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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2013 Mar 23;69(Pt 4):o571. doi: 10.1107/S1600536813007319

(E)-[2-(1,3-Dithio­lan-2-yl­idene)hydrazinyl­idene](3-fluoro­phen­yl)methyl 3-fluoro­benzoate

Ling Yin a,*
PMCID: PMC3629619  PMID: 23634106

Abstract

In the title compound, C17H12F2N2O2S2, the conformation of the dithia­cyclo­pentane ring is a half-chair, with a total puckering amplitude Q T = 0.460 (1) Å. π–π inter­actions [centroid–centroid distance = 3.585 (9) Å between the fluoro­phenyl rings of neighbouring mol­ecules] and C—H⋯N and C—H⋯O inter­actions help to stabilize the crystal structure and form ladders along the c axis.

Related literature  

For the use of dithio­lan heterocyclic compounds as broad-spectrum fungicides, see: Tanaka et al. (1976); Wang et al. (1994).graphic file with name e-69-0o571-scheme1.jpg

Experimental  

Crystal data  

  • C17H12F2N2O2S2

  • M r = 378.41

  • Triclinic, Inline graphic

  • a = 9.124 (4) Å

  • b = 9.757 (4) Å

  • c = 10.738 (4) Å

  • α = 104.592 (3)°

  • β = 110.326 (5)°

  • γ = 101.194 (4)°

  • V = 824.6 (6) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.36 mm−1

  • T = 113 K

  • 0.20 × 0.20 × 0.20 mm

Data collection  

  • Rigaku Saturn724 CCD diffractometer

  • Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2009) T min = 0.932, T max = 0.932

  • 7057 measured reflections

  • 2896 independent reflections

  • 2098 reflections with I > 2σ(I)

  • R int = 0.036

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.031

  • wR(F 2) = 0.076

  • S = 0.96

  • 2896 reflections

  • 226 parameters

  • H-atom parameters constrained

  • Δρmax = 0.39 e Å−3

  • Δρmin = −0.20 e Å−3

Data collection: CrystalClear-SM Expert (Rigaku/MSC, 2009); cell refinement: CrystalClear-SM Expert; data reduction: CrystalClear-SM Expert; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813007319/hg5300sup1.cif

e-69-0o571-sup1.cif (18.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813007319/hg5300Isup2.hkl

e-69-0o571-Isup2.hkl (142.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813007319/hg5300Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C9—H9B⋯O2i 0.97 2.49 3.280 (2) 138
C10—H10B⋯O2ii 0.97 2.46 3.248 (2) 138
C13—H13A⋯N1iii 0.93 2.50 3.424 (3) 176

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

The author thanks the Jining University Foundation (No. 2012YYJJ07) for financial support of this work.

supplementary crystallographic information

Comment

Many dithiolan heterocyclic compounds have been widely used as potent and broad-spectrum fungicides (Tanaka et al., 1976; Wang et al., 1994). In order to search for new heterocylic compounds with higher biological activities, we synthesized the (E)-((1,3-dithiolan-2-yl)diazenyl)(3-fluorophenyl)methyl 3-fluorobenzoate and describe its structure here.

In the title compound, C17H12F2N2O2S2, the conformation of the dithiacyclopentane ring (C8—C10/S1—S2) is halfchair, with a total puckering amplitude QT = 0.460 (1) Å. π-π interactions (centroid-to-centroid distances 3.585 (9) Å between the fluorophenyl rings (C12—C17) of neighbouring molecules) and intermolecular C—H···N and C—H···O interactions help to stabilize the crystal structure (Table 1).

Experimental

1.34 g (10 mmol) of (1,3-dithiolan-2-ylidene)hydrazine and 20 mmol triethylamine was dissolved in 15 ml of dichloromethane and stirred at room temperature, 3.17 g (20 mmol) 3-fluorobenzoyl chloride was added dropwise to the mixture. The reaction mixture was stirred vigorously at 273 K for 3 h. The reaction mixture was poured into 200 ml of water and extracted with three 50-ml portions of dichloromethane. The combined extracts were washed with saturated brine, dried over anhydrous sodium sulfate and evaporated on a rotary evaporator to afford the crude product, which was purified by column chromatography to yield the pure product as colorless crystals. Single crystals suitable for X-ray diffraction were obtained through slow evaporation of a solution of the pure title compound in ethanol.

Refinement

All H atoms bonded on carbon were found on difference maps, with C–H = 0.93 or 0.97 Å, and included in the final cycles of refinement using a riding model, with Uiso(H) = 1.2Ueq(C).

Figures

Fig. 1.

Fig. 1.

View of the title compound showing the atomic numbering and 40% probability displacement ellipsoids.

Crystal data

C17H12F2N2O2S2 Z = 2
Mr = 378.41 F(000) = 388
Triclinic, P1 Dx = 1.524 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 9.124 (4) Å Cell parameters from 2617 reflections
b = 9.757 (4) Å θ = 2.2–27.9°
c = 10.738 (4) Å µ = 0.36 mm1
α = 104.592 (3)° T = 113 K
β = 110.326 (5)° Block, colorless
γ = 101.194 (4)° 0.20 × 0.20 × 0.20 mm
V = 824.6 (6) Å3

Data collection

Rigaku Saturn724 CCD diffractometer 2896 independent reflections
Radiation source: rotating anode 2098 reflections with I > 2σ(I)
Multilayer monochromator Rint = 0.036
Detector resolution: 14.22 pixels mm-1 θmax = 25.0°, θmin = 2.2°
ω and φ scans h = −10→10
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2009) k = −11→11
Tmin = 0.932, Tmax = 0.932 l = −12→12
7057 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.076 H-atom parameters constrained
S = 0.96 w = 1/[σ2(Fo2) + (0.0322P)2] where P = (Fo2 + 2Fc2)/3
2896 reflections (Δ/σ)max = 0.001
226 parameters Δρmax = 0.39 e Å3
0 restraints Δρmin = −0.20 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.10124 (6) 0.83442 (5) 0.59445 (5) 0.02517 (15)
O1 −0.12238 (14) 1.08666 (13) 0.92674 (12) 0.0209 (3)
N1 −0.06721 (17) 0.92577 (15) 0.75780 (14) 0.0183 (4)
F1 −0.49133 (14) 0.43408 (13) 0.61224 (12) 0.0447 (4)
C1 −0.3309 (2) 0.6858 (2) 0.71390 (18) 0.0234 (5)
H1B −0.2714 0.6668 0.6602 0.028*
S2 0.31536 (6) 1.14801 (5) 0.73274 (5) 0.02773 (15)
F2 0.06577 (13) 1.50851 (11) 1.36811 (11) 0.0320 (3)
O2 −0.27848 (15) 1.15266 (14) 0.75200 (12) 0.0241 (3)
N2 0.05995 (17) 1.05067 (16) 0.78311 (15) 0.0205 (4)
C2 −0.4583 (2) 0.5746 (2) 0.7016 (2) 0.0300 (5)
C3 −0.5519 (2) 0.5965 (2) 0.7762 (2) 0.0378 (6)
H3A −0.6389 0.5187 0.7637 0.045*
C4 −0.5130 (2) 0.7376 (3) 0.8706 (2) 0.0375 (6)
H4A −0.5742 0.7552 0.9231 0.045*
C5 −0.3846 (2) 0.8530 (2) 0.88806 (19) 0.0277 (5)
H5A −0.3591 0.9474 0.9524 0.033*
C6 −0.2929 (2) 0.8280 (2) 0.80908 (18) 0.0194 (4)
C7 −0.1555 (2) 0.94860 (19) 0.82551 (17) 0.0177 (4)
C8 0.1433 (2) 1.01277 (19) 0.71174 (18) 0.0196 (4)
C9 0.2838 (2) 0.8807 (2) 0.56131 (19) 0.0281 (5)
H9A 0.3748 0.8649 0.6302 0.034*
H9B 0.2634 0.8176 0.4675 0.034*
C10 0.3251 (2) 1.0425 (2) 0.57270 (19) 0.0273 (5)
H10A 0.2471 1.0544 0.4909 0.033*
H10B 0.4345 1.0771 0.5771 0.033*
C11 −0.1953 (2) 1.18274 (19) 0.87559 (19) 0.0183 (4)
C12 −0.1586 (2) 1.32341 (19) 0.99052 (18) 0.0176 (4)
C13 −0.0640 (2) 1.3463 (2) 1.13176 (18) 0.0193 (4)
H13A −0.0256 1.2719 1.1584 0.023*
C14 −0.0294 (2) 1.4828 (2) 1.23034 (18) 0.0214 (4)
C15 −0.0852 (2) 1.5955 (2) 1.19552 (19) 0.0219 (4)
H15A −0.0584 1.6869 1.2650 0.026*
C16 −0.1816 (2) 1.5698 (2) 1.05533 (19) 0.0235 (5)
H16A −0.2215 1.6441 1.0299 0.028*
C17 −0.2192 (2) 1.4342 (2) 0.95261 (19) 0.0211 (4)
H17A −0.2847 1.4171 0.8584 0.025*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0288 (3) 0.0228 (3) 0.0234 (3) 0.0054 (2) 0.0145 (2) 0.0038 (2)
O1 0.0265 (7) 0.0204 (7) 0.0161 (7) 0.0112 (6) 0.0082 (6) 0.0048 (6)
N1 0.0181 (8) 0.0184 (8) 0.0171 (8) 0.0044 (7) 0.0065 (7) 0.0062 (7)
F1 0.0460 (8) 0.0304 (7) 0.0372 (7) −0.0090 (6) 0.0073 (6) 0.0089 (6)
C1 0.0196 (10) 0.0296 (11) 0.0191 (10) 0.0050 (9) 0.0059 (9) 0.0106 (9)
S2 0.0240 (3) 0.0262 (3) 0.0290 (3) 0.0009 (2) 0.0132 (2) 0.0055 (2)
F2 0.0423 (7) 0.0278 (6) 0.0184 (6) 0.0112 (5) 0.0067 (5) 0.0041 (5)
O2 0.0255 (7) 0.0278 (7) 0.0168 (7) 0.0102 (6) 0.0054 (6) 0.0076 (6)
N2 0.0213 (9) 0.0163 (8) 0.0221 (8) 0.0036 (7) 0.0093 (7) 0.0052 (7)
C2 0.0285 (12) 0.0274 (11) 0.0230 (11) 0.0003 (9) 0.0028 (10) 0.0088 (10)
C3 0.0219 (12) 0.0488 (15) 0.0404 (13) −0.0011 (11) 0.0090 (11) 0.0265 (12)
C4 0.0287 (12) 0.0591 (16) 0.0381 (13) 0.0155 (11) 0.0211 (11) 0.0265 (12)
C5 0.0259 (11) 0.0374 (12) 0.0253 (11) 0.0146 (10) 0.0111 (10) 0.0156 (10)
C6 0.0178 (10) 0.0271 (11) 0.0146 (10) 0.0087 (8) 0.0051 (8) 0.0101 (9)
C7 0.0204 (10) 0.0196 (10) 0.0119 (9) 0.0090 (8) 0.0040 (8) 0.0056 (8)
C8 0.0211 (10) 0.0195 (10) 0.0166 (10) 0.0067 (8) 0.0050 (9) 0.0074 (8)
C9 0.0277 (12) 0.0366 (12) 0.0230 (11) 0.0118 (10) 0.0136 (10) 0.0092 (10)
C10 0.0207 (10) 0.0397 (12) 0.0225 (11) 0.0069 (9) 0.0100 (9) 0.0130 (10)
C11 0.0157 (10) 0.0218 (10) 0.0224 (11) 0.0063 (8) 0.0110 (9) 0.0111 (9)
C12 0.0149 (10) 0.0203 (10) 0.0200 (10) 0.0037 (8) 0.0102 (8) 0.0080 (8)
C13 0.0195 (10) 0.0205 (10) 0.0227 (10) 0.0079 (8) 0.0110 (9) 0.0106 (9)
C14 0.0228 (11) 0.0244 (11) 0.0169 (10) 0.0065 (9) 0.0090 (9) 0.0065 (9)
C15 0.0238 (11) 0.0172 (10) 0.0254 (11) 0.0050 (8) 0.0141 (9) 0.0041 (9)
C16 0.0245 (11) 0.0217 (10) 0.0301 (11) 0.0103 (9) 0.0150 (10) 0.0110 (9)
C17 0.0204 (10) 0.0242 (10) 0.0222 (10) 0.0073 (8) 0.0102 (9) 0.0114 (9)

Geometric parameters (Å, º)

S1—C8 1.7499 (19) C5—C6 1.395 (2)
S1—C9 1.8178 (18) C5—H5A 0.9300
O1—C11 1.368 (2) C6—C7 1.469 (2)
O1—C7 1.401 (2) C9—C10 1.513 (3)
N1—C7 1.274 (2) C9—H9A 0.9700
N1—N2 1.4036 (19) C9—H9B 0.9700
F1—C2 1.366 (2) C10—H10A 0.9700
C1—C2 1.370 (2) C10—H10B 0.9700
C1—C6 1.394 (2) C11—C12 1.483 (2)
C1—H1B 0.9300 C12—C17 1.392 (3)
S2—C8 1.7480 (18) C12—C13 1.393 (2)
S2—C10 1.8088 (19) C13—C14 1.374 (2)
F2—C14 1.357 (2) C13—H13A 0.9300
O2—C11 1.200 (2) C14—C15 1.378 (3)
N2—C8 1.294 (2) C15—C16 1.381 (2)
C2—C3 1.370 (3) C15—H15A 0.9300
C3—C4 1.381 (3) C16—C17 1.382 (2)
C3—H3A 0.9300 C16—H16A 0.9300
C4—C5 1.380 (3) C17—H17A 0.9300
C4—H4A 0.9300
C8—S1—C9 95.19 (8) S1—C9—H9A 110.1
C11—O1—C7 115.41 (14) C10—C9—H9B 110.1
C7—N1—N2 115.89 (14) S1—C9—H9B 110.1
C2—C1—C6 118.25 (17) H9A—C9—H9B 108.4
C2—C1—H1B 120.9 C9—C10—S2 107.36 (12)
C6—C1—H1B 120.9 C9—C10—H10A 110.2
C8—S2—C10 94.44 (8) S2—C10—H10A 110.2
C8—N2—N1 110.12 (14) C9—C10—H10B 110.2
F1—C2—C1 118.15 (17) S2—C10—H10B 110.2
F1—C2—C3 118.45 (17) H10A—C10—H10B 108.5
C1—C2—C3 123.39 (19) O2—C11—O1 122.43 (17)
C2—C3—C4 117.95 (18) O2—C11—C12 125.87 (18)
C2—C3—H3A 121.0 O1—C11—C12 111.70 (15)
C4—C3—H3A 121.0 C17—C12—C13 120.61 (17)
C5—C4—C3 120.84 (18) C17—C12—C11 117.79 (17)
C5—C4—H4A 119.6 C13—C12—C11 121.59 (18)
C3—C4—H4A 119.6 C14—C13—C12 117.59 (18)
C4—C5—C6 119.96 (18) C14—C13—H13A 121.2
C4—C5—H5A 120.0 C12—C13—H13A 121.2
C6—C5—H5A 120.0 F2—C14—C13 118.49 (18)
C1—C6—C5 119.59 (17) F2—C14—C15 118.47 (16)
C1—C6—C7 119.26 (15) C13—C14—C15 123.03 (18)
C5—C6—C7 121.15 (16) C14—C15—C16 118.59 (17)
N1—C7—O1 122.72 (15) C14—C15—H15A 120.7
N1—C7—C6 121.68 (16) C16—C15—H15A 120.7
O1—C7—C6 115.47 (14) C15—C16—C17 120.32 (19)
N2—C8—S2 118.67 (14) C15—C16—H16A 119.8
N2—C8—S1 125.76 (13) C17—C16—H16A 119.8
S2—C8—S1 115.57 (10) C16—C17—C12 119.84 (18)
C10—C9—S1 108.17 (13) C16—C17—H17A 120.1
C10—C9—H9A 110.1 C12—C17—H17A 120.1
C7—N1—N2—C8 178.22 (16) C10—S2—C8—S1 17.80 (12)
C6—C1—C2—F1 −177.56 (17) C9—S1—C8—N2 −174.67 (17)
C6—C1—C2—C3 1.1 (3) C9—S1—C8—S2 4.65 (12)
F1—C2—C3—C4 177.36 (18) C8—S1—C9—C10 −31.34 (14)
C1—C2—C3—C4 −1.3 (3) S1—C9—C10—S2 46.97 (15)
C2—C3—C4—C5 0.5 (3) C8—S2—C10—C9 −38.84 (15)
C3—C4—C5—C6 0.4 (3) C7—O1—C11—O2 −1.9 (2)
C2—C1—C6—C5 −0.1 (3) C7—O1—C11—C12 177.88 (12)
C2—C1—C6—C7 179.21 (16) O2—C11—C12—C17 −3.1 (3)
C4—C5—C6—C1 −0.6 (3) O1—C11—C12—C17 177.18 (14)
C4—C5—C6—C7 −179.95 (17) O2—C11—C12—C13 178.22 (16)
N2—N1—C7—O1 −4.3 (2) O1—C11—C12—C13 −1.5 (2)
N2—N1—C7—C6 179.92 (15) C17—C12—C13—C14 −1.8 (2)
C11—O1—C7—N1 89.6 (2) C11—C12—C13—C14 176.82 (14)
C11—O1—C7—C6 −94.45 (18) C12—C13—C14—F2 −178.49 (14)
C1—C6—C7—N1 −1.9 (3) C12—C13—C14—C15 0.6 (3)
C5—C6—C7—N1 177.38 (17) F2—C14—C15—C16 179.79 (15)
C1—C6—C7—O1 −177.96 (16) C13—C14—C15—C16 0.7 (3)
C5—C6—C7—O1 1.4 (2) C14—C15—C16—C17 −0.8 (3)
N1—N2—C8—S2 −176.83 (12) C15—C16—C17—C12 −0.4 (3)
N1—N2—C8—S1 2.5 (2) C13—C12—C17—C16 1.8 (2)
C10—S2—C8—N2 −162.83 (16) C11—C12—C17—C16 −176.95 (15)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
C9—H9B···O2i 0.97 2.49 3.280 (2) 138
C10—H10B···O2ii 0.97 2.46 3.248 (2) 138
C13—H13A···N1iii 0.93 2.50 3.424 (3) 176

Symmetry codes: (i) −x, −y+2, −z+1; (ii) x+1, y, z; (iii) −x, −y+2, −z+2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HG5300).

References

  1. Rigaku/MSC (2009). CrystalClear-SM Expert and CrystalStructure Rigaku/MSC, The Woodlands, Texas, USA.
  2. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  3. Tanaka, H., Araki, F., Harada, T. & Kurono, H. (1976). Jpn Patent No. 51151326A.
  4. Wang, Y., Li, Z. H. & Gao, N. (1994). Yaoxue Xuebao, 29, 78–80.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813007319/hg5300sup1.cif

e-69-0o571-sup1.cif (18.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813007319/hg5300Isup2.hkl

e-69-0o571-Isup2.hkl (142.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813007319/hg5300Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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