Abstract
Isotopic, hydrogen-to-deuterium substitution has been an invaluable tool in the characterization of small molecules and biological nanostructures. The natural variability of most inorganic nanomaterials has hindered the use of isotopic substitution to gaining meaningful insights of their structure. The ideal helical wrapping of flavin mononucleotide (FMN) around (8,6)-SWNTs (single-walled carbon nanotubes) is presently utilized to probe isotopic-dependent intermolecular interactions. The facile proton-to-deuterium exchange of the imide group of FMN, enabled us to alter the intermolecular stability of the helix depending on the surrounding solvent (i.e. H2O vs. D2O). Our studies show that FMN-dispersed (8,6)-SWNTs exhibit greater stability in D2O as opposed to H2O. The higher complex stability in D2O was verified based on: (i) FMN helix replacement with SDBS (sodium dodecylbenzenesulfate); as well as (ii) thermal-, and (iii) pH-induced helix dissociation. This is in agreement with the previously observed stronger amide H-bonding of proteins in D2O, and to the best of our knowledge, it demonstrates the architectural fidelity of FMN-wrapped SWNTs, which is expected to further enhance the assembly repertoire of carbon nanotubes.
INTRODUCTION
Recent advances in the synthesis and applications of nanostructured materials have intensified the need for advanced metrological characterization. Aside from having to institute techniques with greater measuring accuracy, one also needs to increase the reliability in force determination governing nanoscale interactions. While great advances have been accomplished in force determination between individual species using atomic force microscopy (AFM),[1] these measurements are not easily translated to cooperative systems involving concerted organization. The ordering of surface-binding agents (herein called “surfactants”) around single-walled carbon nanotubes (SWNTs),[2,3] monodispersed nanocrystals,[4,5] graphene,[6] highly-ordered pyrolytic graphite (HOPG),[7,8] and other crystalline surfaces,[9] are typically governed by not only surfactant-nanostructure interactions but also by lateral surfactant organization, where curvature is playing an important role. Gaining a better understanding of these interactions is crucial for the field of self-assembly,[10] since well-defined interfaces provide ideal interacting modules for future nanoarchitechtonics.[11]
Surfactant thermal desorption have been widely used for the determination of binding strength in rigid nanostructures like zeolites and immobilized nanostructures.[12,13,14] Extending thermal desorption to surfactant-dispersed nanocrystals, nanorods, nanotubes and nanoplatelets in the dilute state, is much more challenging due to nanomaterials aggregation following surfactant desorption. Upon formation, such aggregates tend to produce exothermic peaks that interfere with the endothermic surfactant desorption, rendering the results difficult to interpret. Such challenging task can be alleviated if another surfactant cooperatively takes the place of the desorbed surfactant to prevent nanostructure aggregation. This was recently demonstrated for SWNTs dispersed with low molecular weight flavin mononucleotide, (FMN) surfactant that was cooperatively replaced by another surfactant.[3] Such surfactant exchange induces a spectral shift in the electronic transitions of the encapsulated nanotube,[15] providing an ideal probe to quantitatively assess the magnitude of nanotube-surfactant interactions for different (n, m) chirality semiconducting nanotubes. Having said this, the question remains whether we can assess and quantify the much finer surfactant-surfactant interactions along with their degree of cooperativity.
In this contribution we illustrate that the surfactant-surfactant interactions at the surface of a nanomaterial can be differentiated via isotropic, hydrogen-to-deuterium substitution. For this, we employed the ideal helical wrapping of FMN around (8,6)-SWNTs, whose lateral stability is intimately coupled to the quadruple H-bonds responsible for forming the isoalloxazine ribbon, shown in Figure 1.[3,16,17,18] Depending on the surrounding solvent (i.e. H2O vs. D2O), the facile proton-to-deuterium exchange of the imide group enabled us to alter the intermolecular surfactant-surfactant interactions, while keeping the overall 8/1 FMN-dimer helix virtually intact. Such isotopic exchange indicated that FMN-dispersed (8,6)-SWNTs exhibit greater stability in D2O as opposed to H2O. This was verified in terms of higher FMN helix stability in D2O against its: (a) replacement with SDBS (sodium dodecylbenzenesulfate) surfactant exchange; and (b) thermal dissociation, which induces nanotube aggregation. This is in agreement with the previously observed stronger H-bond for N-D···O=C vs. N-H···O=C amides. This demonstrates the supreme architectural fidelity of FMN-wrapped nanotubes. Moreover, the controlled thermal and surfactant-exchange dissociation of the FMN helix is expected to further enhance the self-assemble repertoire of carbon nanotube along the lines of DNA and protein nanoarchitectonics.[19,20,21]
Figure 1.
Organization structure of flavin mononucleotide (FMN) around (8,6)-SWNTs. (a) Quadruple H-bonding stabilize the isoalloxazine ribbon that orderly wraps itself around the (8,6)-SWNT (b), while the D-ribityl phosphate side groups providing aqueous solubilization (c). C, H, N, O and P are illustrated as grey, white, blue, red and pink spheres, respectively.
EXPERIMENTAL SECTION
Materials
HiPco single-walled carbon nanotubes (SWNTs) were purchased from Unidym (with the lot number of R0513) and used without further purification. Riboflavin 5′-monophosphate sodium salt hydrate (FMN) 73–79%, and sodium dodecylbenzenesulfonate (SDBS) (technical grade) were purchased from Sigma-Aldrich and used as is. Deuterium oxide (D2O) 99.8%, deuterium chloride (DCl) (20 wt.% solution in D2O), sodium deuteroxide (NaOD) (40 wt.% solution in D2O) and hydrochloric acid, (1N standard solution) were acquired from Acros. Sodium hydroxide solution (1N Certified) was purchased from Fisher Chemical.
Characterization
Steady state fluorescence spectroscopy measurements were performed on a Jobin-Yvon Spex Fluorolog 3–211 spectrofluorometer equipped with a PMT NIR detector. Both excitation and emission spectra were collected with a 3 nm step size and their light intensities were corrected against instrumental variations using the Spex Fluorolog sensitivity correction factors. Steady state UV-Vis-NIR absorption spectroscopic measurements were obtained with a Perkin-Elmer Lambda 1050 UV-Vis-NIR spectrometer. pH measurements were performed using an Accumet Model #15 pH meter.
Preparation of H2O or D2O dispersions of FMN-wrapped SWNTs
Aqueous dispersions of SWNTs were prepared by adding 100 mg of HiPco SWNTs and 1.000 g of FMN to 100 mL of H2O (D2O). The mixture was bath sonicated for 1h, followed by tip sonication at 50% power for 4h, (Cole Parmer Ultrasonic Processor, 300 W), and ultracentrifugated at 100 kg for 10h (Beckman, SW28 rotor) to remove the majority of nanotube bundles and large aggregates. The resulting dispersion has a clear, dark greenish appearance and is mostly composed of FMN-wrapped SWNTs. This was further diluted in 1-to-3 v/v ratio with either H2O or D2O containing the same starting concentration of FMN, followed by a 30 min bath sonication to ensure that most FMN-wrapped SWNTs are individualized.
pH titrations of H2O or D2O dispersions of FMN-wrapped SWNTs
HCl and NaOH solutions with concentration of 0.5 N were prepared by 50% v/v dilution of a standard 1N solutions with deionized water. Similarly, 0.5 N DCl and NaOD solutions were prepared from their 20 wt.%, and 40 wt.% solutions by appropriate dilution with D2O. Acid or basic titrations from the neutral FMN-wrapped SWNT dispersions were performed by the appropriate addition of acid or base, followed by 5 min bath sonication to ensure complete pH equilibration. PL spectra were collected at each addition of acid or base (excitation at 744 and 741 nm for D2O and H2O dispersions of FMN-wrapped-SWNTs, respectively), along with measuring the resulting pH value.
FMN-to-SDBS surfactant exchange in H2O or D2O dispersions
Microliter portions of 0.1 N SDBS solution in H2O or D2O were added to 5 ml of the corresponding starting H2O or D2O dispersions of FMN-wrapped SWNTs, and the mixture was gently hand-shaken to prevent any bubble formation, prior to collecting its PL spectra (excitation at 715 nm for both D2O and H2O dispersions). The PL titration curves were fitted with the sigmoidal Hill equation,[22] to obtain the fitted Ka (mid-point) and γ (sigmoidal breadth) values. The Ka value is proportional to the binding strength of FMN to the nanotube, against SDBS replacement, while the γ value is inversely proportional to the cooperativity of this exchange.
Melting point measurements of H2O or D2O dispersions of FMN-wrapped SWNTs
A small amount (ca.10 ml) of as prepared H2O or D2O dispersions of FMN-wrapped SWNTs were transferred to a sample vials and were incubated for 5 min in an oil bath at a given temperature, before cooling down at room temperature, where its luminescence were measured (excitation at 744 and 741 nm for D2O and H2O dispersions of FMN-wrapped-SWNTs, respectively). The resultant PL intensities were normalized against the starting PL intensity at 25 °C. The midpoint of each PL intensity decay, herein reported as the “melting point” (m.p.) of the FMN helix, was obtained by sigmoidal Boltzmann fitting.[23]
RESULT AND DISCUSSION
Hydrophobic interaction play a key role in various molecular organization in aqueous media, such as cell membrane assembly, protein folding and DNA hybridization.[24,25,26,27] The formation of extended H-bonded networks between adjacent water molecules, produces ordered H2O organization with substantial enthalpic stabilization in the liquid phase.[28,29,30,31,32] Hydrophobic interactions and the poor solubility of non-polar molecules in water stems from the local destruction in H-bonding structure, that the insertions of these molecules inflict to the water lattice. This leads to the spontaneous rearrangement of water molecules in a cage-like structure around the solute.[29] This cage-like structure, if regular, can lead to the formation of slightly stronger H-bonding, similar to air-water interfaces that exhibit substantial surface tension.[32] Consequently, hydrophobic stabilization stems from the energy minimization of the total surface exposed to water as two or more molecules come together to reduce the local water restructuring.[31] This explains the profound aggregation tendency of pristine single-walled carbon nanotubes (SWNTs) in aqueous media.[33] Surfactants with appropriate structure to accommodate the extreme nanotube curvature have the ability to individualize SWNTs via introducing two additional interfaces with hydrophobic and hydrophilic interactions at opposite sides of the surfactant.[34] More recently, bile salts have led to improved stability of nanotube-surfactant suspensions.[35] A plausible explanation for the improved stability of such complexes is that their water cage attain greater long-range order.[29b] Along these lines, single-stranded (ss)-DNA and flavin mononucleotide (FMN) provide the planarity of bile salts as well as improved intermolecular interactions with both nanotubes (via charge transfer (CT)) and surfactant-surfactant stabilization (via intermolecular H-bonding).[2–3] In both cases, the formation of ordered surfactant assemblies has the potential to also increase the long-range order of the surrounding water cage. This begs the question whether solvent isotopic effects show any variation in the stability of FMN-wrapped nanotubes.
Despite the physical similarities of H2O and D2O, their influence on living systems is strikingly different.[36] D2O is highly toxic and even lethal at high concentrations for most living organisms. These two solvents possess some key different properties, which can greatly influence the organization of complex biostructures.[37,38,39,40] For example, the hydrophobic interactions are stronger in D2O than in H2O. This phenomena is attributed to the fact that the OH bond length in H2O is ca. 3% longer than that of O-D, while H-bonding in D2O is ca. 4% shorter than that in H2O.[41] This leads into a 5% stronger H-bonding in D2O as opposed to H2O.[39] Such increased strength is related to the higher mass of deuterium, which lowers the zero-point vibrational energy of the intermolecular mode of its highest frequency.[38,42]
Since hydrophobic interactions and H-bonding are stronger in D2O, as opposed to H2O, the helical wrapping of FMN around pristine SWNTs provides an ideal system to study the weak surfactant-surfactant interactions and hydrophobic effects on nanomaterials using hydrogen-to-deuterium substitution. Exchanging of hydrogen with deuterium in imides and alcohols are fast (typically in millisecond and second time range, respectively).[43,44] Consequently, following a 4 hr. sonication of SWNTs in a D2O solution of FMN, an exchange of all mobile hydrogens to deuterium atoms is expected. Figure S1 in the Supplemental Information Section, illustrates the deuterium-replaced hydrogens which are namely: (i) Isoalloxazine imide N-H to N-D; and (ii) Phosphate and D-ribityl O-H groups to O-D. Recent isotopic studies on proteins indicate that N-D is 0.03 Å shorter than N-H, and the N-O distance (N-H···O=C) are 0.02 ± 0.02 Å shorter in D2O as opposed to H2O.[45] This is expected to correspondingly decrease the neighboring isoalloxazine distances and possibly modify the stability of the FMN helix around a given SWNT.
The close intermolecular proximity that the isoalloxazines moieties of FMN need to attain in order to realize a stable self-assembled ribbon around SWNTs requires appropriate curvature. This curvature ensures minimal repulsion from the neighboring two isoallozaxine hydrogens (at C9 and one of the hydrogens of C-8 methyl group) on the two C1′ hydrogen atoms of the D-ribityl side group that hover above the isoalloxazine plain (Figure 1a&c).[18] In turn, this curvature requirement naturally selects SWNTs with diameter from 0.76 to 1.17 nm.[3] The optimum wrapping curvature for an 8/1 flavin helix is realized for (8,6)-SWNTs with diameter of 0.96 nm. This nanotube produces the most stable FMN/SWNT complex along with naturally enhancing its enrichment, as shown from the photoluminescence excitation (PLE) maps of Figure 2.
Figure 2.

Photoluminescence excitation (PLE) maps of FMN-wrapped SWNT dispersed in H2O (a) and D2O (b). Samples were centrifuged at 100 kg to increase nanotube individualization.
Upon closer examination of the PLE maps of FMN-wrapped nanotubes in both H2O and D2O, it becomes apparent that both solvents disperse the similar (n, m)-sem-SWNTs, mostly composed of (8,6), (9,4), (9,5), (7,6), (8,4), (7,5), (8,3) and (6,5). Among the two solvents, the (8,6)-SWNT appears to be more enriched in D2O, judging from the substantial PL intensity of (6,5) and (8,4) in H2O. Moreover, the nanotube individualization appears more enhanced in D2O as opposed to H2O, based on the sharpness of the D2O PLE map, which exhibits lesser EET (excitation energy transfer) cross peaks.[46] Apart from this, both H2O and D2O behave similarly, which justify us focusing on the strongest FMN-wrapped nanotube complex (i.e. (8,6)-SWNT)[3] for the rest of this contribution, in order to reveal finer isotopic differences.
Figure S2 and S3 illustrate the superimposed luminescence and excitation scans for (8,6)-SWNTs (i.e. horizontal and vertical traces of Figures 1a&b). Both (8,6) ES11 emission maxima are very close to each other (1213.2 and 1212.5 for H2O and D2O, respectively), with full-width at half maximum (FWHM) for H2O (48.0 nm) slightly larger than D2O (46.4 nm) (Figure S2). This pattern is reversed for the (8,6) ES22 peaks in terms of excitation maxima, while the H2O’s FWHM (30.9 nm) is still greater than D2O (29.3 nm) (Figure S3). Such ES11, ES22 maxima inversion trend has been observed before,[3] and is consistent with FMN helical wrapping of SWNTs.[18] The slightly redshift in ES11 PL emission of (8,6)-SWNTs in H2O than D2O is currently believed to originate mainly from the higher dielectric constant of H2O vs. D2O,[47] and to a lesser extend from charge transfer differences between the two helices. Having said this, the higher FWHM values for both (8,6) ES11 and ES22 transitions in H2O suggest that the 8/1 FMN helix possess greater inhomogeneity along the length of the nanotubes,[16] as opposed to D2O, which concurs with the lesser (8,6)-SWNT enrichment in H2O (apparent from Figure 1, S2 & S3).[3]
The slightly different pH values for H2O and D2O prompted us to also look into ionization variability of the two species and their influence to the luminescence intensity of the surrounded (8,6)-SWNT. Figure 3 illustrate the normalized photoluminescence intensity of (8,6)-SWNTs as a function of pH or pD, in conjunction with their acid/base titration curves. This was performed by titrating with acid and base the individualized FMN-wrapped nanotube dispersions, whose starting pH was 6.26 and 6.83 for H2O and D2O, respectively. Here, it is important to stress that all pD values measured by pH meter have been corrected based on Eq. 1,[48] and pKa values for deuterated FMN are calculated based on Eq. 2.[49]
Figure 3.
Normalized photoluminescence intensity of (8,6)-SWNTs (left ordinate) and acid/base titration (right ordinate) curves as function of pH or pD, for H2O (a) and D2O (b) dispersions of FMN-wrapped nanotubes, respectively. The excitation wavelength for the H2O and D2O dispersions are 741 and 744 nm, respectively, with a common 1212 nm emission wavelength. Superposition of titration (c) and normalized PL intensity (d) curves as a function of pH or pD.
| (1) |
| (2) |
The pH titration curves provides us for the most part a snapshot of the different ionization states of the phosphate group (termed as H2(FMN), H(FMN)− and (FMN)2−) at the tail end of the D-ribityl side chain of FMN, and to a lesser extend the ionization of the isoalloxazine imide hydrogen (defined as (FMN)3−), which takes place at higher pH values. Recent studies in the acidity constants of FMN in aqueous solutions indicate the following three pKa values for the ionization equilibriums of Eq. (2–4).[50]
| (2) |
| (3) |
| (4) |
The dashed lines in Figures 3a&b indicate the two equivalent points (EQP), where the FMN’s phosphate group can be found in a single ionization state (i.e. H(FMN)− and (FMN)2− for EQP1 and EQP2, respectively). Maximum PL intensity is observed for both H2O and D2O between these two points, suggesting that three O− charges every two phosphate groups is the ideal charge repulsion for maximum FMN helical stability of (8,6)-SWNTs. In the lower pH range, the luminescence of (8,6)-SWNTs drops substantially, due to the lack of adequate charge repulsion from the phosphate groups to prevent nanotube aggregation. The gradual PL intensity drop in the range of pH or pD of 7 to 8.5 originates from excessive charge repulsion of the phosphate groups. In this region, the FMN helices bear more than three negative charges per two phosphate groups (nearly four charges), which destabilize the helix via excessive charge repulsion. In the higher pH range (greater than 10), the loss of PL intensity is more dramatic and it is clearly associated with the destruction of the FMN helix due to imide proton ionization. Such ionization disrupts the H-bonded ribbon (Figure 1a) by inhibiting the H-bonding formation among the adjacent isoalloxazine rings.
Figure 3c contrasts the titration curve differences between H2O and D2O. To the first approximation, these results obey the well-accepted formula of Eq. 1 (for the titration curves) and Eq. 2 (for the two equivalent points EQP1 and EQP2).[51] On the other hand, the higher PL stability in the region of 6–12 (Figure 4d) indicate that the deuterated FMN helix (Figure S1) is more stable against phosphate charge repulsion and imide dissociation, as opposed to the normal FMN helix. This is the first indirect indication of the higher FMN helix stability in D2O as opposed to H2O, which is agreement with the enrichment and linewidth results of Figures 2 and S2 & S3, respectively.
Figure 4.
(a) FMN-to-SDBS surfactant exchange titration in H2O and D2O monitoring the photoluminescence intensity of (8,6)-SWNTs at their SBDS position (with a common 715 nm excitation and 1182 and 1186 nm emission for H2O and D2O, respectively). (b) Normalized photoluminescence intensity of FMN-wrapped (8,6)-SWNTs in H2O and D2O dispersions as a function of temperature (excitation wavelength for the H2O and D2O dispersions are 741 and 744 nm, respectively, with a common 1212 nm emission wavelength).
The cooperative replacement of FMN with sodium dodecylbenzenesulfate (SDBS) has proven an invaluable tool in the determination of binding strength of the flavin helix around various (n, m)-SWNTs.[3] Figure 4a illustrates the FMN-to-SDBS replacement of (8,6)-SWNTs in H2O and D2O, with the individual PL traces shown in Figures S4 and S5, respectively. The stability of the FMN helix is expressed in terms of the amount of SDBS required for replacing FMN with SDBS. This surfactant exchange also prevents the nanotubes from aggregating, thereby allowing them to be used as an internal probe to assess replacement dynamics. This replacement causes a significant blueshift in both PL and PLE maxima, ca. 31 and 28 nm shifts for the ES11 transition for H2O and D2O, respectively along with a common 26 nm blueshift for the ES22 transition of (8,6)-SWNTs.[3] This enables us to selectively monitor the particular nanotube species, which in this case is (8,6)-SWNTs.[3] The inflection point (Ka, shown as stars in Figure 4a) and 1/γ (γ = the width of the sigmoidal transition, 2.78 and 3.14 mmol of SDBS for H2O and D2O, respectively) provide the binding strength and cooperativity of the FMN helix around (8,6)-SWNTs. The results of Figure 4a provide the first solid proof that the deuterated FMN helix binds stronger onto (8,6) nanotubes as opposed to normal FMN. Moreover, the significant higher cooperativity of the FMN-to-SDBS replacement of the deuterated FMN helix verifies its higher spatial uniformity along the nanotube backbone.
The close analogy of the double stranded ds-DNA hybridization geometry to the H-bonded stabilized FMN ribbon (Figure 1), begs the question whether thermal denaturation experiments[52] can also be used to verify the higher binding stability of the deuterated FMN helix. Here, the progressive temperature increase is expected to “melt” or dissociate the H-bonds of the FMN-helices and induce subsequent nanotube bundling and precipitation. This can be readily witnessed by monitoring the loss of the given (n, m)-sem-SWNT PL intensity. Figure 4b illustrates the thermal dissociation results of FMN-wrapped (8,6)-SWNT in H2O and D2O, with the individual PL traces shown in Figure S6 and S7, respectively. A nearly 10 °C difference is witnessed between the “melting points” of the two species. This finding is in agreement with the FMN-to-SDBS replacement results, verifying beyond reasonable doubt that the deuterated flavin helix is substantially more ordered than the normal one. Unfortunately, the non-reversible nature of nanotube aggregation preclude us to make solid conclusions on the cooperativity of thermal dissociation of the FMN helix, which gives us a clue of the spatially uniformity of these helices.
The structural similarity of the normal and deuterated FMN helices around the same (n, m)-SWNT species (i.e. (8,6)), involves for the most part similar π– π stacking interactions. Consequently, differences in H-bonding between N-H···O=C and N-D···O=C are expected to play a key role in the stability of the normal and deuterated helices.[45] The 5% stronger H-bonding in D2O as opposed to H2O,[39] along with the average 0.02 ± 0.02 Å shorter N-O distances in proteins dissolved in D2O vs. H2O,[45] supports a closer isoalloxazine-isoalloxazine packing in D2O as opposed to H2O. In analogy with many polymeric systems, decrease in H-bonding distance increases their melting points.[37,53] Correspondingly, the shorter H-bonds in D2O concurs with the increased FMN-to-SDBS replacement transitions and thermal denaturation results of Figure 4a&b. Moreover, the increased deuterium attraction is expected to slightly shrink the width of the H-bonded ribbon (Figure 1a) and possibly facilitate an easier lateral packing of FMN along the length of the nanotube (Figure 1c). Such improved lateral packing might also enhance the surrounding water organization around the helix. This in conjunction with the slightly higher melting point and dipole moment of D2O vs. H2O,[54,55] could account for the improved thermal stability and structural uniformity of FMN-wrapped (8,6)-SWNTs in D2O. Moreover, in accordance with a previous study,[16] the narrower PL linewidth and significantly stronger emission of (8,6)-SWNTs in D2O vs. H2O (Figure S2) offer additional credence for the improved structural uniformity (i.e. lateral packing) of the FMN helix in D2O.
CONCLUSIONS
The ordered helical wrapping of FMN around (8,6)-SWNTs provides an ideal system to investigate isotopic-dependent intermolecular interactions in coatings, wrapped around nanomaterials with high uniformity. With the help of: (i) spectroscopic investigations; (ii) FMN helix replacement with a normal surfactant (i.e. SDBS); and (iii) pH as well as thermal-induced helix dissociation studies, the higher stability of the FMN helix in D2O vs. H2O is demonstrated. This is attributed to the stronger isoalloxazine H-bonding in D2O along with improved lateral packing of the FMN helix in the deuterated medium. A number of profound ramifications can be extracted from the results of this study. First and foremost, isotopic substitution can be used to study the internal stability of nanostructured systems involving complex self-assembly organizations. Such isotopic substitutions can help us pin-point forces that affect nanoscale properties with atomic and even sub-atomic resolution. Clearly, the computation challenges of this and relative systems are formidable, but with careful consideration one might be able to successfully tackle them. Linking the present results with computation understanding as well as providing future isotopic experiments based on infrared spectroscopy and neutron scattering holds enormous promise for advancing nanometronics of carbon nanotubes and related nanomaterials. Moreover, these studies can provide increased insight to the field of self-assembly and help define well-controlled interfaces for future nanosized architechtures.
Supplementary Material
Acknowledgments
Financial support by AFOSR FA9550-09-1-0201, and in part by NSF IIP-0930494 and CBET-0828771/0828824 and NIH ES013557, is kindly acknowledged.
References
- 1.Yacoot A, Koenders L. Recent developments in dimensional nanometrology using AFMs. Measurement Science and Technology. 2011;22:122001. [Google Scholar]
- 2.Tu X, Manohar S, Jagota A, Zheng M. DNA sequence motifs for structure-specific recognition and separation of carbon nanotubes. Nature. 2009;460:250–253. doi: 10.1038/nature08116. [DOI] [PubMed] [Google Scholar]
- 3.Ju SY, Doll J, Sharma I, Papadimitrakopoulos F. Selection of carbon nanotubes with specific chiralities using helical assemblies of flavin mononucleotide. Nature Nanotechnology. 2008;3:356–362. doi: 10.1038/nnano.2008.148. [DOI] [PubMed] [Google Scholar]
- 4.Negishi Y, Nobusada K, Tskuda T. Glutathione-protected gold clusters revisited: Bridging the gap between gold(I)-thiolate complexes and thiolate-protected gold nanocrystals. Journal of the American Chemical Society. 2005;127:5261–5270. doi: 10.1021/ja042218h. [DOI] [PubMed] [Google Scholar]
- 5.Venzo A, Antonello S, Gascon J, Guryanov I, Leapman RD, Perera NV, Sousa A, Zamuner M, Zanella A, Maran F. Effect of the charge state (z = −1, 0, +1) on the nuclear magnetic resonance of monodisperse Au25[S(CH2)2Ph]18(z) clusters. Analytical Chemistry. 2011;83:6355–6362. doi: 10.1021/ac2012653. [DOI] [PubMed] [Google Scholar]
- 6.Oyer AJ, Carrillo JY, Hire CC, Schniepp HC, Asandei AD, Dobrynin AV, Adamson DH. Stabilization of graphene sheets by a structured benzene/hexafluorobenzene mixed solvent. Journal of the American Chemical Society. 2012;134:5018–5021. doi: 10.1021/ja211225p. [DOI] [PubMed] [Google Scholar]
- 7.Pace G, Stefankiewicz A, Harrowfield J, Lehn JM, Samori P. Self-assembly of alkoxy-substituted bis(hydrazone)-based organic ligands and of a metallosupramolecular grid on graphite. ChemPhysChem. 2009;10:699–705. doi: 10.1002/cphc.200800733. [DOI] [PubMed] [Google Scholar]
- 8.Chen Q, Yan HJ, Yan CJ, Wan LJ, Wen GY, Zhang DQ. STM investigation of the dependence of alkane and alkane (C18H38, C19H40) derivatives self-assembly on molecular chemical structure on HOPG surface. Surface Science. 2008;602:1256–1266. [Google Scholar]
- 9.Yoshimoto S, Tsutsumi E, Narita R, Murata Y, Murata M, Fujiwara K, Komatsu K, Ito O, Itaya K. Epitaxial supramolecular assembly of fullerenes formed by using a coronene template on a Au(111) surface in solution. Journal of the American Chemical Society. 2007;129:4366–4376. doi: 10.1021/ja0684848. [DOI] [PubMed] [Google Scholar]
- 10.Steiner T. The hydrogen bond in the solid state. Angewandte Chemie International Edition. 2002;41:48–76. doi: 10.1002/1521-3773(20020104)41:1<48::aid-anie48>3.0.co;2-u. [DOI] [PubMed] [Google Scholar]
- 11.Brunsveld L, Folmer BJB, Meijer EW, Sijbesma RP. Supramolecular polymers. Chemical Reviews. 2001;101:4071–4079. doi: 10.1021/cr990125q. [DOI] [PubMed] [Google Scholar]
- 12.Morichige K, Kittaka S, Ihara S. Adsorption of methylamines on dehydrated NaX, NaY and KY zeolites. Journal of the Chemical Society, Faraday Transactions 1. 1985;81:2525–2539. [Google Scholar]
- 13.Stout SC, Larsen SC, Grassian VH. Adsorption, desorption and thermal oxidation of 2-CEES on nanocrystalline zeolites. Microporous and Mesoporous Materials. 2007;100:77–78. [Google Scholar]
- 14.Arii T, Oishi Y, Hashimoto S. Study on thermal desorption of aromatic guest molecules adsorbed in zeolites. Journal of the Mass Spectrometry Society of Japan. 2006;54:127–132. [Google Scholar]
- 15.Bachilo SM, Strano MS, Kittrell C, Hauge RH, Smalley RE, Weisman RB. Structure-assigned optical spectra of single-walled carbon nanotubes. Science. 2002;298:2361–2366. doi: 10.1126/science.1078727. [DOI] [PubMed] [Google Scholar]
- 16.Ju SY, Kopcha WP, Papadimitrakopoulos F. Brightly fluorescent single-walled carbon nanotubes via an oxygen-excluding surfactant organization. Science. 2009;323:1319–1323. doi: 10.1126/science.1166265. [DOI] [PubMed] [Google Scholar]
- 17.Ogunro OO, Wang XQ. Quantum electronic stability in selective enrichment of carbon nanotubes. nano Letters. 2009;9:1034–1038. doi: 10.1021/nl803379d. [DOI] [PubMed] [Google Scholar]
- 18.Ju SY, Abanulo DC, Badalucco CA, Gascon JA, Papadimitrakopoulos F. Handedness enantioselection of carbon nanotubes using helical assemblies of flavin mononucleotide. Journal of the American Chemical Society. 2012;134:13196–13199. doi: 10.1021/ja305250g. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 19.Rothemund PWK. Folding DNA to create nanoscale shapes and patterns. Nature. 2006;440:297–302. doi: 10.1038/nature04586. [DOI] [PubMed] [Google Scholar]
- 20.Ringler P, Schulz GE. Self-assembly of proteins into designed networks. Science. 2003;302:106–109. doi: 10.1126/science.1088074. [DOI] [PubMed] [Google Scholar]
- 21.Wilner OI, Weizmann Y, Gill R, Lioubashevski O, Freeman R, Willner I. Enzyme cascades activated on topologically programmed DNA scaffolds. Nature Nanotechnology. 2009;4:249–254. doi: 10.1038/nnano.2009.50. [DOI] [PubMed] [Google Scholar]
- 22.Stryer L. Biochemistry. 4. Freeman; New York: 1995. [Google Scholar]
- 23.Reif F. Fundamentals of statistical and thermal physics. McGraw-Hill; New York: 1985. [Google Scholar]
- 24.White SH, Wimley WC. Hydrophobic interactions of peptides with membrane interfaces. Biochimica et Biophysica Acta - Reviews on Biomembranes. 1998;1376:339–352. doi: 10.1016/s0304-4157(98)00021-5. [DOI] [PubMed] [Google Scholar]
- 25.Discher DE, Eisenberg A. Polymer vesicles. Science. 2002;297:967–973. doi: 10.1126/science.1074972. [DOI] [PubMed] [Google Scholar]
- 26.Dill KA, Bromberg S, Yue K, Fiebig KM, Yee DP, Thomas PD, Chan HS. Principles of protein folding - A perspective from simple exact models. Protein Science. 1995;4:561–602. doi: 10.1002/pro.5560040401. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 27.Hirschberg JHKK, Brunsveid L, Ramzi A, Vekemans JAJM, Sijbesma RP, Meijer EW. Helical self-assembled polymers from cooperative stacking of hydrogen-bonded pairs. Nature. 2000;407:167–170. doi: 10.1038/35025027. [DOI] [PubMed] [Google Scholar]
- 28.Privalov PL, Gill SJ. Stability of protein structure and hydrophobic interaction. Advances in Protein Chemistry. 1988;39:191–234. doi: 10.1016/s0065-3233(08)60377-0. [DOI] [PubMed] [Google Scholar]
- 29.(a) Frank HS, Evans MW. Free volume and entropy in condensed systems. Journal of Chemical Physics. 1945;13:507–532. [Google Scholar]; (b) Despa F, Berry RS. The origin of long-range attraction between hydrophobes in water. Biophysical Journal. 2007;92:373–378. doi: 10.1529/biophysj.106.087023. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 30.Yaacobi M, Ben-Niam A. Solvophobic interaction. The Journal of Physical Chemistry. 1974;78:175–178. [Google Scholar]
- 31.Meyer EE, Rosenberg KJ, Israelachvili J. Recent progress in understanding hydrophobic interactions. Proceedings of the National Academy of Sciences. 2006;103:15739–15746. doi: 10.1073/pnas.0606422103. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 32.Chandler D. Interfaces and the driving force of hydrophobic assembly. Nature. 2005;437:640–647. doi: 10.1038/nature04162. [DOI] [PubMed] [Google Scholar]
- 33.O’Connell MJ, Bachilo SM, Huffman CB, Moore VC, Strano MS, Haroz EH, Rialon KL, Boul PJ, Noon WH, Kittrell C, Ma J, Hauge RH, Weisman RB, Smalley RE. Band gap fluorescence from individual single-walled carbon nanotubes. Science. 2002;297:593–596. doi: 10.1126/science.1072631. [DOI] [PubMed] [Google Scholar]
- 34.Moore VC, Strano MS, Haroz EH, Hauge RH, Smalley RE, Schmidt J, Talmon Y. Individually suspended single-walled carbon nanotubes in various surfactants. Nano Letters. 2003;3:1379–1382. [Google Scholar]
- 35.Wenseleers W, Vlasov IL, Goovaerts E, Obraztsova ED, Lobach AS, Bouwen A. Efficient isolation and solubilization of pristine single-walled nanotubes in bile salt micelles. Advanced Functional Materials. 2004;14:1105–1112. [Google Scholar]
- 36.Thomson JF. Biological Effects of Deuterium. Pergamon Press; Oxford: 1963. [Google Scholar]
- 37.Cho Y, Sagle LB, Limura S, Zhang Y, Kherb J, Chilkoti A, Scholts JM, Cremer PS. Hydrogen bonding of β-turn structure is stabilized in D2O. Journal of the American Chemical Society. 2009;131:15188–15193. doi: 10.1021/ja9040785. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 38.Cioni P, Strambini GB. Effect of heavy water on protein flexibility. Biophysical Journal. 2002;82:3246–3253. doi: 10.1016/S0006-3495(02)75666-X. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 39.Ozawa T, Asakawa T, Garamus VM, Otha A, Miyagishi S. Effect of D2O solvent on the micellization behavior of 2-hydroxyl-1,1,2,3,3-pentahydroperfluoroundecyldiethyammonium halides. Journal of Oleo Science. 2005;54:585–588. [Google Scholar]
- 40.Luan CH, Urry DW. Solvent deuteration enhancement of hydrophobicity: DSC study of the inverse temperature transition of Elastin-Based polypeptides. Journal of the American Chemical Society. 1991;95:7896–7900. [Google Scholar]
- 41.Soper AK. Quantum differences between heavy and light water. Physical Review Letters. 2008;101:065502. doi: 10.1103/PhysRevLett.101.065502. [DOI] [PubMed] [Google Scholar]
- 42.Scheiner S, Cuma M. Relative stability of hydrogen and deuterium bonds. Journal of the American Chemical Society. 1996;118:1511–1521. [Google Scholar]
- 43.Hue S, Arumugam S, Cross TA. Hydrogen exchange in the lipid bilayer-bound gramicidin channel. Solid State Nuclear Magnetic Resonance. 1996;7:177–183. doi: 10.1016/s0926-2040(96)01260-x. [DOI] [PubMed] [Google Scholar]
- 44.Kwart H, Kuhn LP, Bannister EL. The rates and equilibria of hydrogen-deuterium exchange in hydroxylic compounds. Journal of the American Chemical Society. 1953;76:5998–6001. [Google Scholar]
- 45.Jaravine VA, Cordier F, Grzesiek S. Quantification of H/D isotope effects on protein hydrogen-bonds by h3JNC′ and 1JNC′ couplings and peptide group 15N and 13C′ chemical shifts. Journal of Biomolecular NMR. 2004;29:309–318. doi: 10.1023/B:JNMR.0000032516.87434.35. [DOI] [PubMed] [Google Scholar]
- 46.Tan PH, Rozhin AG, Hasan T, Hu P, Scardaci V, Milne WI, Ferrari AC. Photoluminescence spectroscopy of carbon nanotube bundles: Evidence for exciton energy transfer. Physical Review Letters. 2007;99:137402. doi: 10.1103/PhysRevLett.99.137402. [DOI] [PubMed] [Google Scholar]
- 47.Wyman J, Ingalls EN. The dielectric constant of deuterium oxide. Journal of the American Chemical Society. 1938;60:1182–1184. [Google Scholar]
- 48.Klotz IM, Frank BH. Deuterium-hydrogen exchange in amide N-H groups. Journal of the American Chemical Society. 1965;87:2721–2728. doi: 10.1021/ja01090a033. [DOI] [PubMed] [Google Scholar]
- 49.Krezel A, Bal W. A formula for correlating pKa values determined in D2O and H2O. Journal of Inorganic Biochemistry. 2004;98:161–166. doi: 10.1016/j.jinorgbio.2003.10.001. [DOI] [PubMed] [Google Scholar]
- 50.Sigel H, Song B, Liang G, Halbach R, Felder M, Bastian M. Acid-base and metal ion-binding properties of flavin mononucleotide (FMN2−). Is a ‘dielectric’ effect responsible for the increased complex stability? Inorganica Chimica Acta. 1995;240:313–322. [Google Scholar]
- 51.Bastian M, Sigel H. The self-association of flavin mononucleotide (FMN2−) as determined by 1H NMR shift measurements. Biophysical Chemistry. 1997;67:27–34. doi: 10.1016/s0301-4622(97)00012-4. [DOI] [PubMed] [Google Scholar]
- 52.Mirkin CA. Programming the assembly of two- and three-dimensional architectures with DNA and nanoscale inorganic building blocks. Inorganic Chemistry. 2000;39:2258–2272. doi: 10.1021/ic991123r. [DOI] [PubMed] [Google Scholar]
- 53.Papadimitrakopoulos F. PhD Thesis. U. Mass; Amherst: 1993. Synthesis, structure and phase behavior of liquid crystalline polyurethanes. [Google Scholar]
- 54.Winnik FM. Association of hydrophobic polymers in H2O and D2O: Fluorescence studies with (hydroxypropyl)cellulose. Journal of Physical Chemistry. 1989;93:7452–7457. [Google Scholar]
- 55.Clough SA, Beers Y, Klein GP, Rothman LS. Dipole moment of water from Stark measurements of H2O, HDO, and D2O. Journal of Chemical Physics. 1973;59:2254–2259. [Google Scholar]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.



