Homologs that fail to synapse during mammalian meiosis are transcriptionally inactivated via meiotic silencing, an epigenetic mechanism critical to fertility. Checkpoint protein ATR localizes to unsynapsed chromosomes, but its role in meiotic silencing is poorly defined. Using a strategy to temporarily delete ATR in the germline, Royo et al. show that ATR first regulates unsynapsed chromosome sensing and later transduces signals to the surrounding chromatin. This study reveals multiple roles for ATR in meiotic silencing and presents a novel gene ablation technique.
Keywords: ATR, meiosis, sex chromosomes
Abstract
In mammals, homologs that fail to synapse during meiosis are transcriptionally inactivated. This process, meiotic silencing, drives inactivation of the heterologous XY bivalent in male germ cells (meiotic sex chromosome inactivation [MSCI]) and is thought to act as a meiotic surveillance mechanism. The checkpoint protein ATM and Rad3-related (ATR) localizes to unsynapsed chromosomes, but its role in the initiation and maintenance of meiotic silencing is unknown. Here we show that ATR has multiple roles in silencing. ATR first regulates HORMA (Hop1, Rev7, and Mad2) domain protein HORMAD1/2 phosphorylation and localization of breast cancer I (BRCA1) and ATR cofactors ATR-interacting peptide (ATRIP)/topoisomerase 2-binding protein 1 (TOPBP1) at unsynapsed axes. Later, it acts as an adaptor, transducing signaling at unsynapsed axes into surrounding chromatin in a manner that requires interdependence with mediator of DNA damage checkpoint 1 (MDC1) and H2AFX. Finally, ATR catalyzes histone H2AFX phosphorylation, the epigenetic event leading to gene inactivation. Using a novel genetic strategy in which MSCI is used to silence a chosen gene in pachytene, we show that ATR depletion does not disrupt the maintenance of silencing and that silencing comprises two phases: The first is dynamic and reversible, and the second is stable and irreversible. Our work identifies a role for ATR in the epigenetic regulation of gene expression and presents a new technique for ablating gene function in the germline.
During mammalian meiosis, homologous chromosomes synapse and recombine, generating crossovers that are essential for correct chromosome segregation (Handel and Schimenti 2010). In order to prevent the generation of aneuploid gametes, meiotic cells exhibiting defects in synapsis or recombination are eliminated from the germ cell pool by meiotic surveillance mechanisms (Nagaoka et al. 2012). The molecular pathways that constitute these surveillance mechanisms are currently not well understood.
One proposed mechanism by which unsynapsed chromosomes trigger germ cell arrest is meiotic silencing (Baarends et al. 2005; Turner et al. 2005; Ichijima et al. 2012). At the onset of pachytene, genes located on unsynapsed chromosomes are inactivated, remaining so for the rest of meiosis and, in the male, after this time (Greaves et al. 2006; Namekawa et al. 2006; Turner et al. 2006). Meiotic silencing has been proposed to cause arrest by starving germ cells of essential gene products (Burgoyne et al. 2009). Other suggested functions include silencing of transposable elements and inhibition of transcription at sites of meiotic DNA double-strand break (DSB) formation (Inagaki et al. 2010). During wild-type male meiosis, the heterologous X and Y (sex) chromosomes remain largely unsynapsed, and this triggers meiotic silencing of X- and Y-linked genes. The resulting phenomenon, known as meiotic sex chromosome inactivation (MSCI) (McKee and Handel 1993; Yan and McCarrey 2009), affects protein-coding but not microRNA genes (Song et al. 2009) and results in the formation of the heterochromatic sex body (Solari 1974). MSCI is essential for male fertility (Royo et al. 2010) and represents an ideal paradigm for studying the epigenetics of meiotic silencing.
Meiotic silencing involves two sets of proteins: “sensors,” which localize to axial elements (AEs) and sense asynapsis, and “effectors,” which localize to the chromatin loops associated with unsynapsed AEs, causing gene silencing over a considerable distance. The AE component synaptonemal complex protein 3 (SYCP3) (Kouznetsova et al. 2009), HORMA (Hop1, Rev7, and Mad2) domain proteins HORMAD1 (Daniel et al. 2011) and HORMAD2 (Wojtasz et al. 2012), and breast cancer I gene BRCA1 (Turner et al. 2004) have been identified as sensors: BRCA1 accumulates along unsynapsed AEs in an SYCP3-, HORMAD1-, and HORMAD2-dependent manner, and mice deficient in any of these four proteins exhibit MSCI defects. In contrast, the mediator of DNA damage checkpoint 1 (MDC1) (Ichijima et al. 2011) and histone variant H2AFX (Fernandez-Capetillo et al. 2003) are silencing effectors: In MDC1- and H2AFX-nulls, gene silencing within the chromosome loops does not occur. Ser139 phosphorylation of H2AFX (γH2AFX) is the key epigenetic event triggering MSCI, with spreading of this modification along chromosome loops being MDC1-dependent (Ichijima et al. 2011). Ago4−/− mice also exhibit a defect in MSCI, associated with defective γH2AFX localization on the XY bivalent and altered small RNA profiles (Modzelewski et al. 2012).
H2AFX Ser139 phosphorylation is catalyzed by the PI3K-like kinases ataxia telangiectasia mutated (ATM), ATM and Rad3-related (ATR), and DNA-dependent protein kinase (DNA-PK) (Sedelnikova et al. 2003). Which kinase generates γH2AFX on unsynapsed meiotic chromosomes is unclear. H2AFX phosphorylation is preserved on the XY bivalent in DNA-PK and Atm single nulls (Bellani et al. 2005). This implies that either ATR is the responsible kinase or the PI3K-like kinases act redundantly in this context in a manner already documented in mitotic cells (Stiff et al. 2004). Indeed, both ATR (Turner et al. 2004) and Ser1981-phosphorylated ATM (Hamer et al. 2004) have been found to localize to the XY bivalent during pachytene. Attempts to discriminate between these possibilities have been hampered by the fact that Atr ablation causes embryonic lethality (Brown and Baltimore 2000).
A number of other questions concerning the mechanisms underlying meiotic silencing remain unresolved. First, it is unclear how sensing of asynapsis at AEs is transduced into gene silencing along associated chromatin loops. Interestingly, ATR exhibits the unusual property of localizing to both the unsynapsed AEs and the surrounding chromatin of the XY bivalent at the onset of MSCI (Turner et al. 2004). This raises the possibility that it connects the sensing and effector steps in the silencing pathway. Furthermore, the interrelationships between ATR and other silencing factors—e.g., HORMAD1, HORMAD2, BRCA1, MDC1, and H2AFX—have not been examined. In mitotic cells, ATR is recruited to sites of RPA-coated ssDNA through its binding partner, ATR-interacting peptide (ATRIP), with ATR subsequently being activated by DNA topoisomerase 2-binding protein 1 (TOPBP1) (Burrows and Elledge 2008). ATRIP and TOPBP1 localize to the sex chromosomes in male meiosis (Refolio et al. 2011), but how they are recruited there is unclear. Finally, ATR localizes to the XY bivalent from early pachytene until late diplotene; i.e., for some 8–9 d after the initiation of MSCI (Turner et al. 2004). This raises the questions of whether meiotic silencing is a dynamic process, involving continuous H2AFX phosphorylation, and whether ATR is required for the maintenance of the inactive state.
To interrogate these points, we generated two forms of conditional Atr mutant mice. The first uses a Cre-recombinase-driven approach to delete ATR at the initiation of silencing, and the second implements a novel, MSCI-driven silencing strategy to deplete ATR levels at later stages, after silencing has been established.
Results
ATR ablation causes meiotic arrest and defective H2AFX phosphorylation
To examine the role of Atr in MSCI, we used a previously described tamoxifen-inducible Cre-ERT2 approach in which Cre-ERT2 expression is driven from the human ubiquitin C promoter (Ruzankina et al. 2007). Atrflox/− males treated with tamoxifen and killed 3 mo later exhibit spermatogonial stem cell loss and no germ cells in the seminiferous epithelium (Ruzankina et al. 2007). We therefore used a modified strategy in which Atrflox/− males and Atrflox/+ controls received 1 wk of tamoxifen treatment and were then killed at earlier time points after treatment cessation (see the Materials and Methods for further details on treatment strategy). Here we focus only on the meiotic silencing phenotypes.
Beginning at 3 d after cessation of tamoxifen treatment, we observed abnormal nuclear morphology in spermatocytes from Atrflox/− males, extending from stages I to VI of the seminiferous cycle, as assayed by testis histology (Fig. 1A). This was associated with meiotic germ cell loss between stages III and V, corresponding to mid-pachytene. The level of ATR protein, determined by Western blotting (Fig. 1B) and immunostaining of testis sections (Fig. 1C), was globally reduced in Atrflox/− testes 3-d after treatment cessation relative to Atrflox/+ controls. This time point was therefore chosen for further characterization of the Atr-null phenotype.
To assess the degree of ATR depletion in Atrflox/− testes in greater detail, we performed immunostaining on surface spreads in combination with an antibody to the AE marker SYCP3. In Atrflox/+ control males, we first observed ATR staining at zygotene, where it appeared as foci on AEs (Fig. 1D). Later, at pachytene, ATR was observed exclusively on the AEs and the chromatin of the XY bivalent (Fig. 1D). In Atrflox/− males, the ATR staining patterns at zygotene and pachytene were lost (Fig. 1D); in the latter cell type, traces of ATR were observed at the pseudoautosomal region (PAR) (Fig. 1D, and see the figure legends for number of cells examined for this and later experiments). Normal ATR staining was observed in Atrflox/− late pachytene and diplotene cells due to the fact that these more advanced cell types had not undergone Atr deletion (Fig. 1D; see below for further discussion).
ATM is required for H2AFX phosphorylation at DNA DSBs during leptotene, while ATR has been proposed to regulate H2AFX phosphorylation at DNA DSBs during zygotene (Bellani et al. 2005; Turner et al. 2005). ATR and Ser1981-phosphorylated ATM have both been localized to the XY chromatin at early pachytene (Hamer et al. 2004; Turner et al. 2004), and it is therefore unclear what the relative contributions of these kinases are to MSCI-related H2AFX phosphorylation. We observed normal γH2AFX staining patterns during leptotene in Atrflox/− males, but H2AFX phosphorylation at zygotene was dramatically reduced, consistent with ATR being the principle H2AFX kinase at this latter time point (Fig. 2A). In early pachytene Atrflox/− spermatocytes, H2AFX phosphorylation on the unsynapsed regions of the XY chromatin was also attenuated, and γH2AFX was observed only at the PAR (Fig. 2B), presumably due to the presence of residual ATR at this site (Fig. 1D). We subsequently found that the Ser1981-phosphorylated ATM antibody previously shown to exhibit XY chromatin staining (Hamer et al. 2004) gave the same localization pattern in Atm−/− mice (Supplemental Fig. 1A). Thus, although this antibody gives irradiation-dependent staining in spermatogonia and Sertoli cells (Hamer et al. 2004), the XY-staining pattern is nonspecific. We observed no localization of ATM to the XY chromatin or the PAR in either Atrflox/+ or Atrflox/− males using two additional ATM antibodies (Supplemental Fig. 1B,C). We conclude that ATR is required for the bulk of H2AFX phosphorylation during zygotene and early pachytene.
H2AFX phosphorylation at early pachytene results in meiotic silencing, which can be assayed by RNA FISH. To examine the role of ATR in silencing, we studied expression of the X-linked gene Scml2 in Atrflox/− male pachytene cells. Scml2 is silenced by MSCI, and mice defective in MSCI show inappropriate Scml2 expression at early pachytene (Wojtasz et al. 2012). We observed Scml2 expression in 97% of Atrflox/− early pachytene cells, easily identifiable by their characteristic PAR γH2AFX staining (Fig. 2C). Thus, ATR is essential for the initiation of meiotic silencing.
ATR also regulates localization of silencing factors at unsynapsed AEs
HORMAD1, HORMAD2, and BRCA1 are essential for ATR localization to unsynapsed AEs (Turner et al. 2004; Daniel et al. 2011; Wojtasz et al. 2012). Nevertheless, since the PI3K-like kinases are required for accumulation of various repair proteins at DNA DSBs in mitotic cells, we questioned whether ATR could also reciprocally regulate HORMAD1, HORMAD2, and BRCA1 localization and, as such, function in the sensing step of meiotic silencing.
We observed grossly normal HORMAD1 and HORMAD2 localization to the XY AEs in Atrflox/− males (Fig. 3A), which was confirmed quantitatively (Supplemental Fig. 1D). Interestingly, however, BRCA1 localization at the XY AEs was disrupted (Fig. 3A). Consistent with a role for ATR in regulating BRCA1 localization, we observed ectopic BRCA1 accumulation at the PAR in Atrflox/− males (Fig. 3A). We conclude that BRCA1 and ATR are interdependent in the meiotic silencing pathway.
Hop1, the yeast HORMAD1/2 ortholog, is a known phosphotarget of Mec1, the yeast ATR ortholog (Carballo et al. 2008). It has therefore been proposed that ATR phosphorylates HORMAD1/2 and that this may be essential in mediating certain HORMAD1/2 functions, including meiotic silencing (Fukuda et al. 2012). Indeed, a recent study has shown that HORMAD1 and HORMAD2 are phosphorylated, with Ser375-phosphorylated HORMAD1 (pHORMAD1Ser375) being enriched at unsynapsed AEs (Fukuda et al. 2012). We confirmed localization of pHORMAD1Ser375 to the unsynapsed XY AEs (Fig. 3B) and, using a newly synthesized antibody, found that Ser271-phosphorylated HORMAD2 (pHORMAD2Ser271) is also enriched at these sites (Fig. 3B). To test whether these SQ motif HORMAD1 and HORMAD2 modifications were ATR-dependent, we analyzed their localization in Atrflox/− males. Both phospho-epitopes were barely detectable on the XY AEs in Atrflox/− pachytene cells (Fig. 3B). Consistent with ATR being the principal HORMAD1Ser375/HORMAD2Ser271 kinase, we observed normal localization of both modified forms to the XY AEs in Atm−/− cells (Fig. 3B).
Next, we wished to investigate the relationship between localization of ATR and that of its cofactors, ATRIP and TOPBP1, to unsynapsed AEs. Interestingly, enrichment of both ATRIP and TOPBP1 to the XY AEs was disrupted in Atrflox/− males, and both proteins accumulated instead at the PAR (Fig. 3C). We conclude that, in addition to its role in H2AFX phosphorylation, ATR regulates the localization of multiple silencing factors at unsynapsed axes.
A positive feedback loop between ATR, MDC1, and H2AFX amplifies the silencing response
In mitotic cells, ATM, MDC1, and H2AFX participate in a positive feedback loop in which MDC1 binds phosphorylated H2AFX and subsequently recruits ATM, which catalyzes further H2AFX phosphorylation, thereby amplifying the DNA damage response (Lou et al. 2006). A recent study has found that in the absence of MDC1, spreading of ATR and γH2AFX into the chromatin of unsynapsed AEs is defective, suggesting that an analogous feedback system operates during meiotic silencing (Ichijima et al. 2011). Under this model, the loss of ATR, MDC1, or γH2AFX should affect the localization of the other two silencing factors.
To test this prediction, we analyzed MDC1 immunostaining in Atrflox/− males. MDC1 is a silencing effector and is therefore normally seen in the chromatin of the XY bivalent (Ichijima et al. 2011). As observed for γH2AFX (Fig. 2B), MDC1 localization to the XY chromatin was disrupted in the absence of ATR (Fig. 4A). We subsequently analyzed MDC1 and ATR localization in H2AFX−/− males (Fernandez-Capetillo et al. 2003). We observed defective spreading of both silencing proteins into the XY chromatin in this mutant (Fig. 4B). ATR localization to the XY axes was unaffected in H2AFX−/− males (Fig. 4B) as in MDC1−/− males (Ichijima et al. 2011), showing that neither MDC1 nor H2AFX is required for the sensing of unsynapsed chromosomes. We conclude that the effector step of meiotic silencing requires interdependence between ATR, MDC1, and H2AFX.
Finally we examined the effect of ATR loss on the localization of two other epigenetic modifications—SUMO-1 (Fig. 4C; Vigodner and Morris 2005) and ubiquitinated H2A (Fig. 4C; Baarends et al. 1999)—to the XY bivalent. SUMO-1 accumulation has been proposed to precede H2AFX phosphorylation on the sex chromosomes (Vigodner 2009; see also Ichijima et al. 2011), and H2A ubiquitination by the ligase UBR2 is thought to function independently of BRCA1/ATR in MSCI (An et al. 2010). In contrast to Atrflox/+ males, in Atrflox/− males, we did not observe enrichment of either mark at the XY bivalent during pachytene. We conclude that acquisition of both SUMO-1 and ubiquitinated H2A on unsynapsed chromosomes is ATR-dependent.
Atr is dispensable for the maintenance of meiotic silencing
In Atrflox/− males, defective H2AFX phosphorylation on the XY bivalent was a highly penetrant phenotype, affecting all early pachytene cells in testis sections and giving rise to germ cell apoptosis at stages III and IV (Fig. 1A). However, ATR localization and H2AFX phosphorylation were grossly normal during late pachytene (Fig. 1D), and germ cells from stage VII onward appeared healthy (Fig. 1A), indicating that these later cells had evaded Cre-recombinase-mediated excision. Thus, Atrflox/− males could not be used to address the role of ATR in late meiosis.
To overcome this problem, we implemented a novel meiosis-specific gene knockdown strategy that uses MSCI to silence transcription of a chosen gene in a temporally precise manner (Fig. 5A). In this approach, a bacterial artificial chromosome (BAC) containing the Atr gene was targeted to the X chromosome. This was achieved by homologous recombination in mouse XY embryonic stem (ES) cells carrying BAC acceptor sites within the Hprt1 locus (Prosser et al. 2008). Male “XAtrY” mice derived from these ES cells were then crossed onto an Atr-null background, generating complemented XAtrY−/− males whose only source of Atr originated from the X-inserted BAC. Expression of Atr from the X chromosome in XAtrY−/− embryos rescues the embryonic lethality; however, as meiotic cells undergo MSCI, the X-inserted copy of Atr is silenced, the result being that pachytene cells are Atr-null (Fig. 5A).
We generated complemented XAtrY−/− males from four independently targeted ES cell clones, which gave equivalent results. In control Atr+/− males, Atr expression, assayed by RNA FISH, was observed throughout pachytene, but in XAtrY−/− males, the X-inserted copy of Atr was silenced in early pachytene cells and remained inactive thereafter (Fig. 5B). As a result, a dramatic reduction in the level of ATR protein could be detected in XAtrY−/− relative to XY Atr+/− testes by Western blotting (Fig. 5C). We noted that in wild-type males, the majority of ATR expression occurs during late pachytene (Fig. 1C). Since Atr silencing was observed at this stage in XAtrY−/− males (Fig. 5E) but not in Atrflox/− males (Fig. 1D), total ATR levels were lower in XAtrY−/− (Fig. 5C) than in Atrflox/− testes (Fig. 1B). Thus, MSCI can be used to silence gene expression during pachytene.
To establish when during spermatogenesis in XAtrY−/− males ATR protein levels were depleted, we analyzed ATR immunostaining in surface spreads. As expected, ATR was present on the XY chromatin at the point of initiation of MSCI but was undetectable during late pachytene (Fig. 5D). Subsequent immuno-analysis of XAtrY−/− testis sections confirmed normal ATR localization to the XY chromatin during MSCI initiation; i.e., at stage I of the seminiferous cycle (Fig. 5E). However, from stage II onward, the level of ATR on the XY bivalent was diminished, and no ATR staining could be observed by stage VIII (Fig. 5E). We conclude that, in wild-type males, ATR recruitment to unsynapsed chromatin is ongoing and dynamic and that Atr expression can be disrupted by MSCI-mediated knockdown.
Despite ablation of Atr expression, testis weights in XAtrY−/− males (mean 93 ± 14 mg, n = 4 males) were similar to those of XY Atr+/− control siblings (mean 91 ± 10 mg, n = 9 males), and XAtrY−/− males were fertile, with grossly normal testis histology (Fig. 5F). Moreover, XY H2AFX phosphorylation and MSCI, assayed by Scml2 RNA FISH, were established and maintained normally in XAtrY−/− males (Fig. 5G). Interestingly, silencing factors (e.g., BRCA1, HORMAD1Ser375, and HORMAD2Ser271) localized normally at the XY AEs in late pachytene XAtrY−/− cells (Supplemental Fig. 1E) despite the absence of ATR at this stage (Fig. 5D,E). We observed no localization of ATM to the XY chromatin in late pachytene XAtrY−/− cells, suggesting that this kinase does not maintain H2AFX phosphorylation in the absence of ATR (Supplemental Fig. 1F). We conclude that ATR is dispensable for the maintenance of H2AFX phosphorylation and XY silencing and that, once established early in pachytene, meiotic silencing is remarkably stable.
Discussion
Here we demonstrate a role for ATR in the initiation of meiotic silencing. Our data show that Atr ablation cannot be compensated for by Atm and DNA-PK and are consistent with ATR being the major kinase that phosphorylates H2AFX to initiate XY inactivation. In addition, we show that ATR functions earlier in meiotic silencing by operating in conjunction with BRCA1, ATRIP, and TOPBP1 and regulating HORMAD1/2 phosphorylation at unsynapsed axes.
A recurrent theme that emerges from our work is that meiotic silencing involves a complex interplay between ATR and other silencing effectors. This can be understood in the context of a model that integrates current and existing observations with the sequential steps in the silencing process (Fig. 6). Initial sensing of unsynapsed axes during zygotene is HORMAD1-, HORMAD2-, and BRCA1-dependent but ATR-independent (Fig. 6A). This is consistent with findings in Spo11−/− mice that show that HORMAD1, HORMAD2, and BRCA1 localize along unsynapsed axes during zygotene independently of ATR accumulation (Mahadevaiah et al. 2008; Wojtasz et al. 2009). Subsequently, ATR is recruited to sites of asynapsis in a HORMAD1-, HORMAD2-, and BRCA1-dependent manner (Fig. 6B). Once recruited, ATR–ATRIP then facilitates further enrichment of BRCA1 as well as other factors involved in ATR activation; e.g., TOPBP1 and phosphorylation of HORMAD1/2. These events maintain asynapsis signaling at chromosome axes during late zygotene (Fig. 6C). Our data (Fig. 3) show that this ATR-dependent phase of silencing factor recruitment is dynamic. This flexibility may ensure that silencing factors can be rapidly evicted from AEs should homologs eventually achieve synapsis. However, if asynapsis persists at early pachytene, ATR subsequently translocates into chromatin loops of unsynapsed regions, leading to induction of repressive post-translational modifications (e.g., γH2AFX) and irreversible gene silencing over many megabases (Fig. 6D). Thus, ATR can be viewed as an adaptor protein, linking the sensor and effector arms of the silencing response. Once established, repressive chromatin marks do not require continued ATR activity for their maintenance. Likewise, at this stage, the maintenance of silencing factors at unsynapsed AEs also becomes ATR-independent (Fig. 6D).
In this study, we also present a novel genetic strategy whereby the expression of a gene of interest can be silenced in the germline using MSCI. We used this to demonstrate that loss of ATR after the initiation of XY inactivation does not impair H2AFX phosphorylation or the maintenance of silencing. Our data suggest that H2AFX phosphorylation is not an ongoing process but is restricted to early in pachytene, a property that contrasts with the more dynamic behavior of other histone modifications (e.g., H3K9me3) during the maintenance phase of MSCI (van der Heijden et al. 2007). Notably, the X-targeting strategy described here leads to dramatic and sustained depletion of gene expression. It may therefore prove superior to Cre recombinase-based approaches, which exhibit mosaic Cre-expression and varying excision efficiencies, in interrogating the functions of genes expressed during late prophase or spermiogenesis.
Curiously, the residual ATR protein that we observed in early pachytene Atrflox/− cells localized to the PAR. This finding is surprising because synapsed regions are normally devoid of ATR staining and because ATR was not observed on other synapsed bivalents in this model (Fig. 1D). Although currently difficult to reconcile, this abnormal localization may hint at defects in synapsis and/or recombination in Atrflox/− meiosis that are more pronounced at the PAR. The PAR exhibits unusual properties in meiosis, including delayed DNA DSB formation and synapsis (Kauppi et al. 2011). Work in other organisms has shown that ATR does indeed regulate synapsis and recombination as well as other fundamental aspects of meiosis, including interhomolog bias, crossover formation, and checkpoint responses (Carballo and Cha 2007). Although dispensable for the maintenance of H2AFX phosphorylation, the persistent ATR observed on unsynapsed chromosomes may be related to one or more of these processes. The application of the conditional approaches for ablating Atr described here will provide a unique opportunity to examine whether these functions are conserved in mammals.
Materials and methods
Mice
H2afx−/− (Fernandez-Capetillo et al. 2003) and Atm−/− (Barlow et al. 1996) mice were maintained on an MF1 background and according to United Kingdom Home Office regulations. Atrflox/− Cre-ERT2 males were as described (Ruzankina et al. 2007). Targeting of the Atr BAC into the X-linked Hprt locus by recombination-mediated cassette exchange in ES cells was performed as described previously (Prosser et al. 2008). All mice used in this project were maintained according to United Kingdom Home Office regulations.
Tamoxifen treatment
Atrflox/− Cre-ERT2 males were treated with tamoxifen at doses already described (Ruzankina et al. 2007). Males culled immediately after treatment cessation did not exhibit meiotic phenotypes, while those culled 3 d after treatment cessation showed mid-pachytene arrest. This implies that ATR excision occurred during an early, premeiotic germ cell type some 7–10 d prior to mid-pachytene. This is most likely to be a late stage A spermatogonial or early intermediate spermatogonial stage. We noted that as early as 1 mo after treatment cessation, Atrflox/− Cre-ERT2 males exhibited agametic tubules resulting from spermatogonial stem cell depletion. This is consistent with previous findings (Ruzankina et al. 2007) and meant that Atrflox/− Cre-ERT2 males cannot regain fertility after tamoxifen treatment.
RNA FISH, immunofluorescence, and Western blotting
Scml2 RNA FISH was carried out with digoxigenin-labeled probes as described (Mahadevaiah et al. 2009) using BAC RP24-204O18 (CHORI). Immunofluorescence experiments on surface spread spermatocytes were carried out as described in Turner et al. (2005) with antibody dilutions for SYCP3, BRCA1, ATR, and BRCA1 described in Turner et al. (2004); HORMAD1, HORMAD2, and TOPBP1 (gift from J. Chen) described in Wojtasz et al. (2009); and Ser375-phosphorylated HORMAD1 described in Fukuda et al. (2012). The ATRIP antibody (gift from K. Cimprich), MDC1 antibody (ABDSerotec), and SUMO-1 antibody (Abcam; ab11672) were used at 1:100. ATM antibodies pS1981-ATM (Rockland), 07-1286 (Miilipore), and H-248 (Santa Cruz Biotechnology) were used at 1:50. The Ser271-phosphorylated HORMAD2 antibody was made using the peptide EEEACG-S(PO3H2)-QVQRMN to immunize two rabbits. The same peptide was used to affinity-purify antibodies from the serum of immunized rabbits. EEEACGSQVQRMN peptide-coupled affinity resin was used to deplete antibodies that recognize the nonphosphorylated form of the immunizing peptide. Testis section immunofluorescence and Western blots (with ATR and β-ACTIN antibodies used at 1:1000 and 1:50 000, respectively) were carried out as described in Hamer et al. (2004). HORMAD1 and HORMAD2 quantitation was performed as described in Mahadevaiah et al. (2008).
Microscopy
For imaging, an Olympus IX70 inverted microscope with a 100-W mercury arc lamp using a 100× 1.35 U-PLAN-APO oil immersion objective (Olympus) or a 40× objective was used. Images were captured using a computer-assisted (Deltavision), liquid-cooled CCD camera (photometrics CH350L; sensor: Kodak KAF1400, 1317 × 1035 pixels). Each channel was captured separately as a 12-bit source image, and captured images were processed using ImageJ 1.46a.
Acknowledgments
We thank Karlene Cimprich and Junjie Chen for providing the ATRIP and TOPBP1 antibodies, respectively; Grzegorz Polikiewicz for genotyping; and Paul Burgoyne and members of Turner laboratory for critical reading of the manuscript. This work was funded by the Medical Research Council (U117588498), the National Institute on Aging (2R01AG027376), the Deutsche Forschungsgemeinschaft (TO 421/3-1, 421/3-2, 421/4-1, and 421/5-1), the Wellcome Trust (WT098051), the Swedish Cancer Society, the Swedish Research Council, and the Karolinska Institutet.
Footnotes
Supplemental material is available for this article.
Article is online at http://www.genesdev.org/cgi/doi/10.1101/gad.219477.113.
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