FIGURE 3.

Characterization of top-ranking candidate loci. (A) Ranking, average read coverage, number of sequencing reads, length of mapped loci, predicted template, genomic location, and presence of putative pseudoknot structure (Ψ-knot) or open-reading frame (ORF) are listed. Ranking is based on the average read coverage calculated by (Read-number × Read-length/Locus-length). (B) Patterns of read coverage for candidates #1 and #2. The locations of the predicted template (red) and the putative pseudoknot structure (green) are depicted.