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. 1987 Jun;7(6):2097–2103. doi: 10.1128/mcb.7.6.2097

Structure of two developmentally regulated Dictyostelium discoideum ubiquitin genes.

R Giorda, H L Ennis
PMCID: PMC365330  PMID: 3037345

Abstract

A previously isolated cDNA clone, pLK229, that is specific for mRNA developmentally expressed during Dictyostelium discoideum spore germination and multicellular development, was used to screen two genomic libraries. Two genomic sequences homologous to pLK229 were isolated and sequenced. Genomic clone p229 is identical to the cDNA clone pLK229 and codes for a polypeptide of 381 amino acids. This polypeptide is composed of five tandem repeats of the same 76-amino-acid sequence. Clone lambda 229 codes for a protein of 229 amino acids, containing three tandem repeats of the identical 76-amino-acid sequence. A computer search for homology to known proteins revealed that the 76-amino-acid repeat was identical to human and bovine ubiquitin except for two amino acid differences.

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Selected References

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  1. Alton T. H., Lodish H. F. Developmental changes in messenger RNAs and protein synthesis in Dictyostelium discoideum. Dev Biol. 1977 Oct 1;60(1):180–206. doi: 10.1016/0012-1606(77)90118-x. [DOI] [PubMed] [Google Scholar]
  2. Barklis E., Pontius B., Barfield K., Lodish H. F. Structure of the promoter of the Dictyostelium discoideum prespore EB4 gene. Mol Cell Biol. 1985 Jun;5(6):1465–1472. doi: 10.1128/mcb.5.6.1465. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Blumberg D. D., Lodish H. F. Changes in the messenger RNA population during differentiation of dictyostelium discoideum. Dev Biol. 1980 Aug;78(2):285–300. doi: 10.1016/0012-1606(80)90337-1. [DOI] [PubMed] [Google Scholar]
  4. Bond U., Schlesinger M. J. Ubiquitin is a heat shock protein in chicken embryo fibroblasts. Mol Cell Biol. 1985 May;5(5):949–956. doi: 10.1128/mcb.5.5.949. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Busch H., Goldknopf I. L. Ubiquitin - protein conjugates. Mol Cell Biochem. 1981 Nov 13;40(3):173–187. doi: 10.1007/BF00224611. [DOI] [PubMed] [Google Scholar]
  6. Ciechanover A., Finley D., Varshavsky A. The ubiquitin-mediated proteolytic pathway and mechanisms of energy-dependent intracellular protein degradation. J Cell Biochem. 1984;24(1):27–53. doi: 10.1002/jcb.240240104. [DOI] [PubMed] [Google Scholar]
  7. Clewell D. B., Helinski D. R. Supercoiled circular DNA-protein complex in Escherichia coli: purification and induced conversion to an opern circular DNA form. Proc Natl Acad Sci U S A. 1969 Apr;62(4):1159–1166. doi: 10.1073/pnas.62.4.1159. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Cotter D. A., Raper K. B. Spore germination in Dictyostelium discoideum. Proc Natl Acad Sci U S A. 1966 Sep;56(3):880–887. doi: 10.1073/pnas.56.3.880. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Dowbenko D. J., Ennis H. L. Regulation of protein synthesis during spore germination in Dictyostelium discoideum. Proc Natl Acad Sci U S A. 1980 Apr;77(4):1791–1795. doi: 10.1073/pnas.77.4.1791. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Dworkin-Rastl E., Shrutkowski A., Dworkin M. B. Multiple ubiquitin mRNAs during Xenopus laevis development contain tandem repeats of the 76 amino acid coding sequence. Cell. 1984 Dec;39(2 Pt 1):321–325. doi: 10.1016/0092-8674(84)90010-2. [DOI] [PubMed] [Google Scholar]
  11. Ennis H. L., Sussman M. Mutants of Dictyostelium discoideum defective in spore germination. J Bacteriol. 1975 Oct;124(1):62–64. doi: 10.1128/jb.124.1.62-64.1975. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Giri J. G., Ennis H. L. Developmental changes in RNA and protein synthesis during germination of Dictyostelium discoideum spores. Dev Biol. 1978 Nov;67(1):189–201. doi: 10.1016/0012-1606(78)90308-1. [DOI] [PubMed] [Google Scholar]
  13. Giri J. G., Ennis H. L. Protein and RNA synthesis during spore germination in the cellular slime mold Dictyostelium discoideum. Biochem Biophys Res Commun. 1977 Jul 11;77(1):282–289. doi: 10.1016/s0006-291x(77)80194-0. [DOI] [PubMed] [Google Scholar]
  14. Goldknopf I. L., Busch H. Isopeptide linkage between nonhistone and histone 2A polypeptides of chromosomal conjugate-protein A24. Proc Natl Acad Sci U S A. 1977 Mar;74(3):864–868. doi: 10.1073/pnas.74.3.864. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Henikoff S. Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing. Gene. 1984 Jun;28(3):351–359. doi: 10.1016/0378-1119(84)90153-7. [DOI] [PubMed] [Google Scholar]
  16. Hershko A., Ciechanover A. Mechanisms of intracellular protein breakdown. Annu Rev Biochem. 1982;51:335–364. doi: 10.1146/annurev.bi.51.070182.002003. [DOI] [PubMed] [Google Scholar]
  17. Kelly L. J., Kelly R., Ennis H. L. Characterization of cDNA clones specific for sequences developmentally regulated during Dictyostelium discoideum spore germination. Mol Cell Biol. 1983 Nov;3(11):1943–1948. doi: 10.1128/mcb.3.11.1943. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Kelly R., Kelly L. J., Ennis H. L. Dictyostelium discoideum mRNAs developmentally regulated during spore germination have short half-lives. Mol Cell Biol. 1985 Jan;5(1):133–139. doi: 10.1128/mcb.5.1.133. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Kimmel A. R., Firtel R. A. Sequence organization in Dictyostelium: unique structure at the 5'-ends of protein coding genes. Nucleic Acids Res. 1983 Jan 25;11(2):541–552. doi: 10.1093/nar/11.2.541. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Levinger L., Varshavsky A. Selective arrangement of ubiquitinated and D1 protein-containing nucleosomes within the Drosophila genome. Cell. 1982 Feb;28(2):375–385. doi: 10.1016/0092-8674(82)90355-5. [DOI] [PubMed] [Google Scholar]
  21. Loomis W. F., Wheeler S. Heat shock response of Dictyostelium. Dev Biol. 1980 Oct;79(2):399–408. doi: 10.1016/0012-1606(80)90125-6. [DOI] [PubMed] [Google Scholar]
  22. Norrander J., Kempe T., Messing J. Construction of improved M13 vectors using oligodeoxynucleotide-directed mutagenesis. Gene. 1983 Dec;26(1):101–106. doi: 10.1016/0378-1119(83)90040-9. [DOI] [PubMed] [Google Scholar]
  23. Ozkaynak E., Finley D., Varshavsky A. The yeast ubiquitin gene: head-to-tail repeats encoding a polyubiquitin precursor protein. Nature. 1984 Dec 13;312(5995):663–666. doi: 10.1038/312663a0. [DOI] [PubMed] [Google Scholar]
  24. Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Schlesinger D. H., Goldstein G., Niall H. D. The complete amino acid sequence of ubiquitin, an adenylate cyclase stimulating polypeptide probably universal in living cells. Biochemistry. 1975 May 20;14(10):2214–2218. doi: 10.1021/bi00681a026. [DOI] [PubMed] [Google Scholar]
  26. Southern E. M. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol. 1975 Nov 5;98(3):503–517. doi: 10.1016/s0022-2836(75)80083-0. [DOI] [PubMed] [Google Scholar]
  27. St John T., Gallatin W. M., Siegelman M., Smith H. T., Fried V. A., Weissman I. L. Expression cloning of a lymphocyte homing receptor cDNA: ubiquitin is the reactive species. Science. 1986 Feb 21;231(4740):845–850. doi: 10.1126/science.3003914. [DOI] [PubMed] [Google Scholar]
  28. Sussman R., Sussman M. Cultivation of Dictyostelium discoideum in axenic medium. Biochem Biophys Res Commun. 1967 Oct 11;29(1):53–55. doi: 10.1016/0006-291x(67)90539-6. [DOI] [PubMed] [Google Scholar]
  29. Twigg A. J., Sherratt D. Trans-complementable copy-number mutants of plasmid ColE1. Nature. 1980 Jan 10;283(5743):216–218. doi: 10.1038/283216a0. [DOI] [PubMed] [Google Scholar]
  30. Wiborg O., Pedersen M. S., Wind A., Berglund L. E., Marcker K. A., Vuust J. The human ubiquitin multigene family: some genes contain multiple directly repeated ubiquitin coding sequences. EMBO J. 1985 Mar;4(3):755–759. doi: 10.1002/j.1460-2075.1985.tb03693.x. [DOI] [PMC free article] [PubMed] [Google Scholar]

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