methyl­piperidin-2-one

Julio Zukerman-Schpector a,*, Paulo R Olivato b, Carlos R Cerqueira Jr b, Bruna Contieri b, Seik Weng Ng c,d, Edward R T Tiekink c
PMCID: PMC3629608  PMID: 23634095

Abstract

In the title compound, C18H17Br2NOS2, the conformation of the piperidin-2-one ring is based on a half-chair with the methyl­ene C atom diagonally opposite the N atom being 0.649 (3) Å above the plane of the remaining five atoms (r.m.s. deviation = 0.1205 Å). The S atoms occupy axial and bis­ectional positions, and the dihedral angle between the benzene rings of 59.95 (11)° indicates a splayed disposition. Helical supra­molecular chains along the b axis sustained by C—H⋯O inter­actions is the major feature of the crystal packing. The chains are connected into a three-dimensional architecture by C—H⋯Br and C—H⋯π inter­actions.

Related literature  

For background to the chemistry and structures of β-thio-carbonyl compounds, see: Zukerman-Schpector et al. (2009); Vinhato (2007); Vinhato et al. (2011); Olivato et al. (2012, 2013). For the synthesis, see: Olivato et al. (2013). For ring conformational analysis, see: Cremer & Pople (1975).graphic file with name e-69-0o556-scheme1.jpg

Experimental  

Crystal data  

  • C18H17Br2NOS2

  • M r = 487.27

  • Monoclinic, Inline graphic

  • a = 7.8777 (1) Å

  • b = 9.6481 (1) Å

  • c = 24.6757 (3) Å

  • β = 93.190 (1)°

  • V = 1872.57 (4) Å3

  • Z = 4

  • Cu Kα radiation

  • μ = 7.61 mm−1

  • T = 100 K

  • 0.25 × 0.25 × 0.05 mm

Data collection  

  • Agilent SuperNova (Dual, Cu at zero, Atlas) diffractometer

  • Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) T min = 0.298, T max = 1.000

  • 18656 measured reflections

  • 3916 independent reflections

  • 3715 reflections with I > 2σ(I)

  • R int = 0.038

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.029

  • wR(F 2) = 0.077

  • S = 1.10

  • 3916 reflections

  • 218 parameters

  • H-atom parameters constrained

  • Δρmax = 0.71 e Å−3

  • Δρmin = −1.26 e Å−3

Data collection: CrysAlis PRO (Agilent, 2011); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813006995/hg5299sup1.cif

e-69-0o556-sup1.cif (20KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813006995/hg5299Isup2.hkl

e-69-0o556-Isup2.hkl (188.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813006995/hg5299Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg1 is the centroid of the C7–C12 ring.

D—H⋯A D—H H⋯A DA D—H⋯A
C9—H9⋯Br2i 0.95 2.87 3.744 (2) 154
C11—H11⋯O1ii 0.95 2.27 3.195 (3) 163
C1—H1BCg1i 0.98 2.86 3.660 (3) 139

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

We thank the Brazilian agencies FAPESP, CNPq and CAPES (808/2009 to JZ-S) for financial support. CRC and BC thank CNPq for scholarships; PRO and JZ-S thank CNPq for fellowships. We also thank the Ministry of Higher Education (Malaysia) for funding structural studies through the High-Impact Research scheme (UM.C/HIR-MOHE/SC/03).

supplementary crystallographic information

Comment

The title compound (I), Fig. 1, was studied as a part of an on-going investigation of conformational and electronic interactions in β-thio-carbonyl compounds, e.g. N,N-diethyl-2-[(4'-substituted) phenylthio]acetamides, N,N-diethyl-2-[(4'-substituted) phenylsulfonyl]acetamides and 3,3-bis[(4'-substituted phenylsulfany)]-1-methyl-2-piperidinones using spectroscopic, theoretical and X-ray diffraction methods (Vinhato, 2007; Zukerman-Schpector et al., 2009; Vinhato et al., 2011; Olivato et al., 2012; Olivato et al., 2013).

In (I), the conformation of the six-membered piperidin-2-one ring is highly distorted with the best description being one based on a half-chair with the C4 atom lying 0.649 (3) Å above the plane of the remaining five atoms (r.m.s. deviation = 0.1205 Å), with puckering parameters: q2 = 0.463 (2) Å and q3 = 0.275 (2) Å, and amplitudes: Q = 0.539 (2) Å, θ = 59.4 (2)° and φ2 = 214.7 (3)° (Cremer & Pople, 1975). The carbonyl-O1 and methyl-C1 atom occupy equatorial positions with respect to the piperidinyl ring while the S1 and S2 atoms are axial and bisectional, respectively. The dihedral angle between the benzene rings is 59.95 (11)°, indicating a splayed disposition.

The crystal packing features helical supramolecular chains along the b axis sustained by rather strong C—H···O interactions, Fig. 2 and Table 1. These are consolidated into a three-dimensional architecture by C—H···Br and C—H···π interactions, Fig. 3 and Table 1.

Experimental

The preparation of the title compound was recently described (Olivato et al., 2013). Suitable crystals were obtained by vapour diffusion of n-hexane into a chloroform solution at 283 K.; M.pt: 383–385 K.

Refinement

All H atoms were included in the riding-model approximation with C—H = 0.95–0.99 Å, and with Uiso(H) = 1.5Ueq(methyl-C) and 1.2Ueq(remaining-C). The maximum and minimum residual electron density peaks of 0.71 and -1.26 e Å-3, respectively, were located 0.77 and 0.72 Å from the Br2 atom.

Figures

Fig. 1.

Fig. 1.

Molecular structure of (I) showing atom labelling and displacement ellipsoids at the 50% probability level.

Fig. 2.

Fig. 2.

Helical supramolecular chain along the b axis sustained by C—H···.O interactions (blue dashed lines).

Fig. 3.

Fig. 3.

View in projection down the b axis of the unit-cell contents. The C—H···O, C—H···Br and C—H···π interactions are shown as blue, orange and purple dashed lines, respectively.

Crystal data

C18H17Br2NOS2 F(000) = 968
Mr = 487.27 Dx = 1.728 Mg m3
Monoclinic, P21/n Cu Kα radiation, λ = 1.5418 Å
Hall symbol: -P 2yn Cell parameters from 10597 reflections
a = 7.8777 (1) Å θ = 3.6–76.5°
b = 9.6481 (1) Å µ = 7.61 mm1
c = 24.6757 (3) Å T = 100 K
β = 93.190 (1)° Prism, colourless
V = 1872.57 (4) Å3 0.25 × 0.25 × 0.05 mm
Z = 4

Data collection

Agilent SuperNova (Dual, Cu at zero, Atlas) diffractometer 3916 independent reflections
Radiation source: SuperNova (Cu) X-ray Source 3715 reflections with I > 2σ(I)
Mirror monochromator Rint = 0.038
Detector resolution: 10.4041 pixels mm-1 θmax = 76.7°, θmin = 3.6°
ω scans h = −8→9
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) k = −11→12
Tmin = 0.298, Tmax = 1.000 l = −31→30
18656 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.077 H-atom parameters constrained
S = 1.10 w = 1/[σ2(Fo2) + (0.0402P)2 + 1.5955P] where P = (Fo2 + 2Fc2)/3
3916 reflections (Δ/σ)max < 0.001
218 parameters Δρmax = 0.71 e Å3
0 restraints Δρmin = −1.26 e Å3

Special details

Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Br1 0.20835 (4) 0.58290 (3) 0.025429 (10) 0.02829 (9)
Br2 0.82389 (3) 0.31232 (3) 0.521415 (11) 0.03241 (9)
S1 0.43546 (6) 0.86583 (5) 0.25378 (2) 0.01528 (11)
S2 0.39439 (6) 0.64897 (5) 0.33476 (2) 0.01610 (11)
O1 0.6089 (2) 0.90775 (16) 0.36438 (6) 0.0190 (3)
N1 0.8407 (2) 0.81429 (19) 0.32947 (7) 0.0166 (4)
C1 0.9475 (3) 0.8914 (3) 0.36927 (10) 0.0229 (5)
H1A 0.9052 0.8781 0.4055 0.034*
H1B 0.9443 0.9903 0.3601 0.034*
H1C 1.0648 0.8577 0.3689 0.034*
C2 0.6716 (3) 0.8271 (2) 0.33253 (8) 0.0144 (4)
C3 0.5560 (3) 0.7345 (2) 0.29522 (8) 0.0132 (4)
C4 0.6530 (3) 0.6307 (2) 0.26235 (8) 0.0143 (4)
H4A 0.5778 0.5947 0.2321 0.017*
H4B 0.6897 0.5516 0.2857 0.017*
C5 0.8078 (3) 0.6999 (2) 0.23983 (9) 0.0168 (4)
H5A 0.8652 0.6347 0.2159 0.020*
H5B 0.7722 0.7825 0.2182 0.020*
C6 0.9284 (3) 0.7424 (2) 0.28685 (9) 0.0195 (4)
H6A 0.9853 0.6588 0.3024 0.023*
H6B 1.0172 0.8040 0.2733 0.023*
C7 0.3782 (3) 0.7802 (2) 0.19177 (8) 0.0138 (4)
C8 0.4438 (3) 0.8300 (2) 0.14454 (9) 0.0183 (4)
H8 0.5235 0.9040 0.1463 0.022*
C9 0.3934 (3) 0.7720 (2) 0.09462 (9) 0.0208 (4)
H9 0.4372 0.8061 0.0621 0.025*
C10 0.2776 (3) 0.6631 (2) 0.09327 (9) 0.0171 (4)
C11 0.2116 (3) 0.6111 (2) 0.13980 (9) 0.0167 (4)
H11 0.1333 0.5361 0.1379 0.020*
C12 0.2618 (3) 0.6707 (2) 0.18945 (9) 0.0154 (4)
H12 0.2168 0.6369 0.2219 0.018*
C13 0.5212 (3) 0.5553 (2) 0.38409 (9) 0.0163 (4)
C14 0.5898 (3) 0.6240 (2) 0.42994 (9) 0.0208 (4)
H14 0.5735 0.7211 0.4336 0.025*
C15 0.6815 (3) 0.5517 (3) 0.47026 (9) 0.0239 (5)
H15 0.7290 0.5986 0.5014 0.029*
C16 0.7031 (3) 0.4095 (3) 0.46455 (10) 0.0222 (5)
C17 0.6353 (3) 0.3388 (2) 0.41976 (10) 0.0228 (5)
H17 0.6504 0.2415 0.4166 0.027*
C18 0.5445 (3) 0.4126 (2) 0.37925 (9) 0.0193 (4)
H18 0.4980 0.3654 0.3481 0.023*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Br1 0.04084 (17) 0.02690 (14) 0.01606 (13) −0.00348 (10) −0.00800 (10) −0.00344 (9)
Br2 0.03033 (15) 0.04426 (17) 0.02278 (14) 0.01094 (11) 0.00269 (10) 0.01732 (11)
S1 0.0192 (2) 0.0127 (2) 0.0134 (2) 0.00287 (17) −0.00357 (18) −0.00037 (17)
S2 0.0128 (2) 0.0221 (2) 0.0133 (2) −0.00130 (18) −0.00071 (17) 0.00314 (18)
O1 0.0211 (7) 0.0191 (7) 0.0165 (8) 0.0035 (6) −0.0020 (6) −0.0051 (6)
N1 0.0158 (9) 0.0185 (9) 0.0153 (9) −0.0012 (7) −0.0013 (7) −0.0003 (7)
C1 0.0186 (10) 0.0263 (11) 0.0230 (11) −0.0046 (9) −0.0066 (8) −0.0012 (9)
C2 0.0170 (10) 0.0129 (9) 0.0131 (9) 0.0011 (7) −0.0013 (7) 0.0025 (7)
C3 0.0143 (9) 0.0127 (9) 0.0123 (9) 0.0005 (7) −0.0006 (7) 0.0004 (7)
C4 0.0176 (9) 0.0122 (9) 0.0130 (9) 0.0014 (7) 0.0004 (7) −0.0002 (7)
C5 0.0198 (10) 0.0161 (9) 0.0149 (10) 0.0028 (8) 0.0048 (8) 0.0016 (7)
C6 0.0141 (10) 0.0211 (10) 0.0235 (11) 0.0013 (8) 0.0032 (8) −0.0003 (8)
C7 0.0141 (9) 0.0141 (9) 0.0128 (9) 0.0018 (7) −0.0033 (7) 0.0002 (7)
C8 0.0177 (10) 0.0196 (10) 0.0170 (10) −0.0052 (8) −0.0032 (8) 0.0050 (8)
C9 0.0226 (11) 0.0263 (11) 0.0134 (10) −0.0029 (9) −0.0008 (8) 0.0051 (8)
C10 0.0189 (10) 0.0178 (10) 0.0140 (10) 0.0020 (8) −0.0054 (8) −0.0007 (8)
C11 0.0150 (9) 0.0152 (9) 0.0193 (10) −0.0001 (8) −0.0035 (8) 0.0008 (8)
C12 0.0151 (9) 0.0159 (9) 0.0152 (10) 0.0015 (7) 0.0010 (7) 0.0035 (7)
C13 0.0135 (9) 0.0214 (10) 0.0139 (10) −0.0015 (8) 0.0006 (7) 0.0039 (8)
C14 0.0242 (11) 0.0221 (11) 0.0158 (10) −0.0019 (9) −0.0014 (8) 0.0017 (8)
C15 0.0281 (12) 0.0282 (12) 0.0150 (10) −0.0042 (9) −0.0031 (9) 0.0023 (9)
C16 0.0181 (10) 0.0298 (12) 0.0187 (11) 0.0019 (8) 0.0005 (8) 0.0119 (9)
C17 0.0227 (11) 0.0215 (11) 0.0247 (12) 0.0012 (9) 0.0052 (9) 0.0060 (9)
C18 0.0192 (10) 0.0203 (10) 0.0183 (10) −0.0035 (8) 0.0018 (8) 0.0007 (8)

Geometric parameters (Å, º)

Br1—C10 1.897 (2) C6—H6B 0.9900
Br2—C16 1.899 (2) C7—C8 1.387 (3)
S1—C7 1.775 (2) C7—C12 1.398 (3)
S1—C3 1.856 (2) C8—C9 1.391 (3)
S2—C13 1.778 (2) C8—H8 0.9500
S2—C3 1.842 (2) C9—C10 1.390 (3)
O1—C2 1.229 (3) C9—H9 0.9500
N1—C2 1.344 (3) C10—C11 1.381 (3)
N1—C1 1.461 (3) C11—C12 1.391 (3)
N1—C6 1.465 (3) C11—H11 0.9500
C1—H1A 0.9800 C12—H12 0.9500
C1—H1B 0.9800 C13—C14 1.394 (3)
C1—H1C 0.9800 C13—C18 1.396 (3)
C2—C3 1.543 (3) C14—C15 1.385 (3)
C3—C4 1.521 (3) C14—H14 0.9500
C4—C5 1.522 (3) C15—C16 1.391 (3)
C4—H4A 0.9900 C15—H15 0.9500
C4—H4B 0.9900 C16—C17 1.380 (4)
C5—C6 1.515 (3) C17—C18 1.392 (3)
C5—H5A 0.9900 C17—H17 0.9500
C5—H5B 0.9900 C18—H18 0.9500
C6—H6A 0.9900
C7—S1—C3 104.77 (9) H6A—C6—H6B 107.9
C13—S2—C3 102.22 (9) C8—C7—C12 120.11 (19)
C2—N1—C1 116.82 (18) C8—C7—S1 118.33 (16)
C2—N1—C6 126.33 (18) C12—C7—S1 121.44 (16)
C1—N1—C6 116.53 (18) C7—C8—C9 120.2 (2)
N1—C1—H1A 109.5 C7—C8—H8 119.9
N1—C1—H1B 109.5 C9—C8—H8 119.9
H1A—C1—H1B 109.5 C10—C9—C8 118.7 (2)
N1—C1—H1C 109.5 C10—C9—H9 120.7
H1A—C1—H1C 109.5 C8—C9—H9 120.7
H1B—C1—H1C 109.5 C11—C10—C9 122.1 (2)
O1—C2—N1 121.9 (2) C11—C10—Br1 118.85 (16)
O1—C2—C3 120.20 (18) C9—C10—Br1 119.05 (17)
N1—C2—C3 117.86 (18) C10—C11—C12 118.72 (19)
C4—C3—C2 113.70 (17) C10—C11—H11 120.6
C4—C3—S2 111.69 (14) C12—C11—H11 120.6
C2—C3—S2 110.22 (14) C11—C12—C7 120.1 (2)
C4—C3—S1 114.37 (14) C11—C12—H12 119.9
C2—C3—S1 101.59 (13) C7—C12—H12 119.9
S2—C3—S1 104.48 (10) C14—C13—C18 119.5 (2)
C3—C4—C5 109.99 (17) C14—C13—S2 119.46 (17)
C3—C4—H4A 109.7 C18—C13—S2 120.96 (17)
C5—C4—H4A 109.7 C15—C14—C13 120.4 (2)
C3—C4—H4B 109.7 C15—C14—H14 119.8
C5—C4—H4B 109.7 C13—C14—H14 119.8
H4A—C4—H4B 108.2 C14—C15—C16 119.1 (2)
C6—C5—C4 108.68 (17) C14—C15—H15 120.5
C6—C5—H5A 110.0 C16—C15—H15 120.5
C4—C5—H5A 110.0 C17—C16—C15 121.6 (2)
C6—C5—H5B 110.0 C17—C16—Br2 120.25 (18)
C4—C5—H5B 110.0 C15—C16—Br2 118.10 (18)
H5A—C5—H5B 108.3 C16—C17—C18 118.9 (2)
N1—C6—C5 112.15 (17) C16—C17—H17 120.6
N1—C6—H6A 109.2 C18—C17—H17 120.6
C5—C6—H6A 109.2 C17—C18—C13 120.5 (2)
N1—C6—H6B 109.2 C17—C18—H18 119.7
C5—C6—H6B 109.2 C13—C18—H18 119.7
C1—N1—C2—O1 5.5 (3) C3—S1—C7—C12 67.81 (18)
C6—N1—C2—O1 −167.7 (2) C12—C7—C8—C9 0.4 (3)
C1—N1—C2—C3 −173.40 (18) S1—C7—C8—C9 −175.67 (17)
C6—N1—C2—C3 13.4 (3) C7—C8—C9—C10 −0.5 (3)
O1—C2—C3—C4 −174.26 (18) C8—C9—C10—C11 0.0 (3)
N1—C2—C3—C4 4.6 (3) C8—C9—C10—Br1 −179.85 (17)
O1—C2—C3—S2 −48.0 (2) C9—C10—C11—C12 0.6 (3)
N1—C2—C3—S2 130.94 (17) Br1—C10—C11—C12 −179.60 (15)
O1—C2—C3—S1 62.4 (2) C10—C11—C12—C7 −0.6 (3)
N1—C2—C3—S1 −118.72 (17) C8—C7—C12—C11 0.1 (3)
C13—S2—C3—C4 68.86 (16) S1—C7—C12—C11 176.10 (16)
C13—S2—C3—C2 −58.56 (15) C3—S2—C13—C14 80.85 (19)
C13—S2—C3—S1 −166.99 (10) C3—S2—C13—C18 −103.11 (18)
C7—S1—C3—C4 30.32 (17) C18—C13—C14—C15 0.5 (3)
C7—S1—C3—C2 153.23 (13) S2—C13—C14—C15 176.61 (18)
C7—S1—C3—S2 −92.10 (11) C13—C14—C15—C16 −0.5 (4)
C2—C3—C4—C5 −42.8 (2) C14—C15—C16—C17 0.0 (4)
S2—C3—C4—C5 −168.28 (14) C14—C15—C16—Br2 −178.26 (18)
S1—C3—C4—C5 73.31 (19) C15—C16—C17—C18 0.5 (4)
C3—C4—C5—C6 64.5 (2) Br2—C16—C17—C18 178.74 (17)
C2—N1—C6—C5 9.0 (3) C16—C17—C18—C13 −0.5 (3)
C1—N1—C6—C5 −164.26 (18) C14—C13—C18—C17 0.0 (3)
C4—C5—C6—N1 −47.3 (2) S2—C13—C18—C17 −176.02 (17)
C3—S1—C7—C8 −116.16 (17)

Hydrogen-bond geometry (Å, º)

Cg1 is the centroid of the C7–C12 ring.

D—H···A D—H H···A D···A D—H···A
C9—H9···Br2i 0.95 2.87 3.744 (2) 154
C11—H11···O1ii 0.95 2.27 3.195 (3) 163
C1—H1B···Cg1i 0.98 2.86 3.660 (3) 139

Symmetry codes: (i) −x+3/2, y+1/2, −z+1/2; (ii) −x+1/2, y−1/2, −z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HG5299).

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813006995/hg5299sup1.cif

e-69-0o556-sup1.cif (20KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813006995/hg5299Isup2.hkl

e-69-0o556-Isup2.hkl (188.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813006995/hg5299Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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