Abstract
The motor domain of myosin is the core element performing mechanochemical energy transduction. This domain contains the actin and ATP binding sites and the base of the force-transducing lever. Coordinated subdomain movements within the motor are essential in linking the ATPase chemical cycle to translocation along actin filaments. A dynamic subdomain interface located at the base of the lever was previously shown to exert an allosteric influence on ATP hydrolysis in the non-processive myosin 2 motor. By solution kinetic, spectroscopic and ensemble and single-molecule motility experiments, we determined the role of a class-specific adaptation of this interface in the mechanochemical mechanism of myosin 5a, a processive intracellular transporter. We found that the introduction of a myosin 2-specific repulsive interaction into myosin 5a via the I67K mutation perturbs the strong-binding interaction of myosin 5a with actin, influences the mechanism of ATP binding and facilitates ATP hydrolysis. At the same time, the mutation abolishes the actin-induced activation of ADP release and, in turn, slows down processive motility, especially when myosin experiences mechanical drag exerted by the action of multiple motor molecules bound to the same actin filament. The results highlight that subtle structural adaptations of the common structural scaffold of the myosin motor enable specific allosteric tuning of motor activity shaped by widely differing physiological demands.
Introduction
Myosins are ubiquitous molecular motors of eukaryotic cells that utilize the free energy from ATP hydrolysis for unidirectional translocation along actin filaments [1]–[3]. The mechanochemical activity of different myosins drives a range of physiological processes ranging from muscle contraction, cell division and differentiation to membrane movements and intracellular transport. The motor domain (MD) of myosin, the core element driving mechanochemical action, contains the actin and ATP binding sites as well as the base of the myosin lever ( Fig. 1A ) [4]. The latter element amplifies structural changes occurring within the MD during the ATPase cycle to produce movement along actin. During the mechanochemical cycle, the binding of ATP to the actin-bound MD (step K 1’ in Fig. 1B ) weakens the actin affinity of different myosins by 3–6 orders of magnitude via allosteric changes (K 2’) [5]–[10]. This process involves a structural transition from a strongly actin-bound nucleotide-free (rigor) to a strongly nucleotide-bound actin-detached (postrigor) state ( Fig. 1A ). The bound ATP then induces the priming of the myosin lever (a process termed recovery stroke, leading to the prepowerstroke conformation), which also brings catalytic residues into place for ATP hydrolysis ( Fig. 1A ; K 3 in Fig. 1B ) [11], [12]. After ATP is hydrolyzed (K 3), the myosin.ADP.phosphate (Pi) complex rebinds to actin (K 9). This process triggers the kinetic activation of the release of hydrolysis products Pi and ADP (K 4’ and K 5’, respectively), linked to the strengthening of the actomyosin interaction, and the swing of the lever leading to the powerstroke [13], [14].
The MD is a complex structure comprising four subdomains, termed sequentially the N-terminal, upper and lower 50-kDa subdomains (NTS, U50 and L50, respectively) and the converter [4], [12]. Structural changes during the working cycle involve dynamic movements of subdomains. The NTS-converter interface is located at the base of the lever, remote from the actin and ATP binding sites ( Fig. 1A ). In the vast majority of myosin 2 isoforms, which are filament-forming motors driving muscle contraction and cell division, this interface harbors an unusual repulsive interaction between the side chains of a conserved lysine of the NTS and a conserved arginine of the converter ( Fig. 1A , Table S1) [1]. Class 5 myosins, many of which are processive intracellular transporters, harbor a hydrophobic residue (mostly isoleucine) in the homologous position of the NTS (I67 in mouse myosin 5a (m5a)), whereas the converter arginine (R709 in mouse m5a) is conserved across many classes including myosins 2 and 5 [1]. In myosin 2 the repulsive interaction is maintained during the rigor-postrigor transition, whereas the interface is disrupted during lever priming (postrigor-prepowerstroke transition, Fig. 1A ). In line with this, earlier we found that the removal or inversion of the positive charges of the NTS lysine and the converter arginine (via the K84M and R704E mutations, respectively, in Dictyostelium discoideum (Dd) myosin 2) specifically affected the lever priming step and, in turn, ATP hydrolysis and Pi release [15].
Available crystal structures of chicken m5a [16] indicate that the NTS-converter interface undergoes changes that are markedly different from those seen in myosin 2 ( Fig. 1A ). In the rigor-like state (crystallized in the absence of nucleotide and actin), the I67 and R710 (equivalent to R709 of mouse m5a) side chains are in close proximity, similar to the corresponding lysine and arginine residues of myosin 2 ( Fig. 1A , Table S1). However, in contrast to myosin 2, these positions undergo a marked separation during the rigor-postrigor transition in m5a ( Fig. 1A , Table S1). M5a has not been crystallized in the prepowerstroke conformation, but it is highly likely that in this state the NTS and the converter exhibit similar separation to that seen in the myosin 2 prepowerstroke state. The finding that the NTS-converter separation occurs during different steps of the mechanochemical cycles of myosins 2 and 5 implies that this interface may play a different role in the energy transduction mechanisms of myosins from different classes. To test this hypothesis, we introduced a positive charge, characteristic of myosin 2, into the NTS of mouse m5a via the I67K mutation. Our comprehensive biochemical, rapid transient kinetic and ensemble and single-molecule motility analysis of wild-type (wt) and I67K m5a constructs revealed that the NTS-converter interface indeed plays a specific and important role in the mechanochemical coupling mechanism of m5a. Most prominently, the mutational alteration of this interface perturbed the strong-binding actomyosin interaction and abolished the actin-induced activation of ADP release. These changes resulted in slower and mechanically sensitized processive motility of mutant m5a molecules.
Results
Proteins
To investigate the effect of the alteration of the NTS-converter interface on the mechanochemical mechanism of m5a, we introduced the I67K point mutation into single- and double-headed constructs of mouse m5a. The term “head” refers to the MD plus a neck (lever) region (an elongated α-helix with attached calmodulins). The single-headed subfragment-1 (S1)-like m5aS1 construct contained the MD and the first two IQ motifs of the neck with bound calmodulins, whereas the double-headed heavy meromyosin (HMM)-like m5aHMM construct contained an N-terminal GFP, the MD, all six IQ motifs with bound calmodulins and the proximal part of the coiled-coil tail. We used m5aS1 for solution kinetic and m5aHMM for motility experiments.
I67K Mutant Retains Rapid ATP Binding and Hydrolysis but Forms an off-pathway Binding Intermediate
In line with earlier findings [9], [17], wt-m5aS1 showed a significant increase in steady-state tryptophan (Trp) fluorescence emission upon interacting with ATP or the non-hydrolyzable ATP analog adenylyl-imidodiphosphate (AMPPNP) ( Table 1 ). This signal change was earlier assigned to the ATP-sensitive tryptophan located in the so-called relay loop (W483 in m5a), which reports the postrigor-prepowerstroke transition coupled to ATP hydrolysis (these two steps are embedded in K 3 in Fig. 1B ) [8], [18]–[20]. Also in line with earlier results [9], we found that ADP and adenosine 5′-O-(3-thio)triphosphate (ATPγS) failed to induce a similar increase in Trp fluorescence, resulting from the inability of these ligands to induce the prepowerstroke conformation to a detectable extent ( Table 1 ). Upon interacting with various nucleotide ligands, I67K-m5aS1 showed similar Trp fluorescence changes to those of wt-m5aS1, suggesting that the mutant retained the capability of ATP binding and hydrolysis ( Table 1 ).
Table 1. Functional properties of myosin 5a constructsa.
Parameter | Method of determination | wt | I67K |
Steady-state ATPase activity | NADH assay | ||
Basal activity (s−1)b | 0.020±0.03 | 0.015±0.04 | |
Actin-activated k cat (s−1) | 9.9±0.8 | 1.8±0.4 | |
K actin (µM)c | 5.2±0.3 | 1.0±0.4 | |
K ATP (µM)d | 12±1 | 2.5±0.3 | |
Motility | |||
Actin gliding (nm•s−1)e | Actin gliding assay | 410±50 | 82±22 |
v max (nm•s−1) | TIRF assay | 410±30 | 250±40 |
K ATP (µM) | TIRF assay | 11±0.4 | 130±10 |
Trp fluorescence change on nucleotide binding (%) | Trp fluorescence | ||
ATP | 17±3 | 9±1 | |
AMPPNP | 12±1 | 13±3 | |
ATPγS | 0±1 | –1±1 | |
ADP | –1±1 | 1±2 | |
ATP binding and hydrolysis | |||
K 1 k 2 (µM−1s−1)f | Trp fluorescence | 1.3±0.2 | 1.3±0.2 |
k 3+ k –3 (s−1)f | Trp fluorescence | 270±60 | 760±50 |
k 3+ k –3 (s−1)g | Quenched-flow | >35 | >39 |
K 3 | Quenched-flow | 0.64±0.05 | 1.8±0.6 |
K 1’k 2’ (µM−1s−1)f | PA fluorescence, light scattering | 0.73±0.08 | 1.2±0.2 |
k 2’ (s−1)f | PA fluorescence, light scattering | >200 | >300 |
Pi release | MDCC-PBP fluorescence | ||
k 4 (s−1)h | 0.029±0.003 | 0.025±0.002 | |
k 4’ (s−1)i | ≥32 | ≥12 | |
A max (mol Pi/mol m5aS1)j | 0.99±0.01 | 0.90±0.02 | |
ADP interaction | |||
k 5 (s−1) | mdADP fluorescence | 2.4±0.1 | 4.3±0.6; 1.3±0.1k |
k 5’ (s−1) | PA fluorescence | 17±3 | 2.7±0.1 |
K 5’ (µM) | PA fluorescence | 3.7±0.8 | 1.0±0.3 |
Actin interaction | PA fluorescence | ||
k –6 (µM−1s−1) | 28±1l | 7.3±0.2 | |
k 6 (s−1) | 1.1×10−3l | (8.1±0.8)×10−3 | |
K 6 (µM) | 3.9×10−5l | 1.1×10−3 |
Solution kinetic data are for m5aS1 and motility data are for m5aHMM. Nomenclature of kinetic constants refers to Fig. 1B . All parameters were measured at 25°C. Mean ± SD values for two to four independent experiments are shown.
At 1 mM ATP.
Half-saturating actin concentration (at 1 mM ATP).
Half-saturating ATP concentration (at 10 µM actin).
At 1 mM ATP.
Results of exponential analysis are shown ( Fig. 2 ; rapid phase data for I67K-m5aS1). See also Fig. S1 for global fitting results on I67K-m5aS1.
Lower bounds set by maximal rate constant of rapid pre-steady state burst at 30 µM ATP.
From steady-state slopes recorded at 100 µM ATP.
Lower bounds set by maximal rate constant of rapid pre-steady state burst at 10 µM actin.
Maximal amplitude of rapid pre-steady state burst at 10 µM actin.
Rate constants of the rapid (40±3% amplitude) and slow phases of biphasic mdADP release.
From ref. [17].
The ATP interaction kinetics of m5aS1 were further assessed in Trp fluorescence stopped-flow experiments. Upon rapidly mixing wt-m5aS1 with excess ATP in pseudo-first-order conditions, single-exponential transients were recorded with observed rate constant (k obs) values increasing hyperbolically with ATP concentration ( Fig. 2A–B ). As described for various myosins [8], [21], this behavior originates from a multistep ATP binding mechanism in which an initial collision step (K 1 in Fig. 1B ) is followed by structural transitions associated with changes in Trp fluorescence. In the case of m5aS1, the K 1 and K 2 steps cannot be resolved kinetically [8], [17]. Thus, the initial slope and the maximal k obs of the fitted hyperbola will be determined by K 1 k 2 (the apparent second-order rate constant of ATP binding) and (k 3+ k –3), respectively ( Table 1 ) [8], [17].
In contrast to wt-m5aS1, biphasic Trp fluorescence transients were observed upon ATP binding to I67K-m5aS1 ( Fig. 2A–B ). The rapid phase k obs values of the mutant were generally higher than those of wt-m5aS1, but showed similar ATP concentration dependence ( Fig. 2B , Table 1 ). The slow phase k obs values of I67K-m5aS1 increased moderately with ATP concentration ( Fig. 2B inset). The amplitudes of the rapid and slow phases increased and decreased with ATP concentration, respectively, whereas the total amplitude showed early saturation indicating high overall ATP affinity ( Fig. 2C ). For reasons discussed in Text S1, we propose that the kinetic behavior of I67K-m5aS1 can be best explained by the formation of a reversibly ATP-bound off-pathway intermediate (M.ATP# in Fig. 1B ). We performed global fitting kinetic analysis to determine the kinetics of formation and dissociation of this intermediate (Fig. S1A–B, Table S2).
Upon ATP binding to acto-m5aS1, the initial collision step (K 1’ in Fig. 1B ) leads to a structural change (K 2’) that weakens the actin affinity of m5aS1 by 5–6 orders of magnitude and leads to rapid dissociation of m5aS1 from actin (K 8) [8], [9], [17]. We assessed these processes by monitoring changes in pyrene-labeled actin (PA) fluorescence and light scattering upon mixing acto-m5aS1 with excess ATP in the stopped-flow apparatus ( Fig. 2D ). In acto-wt-m5aS1, the k obs values of the recorded single-exponential PA fluorescence transients increased quasi-linearly in the examined ATP concentration range ( Fig. 2E ). In lack of a saturating tendency, only lower bounds of k 2’ could be determined, but the K 1’k 2’ value (the effective on-rate constant of ATP binding to acto-m5aS1) reflected in the slope of the plot was similar to that determined earlier ( Table 1 ) [8], [17]. In acto-I67K-m5aS1, biphasic PA fluorescence transients were observed ( Fig. 2D ). The k obs values of the rapid phase indicated slightly more rapid ATP binding kinetics compared to that of acto-wt-m5aS1 ( Fig. 2E ). The k obs and amplitude profiles of the slow phase were similar to those observed for I67K-m5aS1 Trp transients ( Fig. 2E–F ; cf. Fig. 2B–C ). We propose that the observed profiles of acto-I67K-m5aS1 reflect the formation of an off-pathway ATP binding intermediate (AM.ATP# in Fig. 1B , see Text S1) with a kinetic behavior similar to that of M.ATP#, as determined from global fitting kinetic analysis (Fig. S1C, Table S2). The formation of this intermediate also resulted in a significant y intercept of the plot shown in Fig. 2E , despite the high overall affinity of ATP binding to acto-I67K-m5aS1 reflected in the amplitude profiles ( Fig. 2F ).
Light scattering profiles closely followed the inverse of the PA fluorescence transients in all cases, indicating that the detachment of m5aS1 from actin (K 8 in Fig. 1B ) is rapid and occurs practically simultaneously with the K 2’ step.
We assessed the transient kinetic profile of the ATP hydrolysis step in the absence of actin (K 3 in Fig. 1B ) in quenched-flow experiments monitoring the cleavage of radioactively-labeled (γ-32P-) ATP upon mixing with m5aS1 in single-turnover and multiple-turnover conditions ( Fig. 3A ). In the biphasic profiles recorded in single-turnover experiments, the k obs of the rapid phase was limited by the kinetics of ATP binding (K 1 k 2) at the applied ATP and protein concentrations ( Fig. 3A main panel; cf. Fig. 2A–C , Fig. S1 and Table 1 , Table S2), whereas that of the slow phase was determined by the kinetics of Pi release (k 4; see below). The equilibrium constant of the hydrolysis step (K 3, calculated from the fractional amplitudes of the two phases as A fast/A slow) was increased by the I67K mutation ( Fig. 3A , Table 1 ). Multiple-turnover kinetic profiles of ATP hydrolysis of wt-m5aS1 and I67K-m5aS1 consisted of a rapid exponential burst and a linear steady-state phase ( Fig. 3A inset). The k obs of the burst was still limited by ATP binding (K 1 k 2) at the applied ATP concentration (30 µM) ( Fig. 3A inset; cf. Fig. 2A–C , Fig. S1 and Table 1 , Table S2), setting a lower bound for the effective rate constant of ATP hydrolysis (k 3+ k– 3, Table 1 ). K 3 values calculated from burst amplitudes (K 3 = B/(1-B) where B is the burst amplitude expressed in mol Pi/mol m5aS1) were in line with those determined in single-turnover experiments ( Fig. 3A inset and main panel, Table 1 ). The slope of the linear steady-state phase, representing the steady-state basal (actin-free) ATPase activity, appeared higher than that determined more robustly in Pi release and NADH-coupled steady-state experiments ( Fig. 3A inset; see below). Taken together, quenched-flow experiments showed that I67K-m5aS1 retains rapid ATP hydrolysis, and the mutation facilitates the hydrolysis step (increases the K 3 equilibrium constant; Table 1 ).
I67K Mutant Retains Marked Activation of Pi Release by Actin
The kinetics of the release of Pi liberated from ATP by m5aS1 was monitored using a fluorescently-labeled Pi binding protein (MDCC-PBP) [22]. On mixing 0.5 µM wt-m5aS1 or I67K-m5aS1 with 100 µM ATP in the stopped-flow apparatus, no burst was observed before the linear steady-state phase of the reaction, indicating that Pi release (k 4) is rate-limiting in both constructs in the absence of actin ( Table 1 ). In the presence of 10 µM actin, the linear steady-state phase was preceded by an exponential burst whose k obs and amplitude showed saturation with increasing ATP concentration ( Fig. 3B–C ). Maximal k obs values were about three times lower in I67K-m5aS1 than in wt-m5aS1, whereas the maximal amplitudes were close to 1 mol Pi/mol m5aS1 in both constructs ( Fig. 3B–C , Table 1 ). The data indicate that, although actin-activated Pi release (k 4’) is slowed down by the I67K mutation, ATP hydrolysis (k 3+ k –3) and Pi release (k 4’) remain rapid and non-rate-limiting in the presence of actin ( Table 1 ).
I67K Mutation Abolishes Activation of ADP Release by Actin
ADP release (k 5’) from and ADP affinity (1/K 5’) of acto-m5aS1 were monitored in PA fluorescence stopped-flow experiments via rapidly mixing a pre-mixture of PA-m5aS1 plus a range of ADP concentrations with excess ATP ( Fig. 3D ). In the biphasic PA fluorescence transients obtained in these conditions, the rapid phase represented ATP-induced dissociation of the ADP-free PA-m5aS1 fraction, whereas the slow phase originated from the PA-m5aS1 fraction that had initially bound ADP [17]. In the latter fraction, ADP release (k 5’) limited the kinetics of the subsequent, ATP-induced dissociation of PA-m5aS1 (K 1’k 2’). The ADP release rate constants (k 5’), reflected in the k obs values of the slow phase of the transients ( Fig. 3D inset), were compared to k obs values of 3'-(N-methylanthraniloyl)-2'-deoxy-ADP (mdADP) fluorescence transients recorded on rapidly mixing m5aS1.mdADP complexes with excess ATP in the absence of actin ( Table 1 ). The data indicated that the I67K mutation abolished the 7-fold activation of ADP release by actin, characteristic of wt-m5aS1 ( Table 1 ). The ADP concentration dependence of the fractional amplitudes of the slow phase of PA fluorescence transients indicated that the high ADP affinity of acto-wt-m5aS1 (1/K 5’) was further elevated by the I67K mutation ( Fig. 3D main panel, Table 1 ).
I67K Mutant Exhibits Slowed ATPase Activity and Retains High Steady-state Actin Attachment Ratio
As measured by an NADH-linked assay, the maximal actin-activated steady-state ATPase activity of wt-m5aS1 (k cat) was slowed down by about 6 times by the I67K mutation ( Fig. 4A , Table 1 ), in parallel with the slowing of the rate constant of ADP release from acto-m5aS1 (k 5’; Fig. 3D inset, Table 1 ). Ultracentrifugation-based acto-m5aS1 cosedimentation experiments performed in the presence of 15 mM ATP revealed that the high apparent actin affinity of wt-m5aS1 during steady-state ATPase cycling (originating from rate-limiting ADP release (k 5’) and the high steady-state abundance of the acto-m5aS1.ADP ternary complex ( Fig. 1B ) [8], [17]), was further increased by the I67K mutation ( Fig. 4B inset). Steady-state PA fluorescence intensities recorded upon titration with m5aS1 in the absence and presence of ATP indicated that strong actin binding by nucleotide-free m5aS1 was retained, and the apparent actin affinity during steady-state ATPase cycling was increased by the I67K mutation ( Fig. 4B main panel). The data indicate that, similarly to wt-m5aS1, I67K-m5aS1 molecules spend a large proportion of their enzymatic cycle time in strongly actin-bound states (i.e. their duty ratio is high).
I67K Mutation Interferes with Strong Actin Binding
We determined the kinetics of the binding of nucleotide-free m5aS1 to actin (k –6) by mixing m5aS1 (0.1–0.65 µM) with a 5-fold molar excess of PA in the stopped-flow apparatus. The PA concentration dependence of the k obs of the transients revealed that the I67K mutation caused a 4-fold reduction in the rate constant of actin binding (k –6; Table 1 ). Chasing experiments performed by mixing PA-m5aS1 complexes with excess unlabeled actin revealed that the dissociation of nucleotide-free m5aS1 from actin (k 6) was accelerated 7-fold by the mutation, resulting in a 28-fold reduction in the actin binding affinity (1/K 6; Table 1 ).
I67K Mutation Slows Down and Sensitizes Processive Motility
We assessed the effect of the I67K mutation on the motile properties of m5aHMM by recording the gliding of fluorescently-labeled actin filaments over m5aHMM-coated surfaces, and also by observing the movement of single GFP-labeled m5aHMM molecules on fixed actin filaments via TIRF (total internal reflection fluorescence) microscopy. In the applied conditions of the gliding assay (0.5–1 µM incubation concentration of m5aHMM), actin filaments were propelled by a multitude of m5aHMM molecules, possibly influencing each other’s actin translocating activity via mechanical linkage. In contrast, the TIRF measurement allowed the recording of the motility of individual m5aHMM molecules unaffected by other motors in the solution. In line with the reduced ADP release rate constant (k 5’) and actin-activated ATPase activity (k cat) of I67K-m5aS1 ( Fig. 3D inset, 4A, Table 1 ), the motile speed of I67K-m5aHMM was significantly reduced compared to that of wt-m5aHMM, as measured by both types of motility assay ( Fig. 5A , Table 1 ). Importantly, however, the actin gliding motile speed of I67K-m5aHMM was 3-fold reduced compared to the motile speed of single I67K-m5aHMM molecules, whereas only a slight reduction was observed in wt-m5aHMM ( Fig. 5A ). This finding indicates that the motility of mutant m5aHMM molecules was more strongly affected by mechanical drag exerted by multiple motor molecules bound to the same actin filament. The mean processive run length of single m5aHMM molecules was unaffected by the I67K mutation at 1 mM ATP ( Fig. 5B and C inset). However, the run length of I67K-5aHMM was significantly reduced at lower ATP concentrations, unlike that of wt-m5aHMM ( Fig. 5B and C inset). In addition, the motile speed of I67K-m5aHMM molecules reached half-saturation at a markedly higher ATP concentration (K ATP) than that of wt-m5aHMM ( Fig. 5C , Table 1 ).
Discussion
Allosteric Effects of the Alteration of the NTS-converter Interface of m5a
The present study revealed that the alteration of the interface between the NTS and converter subdomains of m5a exerts marked and specific allosteric effects on the actin and ATP binding sites of the molecule. We found that the I67K mutation perturbed the strong-binding interaction of nucleotide-free m5a with actin, changed the mechanism of ATP binding, facilitated the ATP hydrolysis step, slightly slowed down actin-activated Pi release and abolished the actin-induced activation of ADP release ( Fig. 1B , Table 1 ). The capability of processive mechanical stepping along actin was retained by mutant m5a, but its motility became slower and more sensitive to mechanical conditions ( Fig. 5 , Table 1 ). Below we discuss how these findings relate to and further our understanding of the structural and kinetic mechanism of actomyosin motility.
Perturbation of the Strong-binding Actomyosin Interaction
Based on structural and kinetic considerations, the actin- and nucleotide-free (rigor-like) crystal structure of m5a (and those of molluscan muscle myosin 2 isoforms) are thought to closely resemble the myosin head conformation adopted in the strongly actin-bound (rigor) complex ( Fig. 1A ) [23]–[25]. This structure plays an important energetic role in the motile mechanism, as the formation of the strong-binding actomyosin interaction drives product release and the associated powerstroke [13].
The I67 and R710 side chains of chicken m5a (the latter being equivalent to R709 of mouse m5a) are in close juxtaposition in the rigor-like structure ( Fig. 1A , Table S1). This arrangement suggests that the I67K mutation introduces significant charge repulsion between the side chains, similar to that observed for wt myosin 2 isoforms ( Fig. 1A , Table S1). In line with this, we found that the strong-binding actin interaction (K 6 in Fig. 1B ) was significantly perturbed in I67K-m5aS1 ( Table 1 ). Notably, in a crystallographically identified weakly ADP-bound m5a intermediate, the NTS-converter interface was similar to that in the rigor-like state (Table S1) [16]. Therefore the I67K mutation is likely to destabilize also this “weak-ADP” structure, providing a possible structural explanation for the mutation-induced abolishment of actin-activation of ADP release (see also below).
Influence on ATP Binding Pathways
The binding of ATP to strongly actin-bound (rigor) m5aS1 weakens the actomyosin interaction by 5–6 orders of magnitude and leads to the formation of the actin-detached, strongly nucleotide-bound postrigor state ( Fig. 1A ; steps K 1’, K 2’ and K 8 in Fig. 1B ) [8], [9] [17]. We found that the I67K mutation left the main-flux ATP binding process largely unaffected, but induced the formation of a weakly ATP-bound off-pathway binding intermediate, which had similar kinetic properties in the absence and presence of actin (M.ATP# and AM.ATP# in Fig. 1B ; Fig. 2 , Fig. S1, Table S2, Text S1). These findings suggest that the NTS-converter interface exerts a subtle allosteric influence on the ATP binding pocket, and this influence is similar in actin-free (rigor-like) and actin-bound (rigor) m5a structures.
Our steady-state kinetic simulations based on the experimentally determined kinetic parameters of I67K-m5aS1 ( Table 1 , Table S2) indicated that, at saturating actin and ATP concentrations (20 µM and 5 mM, respectively), 19% of I67K-m5aS1 molecules populate the AM.ATP# state during steady-state ATPase cycling, while M.ATP# is insignificantly populated. The off-pathway ATP binding process exerts a slight (1.3-fold) slowing effect on the steady-state ATPase rate, but does not affect the high steady-state actin attachment of I67K-m5aS1 (close to 100%, cf. Fig. 4B inset).
Earlier we found that, in Dd myosin 2, the removal of the class-specific charge repulsion from the NTS-converter interface (K84-R704 interaction) did not affect the nucleotide binding process [15], in contrast to the effect of the introduction of this interaction into m5a in the present study ( Fig. 2A–F ). These findings are in line with structural data showing that the spatial separation of the affected interacting side chains occurs during the rigor-postrigor transition in m5a, whereas in myosin 2 the separation occurs later during the lever priming step (postrigor-prepowerstroke transition; Fig. 1A , Table S1).
The effect of the I67K m5a mutation on ATP binding is also different from those of previously-characterized m5a mutations located in the conserved switch-2 loop of the ATP binding pocket. The G440A mutation inhibited the ATP-induced weakening of the actomyosin interaction [9], [26], whereas mutations of the class-specific Y439 residue left the ATP binding process largely unaffected [17].
Slowing of the Rate-limiting Step
During processive stepping along the actin filament, a double-headed m5a holoenzyme must maintain continuous attachment to actin, i.e. at least one head must be actin-bound at any time during the run. Therefore, a high duty ratio (a high fraction of the ATPase cycle time of a given head spent in strongly actin-bound states) is a prerequisite for processivity. In the ATPase cycle of wt m5a, the ATP-induced dissociation of the myosin head from actin (steps K 1’, K 2’ and K 8 in Fig. 1B ) is followed by rapid steps of actin-detached ATP hydrolysis (K 3), rebinding to actin (K 9) and actin-activated Pi release (k 4’) [8], [17]. Thus, the subsequent release of ADP from actomyosin (k 5’) will be rate-limiting in the overall enzymatic cycle. This kinetic pattern results in high steady-state abundance of the strongly-bound actomyosin.ADP complex, and thus it is the key kinetic determinant of the high duty ratio of wt m5a (≥70% for a single head) [8], [17]. The release of ADP leads to the transient formation of the nucleotide-free actomyosin rigor complex. The myosin head then rapidly binds a new ATP molecule and dissociates from actin. The results of the present study showed that ADP release (k 5’) and actin-activated steady-state ATPase activity (k cat) were slowed down to a similar extent by the I67K mutation (6–7 times), indicating that ADP release remained rate-limiting also in the mutant enzyme ( Fig. 3D , 4A , Table 1 ). Accordingly, the high duty ratio of wt-m5aS1 was retained (or even elevated) in the mutant construct ( Fig. 4B ). The slowing of ADP release resulted from the mutation-induced abolishment of the actin-induced kinetic activation of this step ( Table 1 ).
It was shown earlier that the kinetics of actin-activated ADP release is limited by a structural transition of the nucleotide binding pocket occurring in the actomyosin.ADP state, prior to ADP release [27]. The mechanical load dependence of this step could ensure that a m5a head generating force is inhibited from releasing ADP until the working stroke is complete. This transition may well be affected by the I67K mutation, similar to earlier characterized mutations of the class-specific Y439 residue of the switch-2 loop of m5a [17]. The observation that the mutations abolished the actin-induced activation of ADP release is consistent with this idea.
Sensitization of Processive Motility
While I67K-m5aHMM retained the capability of processive motion along actin filaments ( Fig. 5B–C ), the abolishment of the actin-activation of ADP release by the mutation ( Fig. 3D ) resulted in significant slowing of motile speeds ( Fig. 5A,C ). Importantly, the slowing effect was markedly stronger in the ensemble motility arrangement (when actin filaments were propelled by multiple m5aHMM molecules exerting a mechanical drag on each other) than that observed for the independent motion of single m5aHMM molecules along actin ( Fig. 5A,C , Table 1 ). These findings imply that the unloaded motile speed was slowed and the force sensitivity was enhanced by the mutation. However, it should be noted that other factors may also influence the observed phenomena. The higher overall actin affinity of I67K-m5a during steady-state ATPase cycling ( Fig. 4B ) is likely to pose an additional drag on actin filaments, which may reduce the motile speed in the ensemble assay, as demonstrated in frictional loading assays using actin-binding proteins [28]–[30]. In addition, being located at the base of the lever, the I67K mutation may influence the stiffness of the head, leading to a lower isometric force. Interestingly, the observed difference between ensemble and single-molecule behavior was absent in the previously-characterized Y439A (switch-2) mutant of m5a, despite the similarity of Y439A and I67K mutations in abolishing the actin-induced activation of ADP release ( Fig. 3D ) [17].
In summary, our data revealed that the perturbation of the NTS-converter interface of m5a allosterically affects ATP binding, hydrolysis and product release, resulting in slower and mechanically sensitized processive motility. These results highlight that the efficient functioning of myosins requires fine-tuned allosteric linkages shaped by widely differing physiological demands.
Materials and Methods
Proteins
Cloning, expression and purification of wt-m5aS1 and wt-m5aHMM (with heavy chains comprising the first 820 and 1091 amino acid residues of m5a, respectively) were described in [17] and [31], [32], respectively. I67K point mutant m5aS1 and GFP-m5aHMM clones were constructed via QuikChange (Stratagene) using a complementary oligonucleotide pair with a coding-strand sequence of CCTCACTTACGGAACCCTGACAAGCTTGTTGGAGAAAATGACC (mutant triplet underlined). All DNA constructs were verified by DNA sequencing.
Actin was purified as in [33] and pyrene-labeled as in [34].
Solution Kinetic and Spectroscopic Experiments
All experiments were performed at 25°C in a buffer comprising 20 mM HEPES (pH 7.0), 50 mM KCl, 5 mM MgCl2, 0.1 mM EGTA, and 1 mM DTT. In transient kinetic experiments the volume mixing ratio was 1∶1 and post-mix concentrations are stated unless otherwise indicated. In the experiments of Fig. 3B–C , MDCC-PBP fluorescence values were converted to Pi concentration based on calibration described in [35]. Cosedimentation assays ( Fig. 4B inset) were carried out as in [36]. Steady-state Trp fluorescence emission spectra were recorded as in [36]. Other details of sample preparation, assay components, optical setups and data analysis were described in [17]. Global fitting kinetic analysis and steady-state kinetic simulations were performed using KinTek Explorer 3.0 software [37].
In vitro Motility and TIRF Microscopic Experiments
In vitro actin gliding and TIRF motility assays were performed as described in [17], [38], [39]. All experiments were performed at 25°C controlled by an enclose box in an OLYMPUS IX70 microscope (Olympus, Tokyo, Japan) [17], [31] in a buffer used in [17].
Supporting Information
Funding Statement
This work was supported by National Institutes of Health K99/R00 Career grant (R00HL089350) to T.S.; and TÁMOP Grant (4.2.1/B-09/1/KMR-2010-0003), the Human Frontier Science Program (RGY0072/2010) and the “Momentum” Program of the Hungarian Academy of Sciences (LP2011-006/2011) to M.K. M.K. is a Bolyai Fellow of the Hungarian Academy of Sciences. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
References
- 1.Sellers JR (1999) Myosins. New York: Oxford University Press.
- 2. De La Cruz EM, Ostap EM (2004) Relating biochemistry and function in the myosin superfamily. Curr Opin Cell Biol 16: 61–67. [DOI] [PubMed] [Google Scholar]
- 3.Coluccio LM (2008) Myosins: A Superfamily of Molecular Motors. Dordrecht: Springer.
- 4. Geeves MA, Holmes KC (2005) The molecular mechanism of muscle contraction. Adv Protein Chem 71: 161–193. [DOI] [PubMed] [Google Scholar]
- 5. Konrad M, Goody RS (1982) Kinetic and thermodynamic properties of the ternary complex between F-actin, myosin subfragment 1 and adenosine 5′-[beta, gamma-imido]triphosphate. Eur J Biochem 128: 547–555. [DOI] [PubMed] [Google Scholar]
- 6. White HD, Belknap B, Webb MR (1997) Kinetics of nucleoside triphosphate cleavage and phosphate release steps by associated rabbit skeletal actomyosin, measured using a novel fluorescent probe for phosphate. Biochemistry 36: 11828–11836. [DOI] [PubMed] [Google Scholar]
- 7. Takacs B, O’Neall-Hennessey E, Hetenyi C, Kardos J, Szent-Gyorgyi AG, et al. (2011) Myosin cleft closure determines the energetics of the actomyosin interaction. Faseb J 25: 111–121. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 8. De La Cruz EM, Wells AL, Rosenfeld SS, Ostap EM, Sweeney HL (1999) The kinetic mechanism of myosin V. Proc Natl Acad Sci U S A. 96: 13726–13731. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 9. Yengo CM, De la Cruz EM, Safer D, Ostap EM, Sweeney HL (2002) Kinetic characterization of the weak binding states of myosin V. Biochemistry. 41: 8508–8517. [DOI] [PubMed] [Google Scholar]
- 10. Taylor EW (1991) Kinetic studies on the association and dissociation of myosin subfragment 1 and actin. J Biol Chem 266: 294–302. [PubMed] [Google Scholar]
- 11. Fisher AJ, Smith CA, Thoden JB, Smith R, Sutoh K, et al. (1995) X-ray structures of the myosin motor domain of Dictyostelium discoideum complexed with MgADP.BeFx and MgADP.AlF4. Biochemistry 34: 8960–8972. [DOI] [PubMed] [Google Scholar]
- 12. Houdusse A, Szent-Gyorgyi AG, Cohen C (2000) Three conformational states of scallop myosin S1. Proc Natl Acad Sci U S A 97: 11238–11243. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 13. Malnasi-Csizmadia A, Kovacs M (2010) Emerging complex pathways of the actomyosin powerstroke. Trends Biochem Sci 35: 684–690. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 14. Varkuti BH, Yang Z, Kintses B, Erdelyi P, Bardos-Nagy I, et al. (2012) A novel actin binding site of myosin required for effective muscle contraction. Nat Struct Mol Biol 19: 299–306. [DOI] [PubMed] [Google Scholar]
- 15. Malnasi-Csizmadia A, Toth J, Pearson DS, Hetenyi C, Nyitray L, et al. (2007) Selective perturbation of the myosin recovery stroke by point mutations at the base of the lever arm affects ATP hydrolysis and phosphate release. J Biol Chem 282: 17658–17664. [DOI] [PubMed] [Google Scholar]
- 16. Coureux PD, Sweeney HL, Houdusse A (2004) Three myosin V structures delineate essential features of chemo-mechanical transduction. Embo J 23: 4527–4537. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 17. Nagy NT, Sakamoto T, Takacs B, Gyimesi M, Hazai E, et al. (2010) Functional adaptation of the switch-2 nucleotide sensor enables rapid processive translocation by myosin-5. Faseb J 24: 4480–4490. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 18. Malnasi-Csizmadia A, Woolley RJ, Bagshaw CR (2000) Resolution of conformational states of Dictyostelium myosin II motor domain using tryptophan (W501) mutants: implications for the open-closed transition identified by crystallography. Biochemistry 39: 16135–16146. [DOI] [PubMed] [Google Scholar]
- 19. Malnasi-Csizmadia A, Kovacs M, Woolley RJ, Botchway SW, Bagshaw CR (2001) The dynamics of the relay loop tryptophan residue in the Dictyostelium myosin motor domain and the origin of spectroscopic signals. J Biol Chem 276: 19483–19490. [DOI] [PubMed] [Google Scholar]
- 20. Malnasi-Csizmadia A, Pearson DS, Kovacs M, Woolley RJ, Geeves MA, et al. (2001) Kinetic resolution of a conformational transition and the ATP hydrolysis step using relaxation methods with a Dictyostelium myosin II mutant containing a single tryptophan residue. Biochemistry 40: 12727–12737. [DOI] [PubMed] [Google Scholar]
- 21. Bagshaw CR, Eccleston JF, Eckstein F, Goody RS, Gutfreund H, et al. (1974) The magnesium ion-dependent adenosine triphosphatase of myosin. Two-step processes of adenosine triphosphate association and adenosine diphosphate dissociation. Biochem J 141: 351–364. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 22. Brune M, Hunter JL, Corrie JE, Webb MR (1994) Direct, real-time measurement of rapid inorganic phosphate release using a novel fluorescent probe and its application to actomyosin subfragment 1 ATPase. Biochemistry 33: 8262–8271. [DOI] [PubMed] [Google Scholar]
- 23. Coureux PD, Wells AL, Menetrey J, Yengo CM, Morris CA, et al. (2003) A structural state of the myosin V motor without bound nucleotide. Nature 425: 419–423. [DOI] [PubMed] [Google Scholar]
- 24. Sweeney HL, Houdusse A (2004) The motor mechanism of myosin V: insights for muscle contraction. Philos Trans R Soc Lond B Biol Sci 359: 1829–1841. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 25. Yang Y, Gourinath S, Kovacs M, Nyitray L, Reutzel R, et al. (2007) Rigor-like structures from muscle myosins reveal key mechanical elements in the transduction pathways of this allosteric motor. Structure 15: 553–564. [DOI] [PubMed] [Google Scholar]
- 26. Trivedi DV, David C, Jacobs DJ, Yengo CM (2012) Switch II mutants reveal coupling between the nucleotide- and actin-binding regions in myosin V. Biophys J. 102: 2545–2555. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 27. Jacobs DJ, Trivedi D, David C, Yengo CM (2011) Kinetics and thermodynamics of the rate-limiting conformational change in the actomyosin V mechanochemical cycle. J Mol Biol 407: 716–730. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 28. Warshaw DM, Desrosiers JM, Work SS, Trybus KM (1990) Smooth muscle myosin cross-bridge interactions modulate actin filament sliding velocity in vitro. J Cell Biol 111: 453–463. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 29. Bing W, Knott A, Marston SB (2000) A simple method for measuring the relative force exerted by myosin on actin filaments in the in vitro motility assay: evidence that tropomyosin and troponin increase force in single thin filaments. Biochem J 350 Pt 3: 693–699. [PMC free article] [PubMed] [Google Scholar]
- 30. Greenberg MJ, Moore JR (2010) The molecular basis of frictional loads in the in vitro motility assay with applications to the study of the loaded mechanochemistry of molecular motors. Cytoskeleton (Hoboken) 67: 273–285. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 31. Sakamoto T, Wang F, Schmitz S, Xu Y, Xu Q, et al. (2003) Neck length and processivity of myosin V. J Biol Chem. 278: 29201–29207. [DOI] [PubMed] [Google Scholar]
- 32. Snyder GE, Sakamoto T, Hammer JA, 3rd, Sellers JR, Selvin PR (2004) Nanometer localization of single green fluorescent proteins: evidence that myosin V walks hand-over-hand via telemark configuration. Biophys J 87: 1776–1783. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 33. Spudich JA, Watt S (1971) The regulation of rabbit skeletal muscle contraction. I. Biochemical studies of the interaction of the tropomyosin-troponin complex with actin and the proteolytic fragments of myosin. J Biol Chem 246: 4866–4871. [PubMed] [Google Scholar]
- 34. Cooper JA, Walker SB, Pollard TD (1983) Pyrene actin: documentation of the validity of a sensitive assay for actin polymerization. J Muscle Res Cell Motil 4: 253–262. [DOI] [PubMed] [Google Scholar]
- 35. Gyimesi M, Sarlos K, Kovacs M (2010) Processive translocation mechanism of the human Bloom’s syndrome helicase along single-stranded DNA. Nucleic Acids Res 38: 4404–4414. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 36. Takacs B, Billington N, Gyimesi M, Kintses B, Malnasi-Csizmadia A, et al. (2010) Myosin complexed with ADP and blebbistatin reversibly adopts a conformation resembling the start point of the working stroke. Proc Natl Acad Sci U S A 107: 6799–6804. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 37. Johnson KA, Simpson ZB, Blom T (2009) Global kinetic explorer: a new computer program for dynamic simulation and fitting of kinetic data. Anal Biochem 387: 20–29. [DOI] [PubMed] [Google Scholar]
- 38. Yildiz A, Forkey JN, McKinney SA, Ha T, Goldman YE, et al. (2003) Myosin V walks hand-over-hand: single fluorophore imaging with 1.5-nm localization. Science 300: 2061–2065. [DOI] [PubMed] [Google Scholar]
- 39. Sakamoto T, Yildez A, Selvin PR, Sellers JR (2005) Step-size is determined by neck length in myosin V. Biochemistry. 44: 16203–16210. [DOI] [PubMed] [Google Scholar]
- 40. Geeves MA, Jeffries TE (1988) The effect of nucleotide upon a specific isomerization of actomyosin subfragment 1. Biochem J 256: 41–46. [DOI] [PMC free article] [PubMed] [Google Scholar]
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