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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2013 Apr 10;69(Pt 5):o693. doi: 10.1107/S1600536813009215

3-(4-Methoxybenzyl)-1,5-benzo­thiazepin-4(5H)-one

R Selvakumar a, M Bakthadoss a,b,, S Vijayakumar c, S Murugavel d,*
PMCID: PMC3648230  PMID: 23723850

Abstract

In the title compound, C17H15NO2S, the thia­zepine ring adopts a slightly distorted twist-boat conformation. The dihedral angle between the mean plane of the benzo­thia­zepin ring system and the benzene ring is 65.7 (1)°. In the crystal, pairs of N—H⋯O hydrogen bonds link inversion-related mol­ecules into dimers, generating R22(8) ring motifs. These dimers are further linked by C—H⋯π and π–π inter­actions [inter-centroid distance between the benzene rings of the benzo­thia­zepine unit = 3.656 (3) Å] into a three-dimensional supra­molecular network.

Related literature  

For background to the biology of thia­zepin derivatives and for a related structure, see: Bakthadoss et al. (2013). For ring-puckering parameters, see: Cremer & Pople (1975).graphic file with name e-69-0o693-scheme1.jpg

Experimental  

Crystal data  

  • C17H15NO2S

  • M r = 297.36

  • Triclinic, Inline graphic

  • a = 7.678 (5) Å

  • b = 9.612 (5) Å

  • c = 10.860 (5) Å

  • α = 77.208 (5)°

  • β = 74.117 (4)°

  • γ = 81.522 (5)°

  • V = 748.5 (7) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.22 mm−1

  • T = 293 K

  • 0.23 × 0.21 × 0.15 mm

Data collection  

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.951, T max = 0.968

  • 18449 measured reflections

  • 5363 independent reflections

  • 3676 reflections with I > 2σ(I)

  • R int = 0.027

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.045

  • wR(F 2) = 0.134

  • S = 1.05

  • 5363 reflections

  • 191 parameters

  • H-atom parameters constrained

  • Δρmax = 0.28 e Å−3

  • Δρmin = −0.33 e Å−3

Data collection: APEX2 (Bruker, 2004); cell refinement: APEX2 and SAINT (Bruker, 2004); data reduction: SAINT and XPREP (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813009215/sj5315sup1.cif

e-69-0o693-sup1.cif (24.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813009215/sj5315Isup2.hkl

e-69-0o693-Isup2.hkl (257.3KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813009215/sj5315Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg is the centroid of the C3–C7 benzene ring.

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1A⋯O1i 0.86 2.02 2.860 (2) 167
C17—H17BCg ii 0.96 2.96 3.561 (3) 122

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors thank Dr Babu Vargheese, SAIF, IIT, Madras, India, for his help with the data collection.

supplementary crystallographic information

Comment

The background to the biology of thiazepin derivatives and a related structure have been described recently (Bakthadoss et al., 2013). In view of this biological importance, the crystal structure of the title compound has been carried out and the results are presented here.

Fig. 1. shows a displacement ellipsoid plot of (I), with the atom numbering scheme. The seven membered thiazepine ring (N1/S1/C1/C2/C7/C8/C9) adopts slightly distorted twist-boat conformation as indicated by puckering parameters (Cremer & Pople, 1975) QT = 0.9884 (11) Å, φ2 = 357.9 (1)° and φ3 = 355.6 (3)°. The dihedral angle between the benzothiazepin ring system and the benzene ring is 65.7 (1) (1)°. The atom O1 deviates by -0.458 (1) Å from the least-squares plane of the thiazepin ring. The sum of angles at N1 atom of the thiazepin ring (359.90) is in accordance with sp2 hybridization. The geometric parameters of the title molecule agree well with those reported for a similar structure (Bakthadoss et al., 2013).

In the crystal, molecules are linked by N1—H1A···O1 hydrogen bonds into cylic centrosymmetric R22(8) dimers (Fig. 2 and Table 1). These dimers are further linked by C17—H17B···Cgii (Table 1; Symmetry code:(ii) = 1 + x, 1 + y, z) hydrogen bonds and π—π interactions between benzothiazepine benzene rings with Cg···Cgiii = 3.656 (3) Å (Symmetry code:(iii) = -x, 1 - y, 1 - z) forming a three-dimensional supramolecular network (Fig. 3; Cg is the centroid of the C2–C7 benzene ring).

Experimental

A mixture of (Z)-methyl 2-(bromomethyl)-3-(4-methoxyphenyl)acrylate 2 mmol) and o-aminothiophenol (2 mmol) in the presence of potassium tert-butoxide (4.8 mmol) in dry THF (10 ml) was stirred at room temperature for 1 h. After the completion of the reaction as indicated by TLC, the reaction mixture was concentrated and the resulting crude mass was diluted with water (20 ml) and extracted with ethyl acetate (3 x 20 ml). The organic layer was washed with brine (2 x 20 ml) and dried over anhydrous sodium sulfate. It was then concentrated to successfully provide the crude final product ((Z)-3-(4-methoxybenzyl)benzo[b][1,4]thiazepin-4(5H)-one). This was purified by column chromatography on silica gel with ethylacetate/hexane 1:19 as eluent to afford the title compound in good yield (45%). Single crystals suitable for X-ray diffraction were obtained by slow evaporation of an ethylacetate solution at room temperature.

Refinement

All the H atoms were positioned geometrically and constrained to ride on their parent atom with C—H = 0.93–0.97 Å and N—H = 0.86 Å, and with Uiso(H)=1.5Ueq for methyl H atoms and 1.2Ueq(C) for other H atoms.

Figures

Fig. 1.

Fig. 1.

Molecular structure of the title compound showing displacement ellipsoids at the 30% probability level. H atoms are presented as a small spheres of arbitrary radii.

Fig. 2.

Fig. 2.

Part of the crystal structure of the title compound showing N—H···O intermolecular hydrogen bonds (dotted lines) generating an R22(8) centrosymmetric dimer. [Symmetry code: (i) -x, 1 - y, -z]. Hydrogen atoms not included in hydrogen bonding are omitted for clarity.

Fig. 3.

Fig. 3.

View of three-dimensional supramolecular network. The N—H···O, C—H···π and π—π interactions are shown as blue, red and green dashed lines, respectively. Cg is the centroid of the (C2···C7) benzene ring.[Symmetry code: (i) -x, 1 - y, -z; (ii) 1 + x, 1 + y, z; (iii) -x, 1 - y, 1 - z]. Hydrogen atoms not included in hydrogen bonding are omitted for clarity.

Crystal data

C17H15NO2S Z = 2
Mr = 297.36 F(000) = 312
Triclinic, P1 Dx = 1.319 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 7.678 (5) Å Cell parameters from 5471 reflections
b = 9.612 (5) Å θ = 2.0–32.6°
c = 10.860 (5) Å µ = 0.22 mm1
α = 77.208 (5)° T = 293 K
β = 74.117 (4)° Block, colourless
γ = 81.522 (5)° 0.23 × 0.21 × 0.15 mm
V = 748.5 (7) Å3

Data collection

Bruker APEXII CCD diffractometer 5363 independent reflections
Radiation source: fine-focus sealed tube 3676 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.027
Detector resolution: 10.0 pixels mm-1 θmax = 32.6°, θmin = 2.0°
ω scans h = −11→11
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) k = −14→14
Tmin = 0.951, Tmax = 0.968 l = −15→16
18449 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.134 H-atom parameters constrained
S = 1.05 w = 1/[σ2(Fo2) + (0.0608P)2 + 0.1157P] where P = (Fo2 + 2Fc2)/3
5363 reflections (Δ/σ)max = 0.002
191 parameters Δρmax = 0.28 e Å3
0 restraints Δρmin = −0.33 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.42839 (17) 0.53284 (13) 0.19547 (13) 0.0389 (3)
H1 0.5174 0.5738 0.2152 0.047*
C2 0.18042 (19) 0.35576 (13) 0.34697 (13) 0.0404 (3)
C3 0.1350 (2) 0.29642 (16) 0.47950 (15) 0.0552 (4)
H3 0.2268 0.2590 0.5217 0.066*
C4 −0.0434 (3) 0.29249 (19) 0.54865 (16) 0.0639 (5)
H4 −0.0720 0.2511 0.6368 0.077*
C5 −0.1794 (2) 0.34965 (18) 0.48779 (16) 0.0595 (4)
H5 −0.3004 0.3466 0.5347 0.071*
C6 −0.1378 (2) 0.41157 (16) 0.35764 (14) 0.0475 (3)
H6 −0.2307 0.4514 0.3172 0.057*
C7 0.04227 (17) 0.41513 (13) 0.28606 (12) 0.0366 (3)
C8 0.19209 (16) 0.56421 (13) 0.07296 (12) 0.0344 (2)
C9 0.32623 (15) 0.61867 (13) 0.12345 (11) 0.0336 (2)
C10 0.34837 (18) 0.77722 (14) 0.07485 (14) 0.0415 (3)
H10A 0.3754 0.7968 −0.0196 0.050*
H10B 0.2336 0.8310 0.1066 0.050*
C11 0.49498 (17) 0.83050 (13) 0.11561 (13) 0.0377 (3)
C12 0.45462 (19) 0.90507 (15) 0.21596 (14) 0.0452 (3)
H12 0.3338 0.9228 0.2601 0.054*
C13 0.5907 (2) 0.95475 (16) 0.25307 (15) 0.0504 (3)
H13 0.5607 1.0052 0.3210 0.060*
C14 0.76966 (19) 0.92861 (14) 0.18852 (15) 0.0456 (3)
C15 0.81273 (19) 0.85446 (15) 0.08668 (16) 0.0497 (3)
H15 0.9335 0.8372 0.0423 0.060*
C16 0.67642 (19) 0.80638 (15) 0.05125 (15) 0.0462 (3)
H16 0.7066 0.7567 −0.0172 0.055*
C17 0.8784 (3) 1.0769 (2) 0.2951 (3) 0.0859 (7)
H17A 0.8026 1.1564 0.2609 0.129*
H17B 0.9907 1.1094 0.2953 0.129*
H17C 0.8171 1.0362 0.3825 0.129*
N1 0.07583 (14) 0.47009 (12) 0.15072 (10) 0.0391 (2)
H1A 0.0114 0.4382 0.1114 0.047*
O1 0.18656 (13) 0.60841 (11) −0.04169 (9) 0.0456 (2)
O2 0.91500 (16) 0.97189 (13) 0.21607 (13) 0.0668 (3)
S1 0.41037 (5) 0.34901 (4) 0.25677 (4) 0.05008 (12)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0361 (6) 0.0382 (6) 0.0460 (7) −0.0061 (5) −0.0172 (5) −0.0053 (5)
C2 0.0500 (7) 0.0328 (6) 0.0419 (7) −0.0089 (5) −0.0177 (6) −0.0033 (5)
C3 0.0772 (11) 0.0465 (8) 0.0470 (8) −0.0166 (7) −0.0288 (8) 0.0044 (6)
C4 0.0900 (13) 0.0610 (9) 0.0383 (8) −0.0249 (9) −0.0106 (8) 0.0002 (7)
C5 0.0627 (10) 0.0624 (9) 0.0476 (9) −0.0190 (8) 0.0023 (7) −0.0097 (7)
C6 0.0440 (7) 0.0525 (8) 0.0460 (8) −0.0094 (6) −0.0091 (6) −0.0090 (6)
C7 0.0424 (6) 0.0363 (6) 0.0346 (6) −0.0104 (5) −0.0117 (5) −0.0070 (5)
C8 0.0328 (6) 0.0381 (6) 0.0352 (6) −0.0030 (4) −0.0122 (5) −0.0083 (5)
C9 0.0315 (5) 0.0364 (5) 0.0351 (6) −0.0053 (4) −0.0111 (5) −0.0064 (4)
C10 0.0415 (7) 0.0381 (6) 0.0480 (7) −0.0074 (5) −0.0196 (6) −0.0017 (5)
C11 0.0377 (6) 0.0320 (5) 0.0441 (7) −0.0069 (5) −0.0140 (5) −0.0018 (5)
C12 0.0401 (7) 0.0446 (7) 0.0500 (8) −0.0056 (5) −0.0076 (6) −0.0108 (6)
C13 0.0590 (9) 0.0453 (7) 0.0532 (8) −0.0077 (6) −0.0170 (7) −0.0168 (6)
C14 0.0458 (7) 0.0337 (6) 0.0629 (9) −0.0073 (5) −0.0253 (6) −0.0037 (6)
C15 0.0358 (7) 0.0471 (7) 0.0667 (10) −0.0037 (5) −0.0121 (6) −0.0132 (7)
C16 0.0424 (7) 0.0462 (7) 0.0535 (8) −0.0048 (5) −0.0114 (6) −0.0169 (6)
C17 0.0936 (15) 0.0580 (10) 0.138 (2) −0.0058 (10) −0.0690 (14) −0.0361 (12)
N1 0.0399 (5) 0.0479 (6) 0.0349 (5) −0.0135 (5) −0.0146 (4) −0.0064 (4)
O1 0.0453 (5) 0.0596 (6) 0.0358 (5) −0.0154 (4) −0.0168 (4) −0.0019 (4)
O2 0.0591 (7) 0.0568 (6) 0.1027 (10) −0.0091 (5) −0.0422 (7) −0.0231 (6)
S1 0.0448 (2) 0.03683 (18) 0.0684 (3) 0.00032 (13) −0.02330 (17) −0.00078 (15)

Geometric parameters (Å, º)

C1—C9 1.3292 (18) C10—C11 1.5061 (18)
C1—S1 1.7565 (15) C10—H10A 0.9700
C1—H1 0.9300 C10—H10B 0.9700
C2—C7 1.3881 (19) C11—C12 1.3758 (19)
C2—C3 1.392 (2) C11—C16 1.388 (2)
C2—S1 1.7688 (17) C12—C13 1.395 (2)
C3—C4 1.372 (3) C12—H12 0.9300
C3—H3 0.9300 C13—C14 1.375 (2)
C4—C5 1.370 (3) C13—H13 0.9300
C4—H4 0.9300 C14—O2 1.3721 (17)
C5—C6 1.375 (2) C14—C15 1.386 (2)
C5—H5 0.9300 C15—C16 1.378 (2)
C6—C7 1.389 (2) C15—H15 0.9300
C6—H6 0.9300 C16—H16 0.9300
C7—N1 1.4124 (17) C17—O2 1.415 (2)
C8—O1 1.2337 (16) C17—H17A 0.9600
C8—N1 1.3474 (16) C17—H17B 0.9600
C8—C9 1.4935 (16) C17—H17C 0.9600
C9—C10 1.5170 (18) N1—H1A 0.8600
C9—C1—S1 125.87 (10) C9—C10—H10B 108.6
C9—C1—H1 117.1 H10A—C10—H10B 107.6
S1—C1—H1 117.1 C12—C11—C16 117.91 (12)
C7—C2—C3 119.01 (14) C12—C11—C10 121.68 (12)
C7—C2—S1 120.68 (11) C16—C11—C10 120.41 (12)
C3—C2—S1 120.27 (12) C11—C12—C13 121.51 (13)
C4—C3—C2 120.83 (15) C11—C12—H12 119.2
C4—C3—H3 119.6 C13—C12—H12 119.2
C2—C3—H3 119.6 C14—C13—C12 119.54 (13)
C5—C4—C3 119.96 (15) C14—C13—H13 120.2
C5—C4—H4 120.0 C12—C13—H13 120.2
C3—C4—H4 120.0 O2—C14—C13 124.88 (14)
C4—C5—C6 120.22 (16) O2—C14—C15 115.39 (13)
C4—C5—H5 119.9 C13—C14—C15 119.73 (12)
C6—C5—H5 119.9 C16—C15—C14 119.91 (13)
C5—C6—C7 120.46 (15) C16—C15—H15 120.0
C5—C6—H6 119.8 C14—C15—H15 120.0
C7—C6—H6 119.8 C15—C16—C11 121.40 (13)
C2—C7—C6 119.49 (13) C15—C16—H16 119.3
C2—C7—N1 122.61 (12) C11—C16—H16 119.3
C6—C7—N1 117.72 (12) O2—C17—H17A 109.5
O1—C8—N1 119.75 (10) O2—C17—H17B 109.5
O1—C8—C9 118.99 (11) H17A—C17—H17B 109.5
N1—C8—C9 121.26 (11) O2—C17—H17C 109.5
C1—C9—C8 122.57 (11) H17A—C17—H17C 109.5
C1—C9—C10 122.99 (11) H17B—C17—H17C 109.5
C8—C9—C10 114.20 (10) C8—N1—C7 130.70 (10)
C11—C10—C9 114.61 (10) C8—N1—H1A 114.6
C11—C10—H10A 108.6 C7—N1—H1A 114.6
C9—C10—H10A 108.6 C14—O2—C17 117.51 (14)
C11—C10—H10B 108.6 C1—S1—C2 99.41 (6)
C7—C2—C3—C4 1.9 (2) C9—C10—C11—C16 78.58 (16)
S1—C2—C3—C4 −175.66 (12) C16—C11—C12—C13 −0.3 (2)
C2—C3—C4—C5 −1.1 (2) C10—C11—C12—C13 −179.73 (13)
C3—C4—C5—C6 −0.3 (3) C11—C12—C13—C14 −0.2 (2)
C4—C5—C6—C7 0.9 (2) C12—C13—C14—O2 180.00 (14)
C3—C2—C7—C6 −1.28 (18) C12—C13—C14—C15 0.6 (2)
S1—C2—C7—C6 176.27 (10) O2—C14—C15—C16 −179.96 (13)
C3—C2—C7—N1 −176.30 (11) C13—C14—C15—C16 −0.5 (2)
S1—C2—C7—N1 1.25 (16) C14—C15—C16—C11 0.0 (2)
C5—C6—C7—C2 −0.1 (2) C12—C11—C16—C15 0.4 (2)
C5—C6—C7—N1 175.17 (12) C10—C11—C16—C15 179.84 (13)
S1—C1—C9—C8 −6.64 (19) O1—C8—N1—C7 −172.86 (12)
S1—C1—C9—C10 179.39 (10) C9—C8—N1—C7 6.0 (2)
O1—C8—C9—C1 −134.74 (14) C2—C7—N1—C8 −51.01 (19)
N1—C8—C9—C1 46.39 (18) C6—C7—N1—C8 133.88 (14)
O1—C8—C9—C10 39.71 (16) C13—C14—O2—C17 −14.9 (2)
N1—C8—C9—C10 −139.16 (12) C15—C14—O2—C17 164.55 (16)
C1—C9—C10—C11 −0.45 (19) C9—C1—S1—C2 −57.47 (14)
C8—C9—C10—C11 −174.88 (11) C7—C2—S1—C1 58.98 (11)
C9—C10—C11—C12 −102.00 (15) C3—C2—S1—C1 −123.50 (11)

Hydrogen-bond geometry (Å, º)

Cg is the centroid of the C3–C7 benzene ring.

D—H···A D—H H···A D···A D—H···A
N1—H1A···O1i 0.86 2.02 2.860 (2) 167
C17—H17B···Cgii 0.96 2.96 3.561 (3) 122

Symmetry codes: (i) −x, −y+1, −z; (ii) x+1, y+1, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SJ5315).

References

  1. Bakthadoss, M., Selvakumar, R., Manikandan, N. & Murugavel, S. (2013). Acta Cryst. E69, o562–o563. [DOI] [PMC free article] [PubMed]
  2. Bruker (2004). APEX2, SAINT and XPREP Bruker AXS Inc., Madison, Wisconsin, U. S. A.
  3. Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354–1358.
  4. Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854.
  5. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813009215/sj5315sup1.cif

e-69-0o693-sup1.cif (24.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813009215/sj5315Isup2.hkl

e-69-0o693-Isup2.hkl (257.3KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813009215/sj5315Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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