Skip to main content
Microbiological Reviews logoLink to Microbiological Reviews
. 1993 Sep;57(3):605–622. doi: 10.1128/mr.57.3.605-622.1993

Molecular biology of the lignin-degrading basidiomycete Phanerochaete chrysosporium.

M H Gold 1, M Alic 1
PMCID: PMC372928  PMID: 8246842

Abstract

The white rot basidiomycete Phanerochaete chrysosporium completely degrades lignin and a variety of aromatic pollutants during the secondary metabolic phase of growth. Two families of secreted heme enzymes, lignin peroxidase (LiP) and manganese peroxidase (MnP), are major components of the extracellular lignin degradative system of this organism. MnP and LiP both are encoded by families of genes, and the lip genes appear to be clustered. The lip genes contain eight or nine short introns; the mnp genes contain six or seven short introns. The sequences surrounding active-site residues are conserved among LiP, MnP, cytochrome c peroxidase, and plant peroxidases. The eight LiP cysteine residues align with 8 of the 10 cysteines in MnP. LiPs are synthesized as preproenzymes with a 21-amino-acid signal sequence followed by a 6- or 7-amino-acid propeptide. MnPs have a 21- or 24-amino-acid signal sequence but apparently lack a propeptide. Both LiP and MnP are regulated at the mRNA level by nitrogen, and the various isozymes may be differentially regulated by carbon and nitrogen. MnP also is regulated at the level of gene transcription by Mn(II), the substrate for the enzyme, and by heat shock. The promoter regions of mnp genes contain multiple heat shock elements as well as sequences that are identical to the consensus metal regulatory elements found in mammalian metallothionein genes. DNA transformation systems have been developed for P. chrysosporium and are being used for studies on gene regulation and for gene replacement experiments.

Full text

PDF
605

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Akileswaran L., Alic M., Clark E. K., Hornick J. L., Gold M. H. Isolation and transformation of uracil auxotrophs of the lignin-degrading basidiomycete Phanerochaete chrysosporium. Curr Genet. 1993;23(4):351–356. doi: 10.1007/BF00310898. [DOI] [PubMed] [Google Scholar]
  2. Alic M., Gold M. H. Genetic Recombination in the Lignin-Degrading Basidiomycete Phanerochaete chrysosporium. Appl Environ Microbiol. 1985 Jul;50(1):27–30. doi: 10.1128/aem.50.1.27-30.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Alic M., Kornegay J. R., Pribnow D., Gold M. H. Transformation by Complementation of an Adenine Auxotroph of the Lignin-Degrading Basidiomycete Phanerochaete chrysosporium. Appl Environ Microbiol. 1989 Feb;55(2):406–411. doi: 10.1128/aem.55.2.406-411.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Alic M., Letzring C., Gold M. H. Mating System and Basidiospore Formation in the Lignin-Degrading Basidiomycete Phanerochaete chrysosporium. Appl Environ Microbiol. 1987 Jul;53(7):1464–1469. doi: 10.1128/aem.53.7.1464-1469.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Andersson L. A., Renganathan V., Chiu A. A., Loehr T. M., Gold M. H. Spectral characterization of diarylpropane oxygenase, a novel peroxide-dependent, lignin-degrading heme enzyme. J Biol Chem. 1985 May 25;260(10):6080–6087. [PubMed] [Google Scholar]
  6. Andrawis A., Pease E. A., Kuan I. C., Holzbaur E., Tien M. Characterization of two lignin peroxidase clones from Phanerochaete chrysosporium. Biochem Biophys Res Commun. 1989 Jul 31;162(2):673–680. doi: 10.1016/0006-291x(89)92363-2. [DOI] [PubMed] [Google Scholar]
  7. Asch D. K., Kinsey J. A. Relationship of vector insert size to homologous integration during transformation of Neurospora crassa with the cloned am (GDH) gene. Mol Gen Genet. 1990 Mar;221(1):37–43. doi: 10.1007/BF00280365. [DOI] [PubMed] [Google Scholar]
  8. Ballance D. J. Sequences important for gene expression in filamentous fungi. Yeast. 1986 Dec;2(4):229–236. doi: 10.1002/yea.320020404. [DOI] [PubMed] [Google Scholar]
  9. Banci L., Bertini I., Turano P., Tien M., Kirk T. K. Proton NMR investigation into the basis for the relatively high redox potential of lignin peroxidase. Proc Natl Acad Sci U S A. 1991 Aug 15;88(16):6956–6960. doi: 10.1073/pnas.88.16.6956. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Barr P. J. Mammalian subtilisins: the long-sought dibasic processing endoproteases. Cell. 1991 Jul 12;66(1):1–3. doi: 10.1016/0092-8674(91)90129-m. [DOI] [PubMed] [Google Scholar]
  11. Binninger D. M., Le Chevanton L., Skrzynia C., Shubkin C. D., Pukkila P. J. Targeted transformation in Coprinus cinereus. Mol Gen Genet. 1991 Jun;227(2):245–251. doi: 10.1007/BF00259677. [DOI] [PubMed] [Google Scholar]
  12. Black A. K., Reddy C. A. Cloning and characterization of a lignin peroxidase gene from the white-rot fungus Trametes versicolor. Biochem Biophys Res Commun. 1991 Aug 30;179(1):428–435. doi: 10.1016/0006-291x(91)91388-s. [DOI] [PubMed] [Google Scholar]
  13. Boeke J. D., LaCroute F., Fink G. R. A positive selection for mutants lacking orotidine-5'-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance. Mol Gen Genet. 1984;197(2):345–346. doi: 10.1007/BF00330984. [DOI] [PubMed] [Google Scholar]
  14. Bonnarme P., Jeffries T. W. Mn(II) Regulation of Lignin Peroxidases and Manganese-Dependent Peroxidases from Lignin-Degrading White Rot Fungi. Appl Environ Microbiol. 1990 Jan;56(1):210–217. doi: 10.1128/aem.56.1.210-217.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Boominathan K., Dass S. B., Randall T. A., Kelley R. L., Reddy C. A. Lignin peroxidase-negative mutant of the white-rot basidiomycete Phanerochaete chrysosporium. J Bacteriol. 1990 Jan;172(1):260–265. doi: 10.1128/jb.172.1.260-265.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Boominathan K., Dass S. B., Randall T. A., Reddy C. A. Nitrogen-deregulated mutants of Phanerochaete chrysosporium--a lignin-degrading basidiomycete. Arch Microbiol. 1990;153(6):521–527. doi: 10.1007/BF00245259. [DOI] [PubMed] [Google Scholar]
  17. Boominathan K., Reddy C. A. cAMP-mediated differential regulation of lignin peroxidase and manganese-dependent peroxidase production in the white-rot basidiomycete Phanerochaete chrysosporium. Proc Natl Acad Sci U S A. 1992 Jun 15;89(12):5586–5590. doi: 10.1073/pnas.89.12.5586. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Bourbonnais R., Paice M. G. Veratryl alcohol oxidases from the lignin-degrading basidiomycete Pleurotus sajor-caju. Biochem J. 1988 Oct 15;255(2):445–450. doi: 10.1042/bj2550445. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Broda P., Sims P. F., Mason J. C. Lignin biodegradation: a molecular biological approach. Essays Biochem. 1989;24:82–114. [PubMed] [Google Scholar]
  20. Brown A., Sims P. F., Raeder U., Broda P. Multiple ligninase-related genes from Phanerochaete chrysosporium. Gene. 1988 Dec 15;73(1):77–85. doi: 10.1016/0378-1119(88)90314-9. [DOI] [PubMed] [Google Scholar]
  21. Brown J. A., Alic M., Gold M. H. Manganese peroxidase gene transcription in Phanerochaete chrysosporium: activation by manganese. J Bacteriol. 1991 Jul;173(13):4101–4106. doi: 10.1128/jb.173.13.4101-4106.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Brown J. A., Glenn J. K., Gold M. H. Manganese regulates expression of manganese peroxidase by Phanerochaete chrysosporium. J Bacteriol. 1990 Jun;172(6):3125–3130. doi: 10.1128/jb.172.6.3125-3130.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Bégueret J., Razanamparany V., Perrot M., Barreau C. Cloning gene ura5 for the orotidylic acid pyrophosphorylase of the filamentous fungus Podospora anserina: transformation of protoplasts. Gene. 1984 Dec;32(3):487–492. doi: 10.1016/0378-1119(84)90023-4. [DOI] [PubMed] [Google Scholar]
  24. Covert S. F., Vanden Wymelenberg A., Cullen D. Structure, organization, and transcription of a cellobiohydrolase gene cluster from Phanerochaete chrysosporium. Appl Environ Microbiol. 1992 Jul;58(7):2168–2175. doi: 10.1128/aem.58.7.2168-2175.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Crawford R. L., Robinson L. E., Foster R. D. Polyguaiacol: a useful model polymer for lignin biodegradation research. Appl Environ Microbiol. 1981 May;41(5):1112–1116. doi: 10.1128/aem.41.5.1112-1116.1981. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Culotta V. C., Hamer D. H. Fine mapping of a mouse metallothionein gene metal response element. Mol Cell Biol. 1989 Mar;9(3):1376–1380. doi: 10.1128/mcb.9.3.1376. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Dass S. B., Reddy C. A. Characterization of extracellular peroxidases produced by acetate-buffered cultures of the lignin-degrading basidiomycete Phanerochaete chrysosporium. FEMS Microbiol Lett. 1990 Jun 1;57(3):221–224. doi: 10.1111/j.1574-6968.1990.tb04233.x. [DOI] [PubMed] [Google Scholar]
  28. Dosoretz C. G., Dass S. B., Reddy C. A., Grethlein H. E. Protease-mediated degradation of lignin peroxidase in liquid cultures of Phanerochaete chrysosporium. Appl Environ Microbiol. 1990 Nov;56(11):3429–3434. doi: 10.1128/aem.56.11.3429-3434.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Edwards S. L., Poulos T. L., Kraut J. The crystal structure of fluoride-inhibited cytochrome c peroxidase. J Biol Chem. 1984 Nov 10;259(21):12984–12988. [PubMed] [Google Scholar]
  30. Edwards S. L., Raag R., Wariishi H., Gold M. H., Poulos T. L. Crystal structure of lignin peroxidase. Proc Natl Acad Sci U S A. 1993 Jan 15;90(2):750–754. doi: 10.1073/pnas.90.2.750. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. Elferink C. J., Gasiewicz T. A., Whitlock J. P., Jr Protein-DNA interactions at a dioxin-responsive enhancer. Evidence that the transformed Ah receptor is heteromeric. J Biol Chem. 1990 Nov 25;265(33):20708–20712. [PubMed] [Google Scholar]
  32. Faison B. D., Kirk T. K., Farrell R. L. Role of Veratryl Alcohol in Regulating Ligninase Activity in Phanerochaete chrysosporium. Appl Environ Microbiol. 1986 Aug;52(2):251–254. doi: 10.1128/aem.52.2.251-254.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Finzel B. C., Poulos T. L., Kraut J. Crystal structure of yeast cytochrome c peroxidase refined at 1.7-A resolution. J Biol Chem. 1984 Nov 10;259(21):13027–13036. [PubMed] [Google Scholar]
  34. Froeliger E. H., Muñoz-Rivas A. M., Specht C. A., Ullrich R. C., Novotny C. P. The isolation of specific genes from the basidiomycete Schizophyllum commune. Curr Genet. 1987;12(7):547–554. doi: 10.1007/BF00419565. [DOI] [PubMed] [Google Scholar]
  35. Froeliger E. H., Ullrich R. C., Novotny C. P. Sequence analysis of the URA1 gene encoding orotidine-5'-monophosphate decarboxylase of Schizophyllum commune. Gene. 1989 Nov 30;83(2):387–393. doi: 10.1016/0378-1119(89)90127-3. [DOI] [PubMed] [Google Scholar]
  36. Fujisawa-Sehara A., Yamane M., Fujii-Kuriyama Y. A DNA-binding factor specific for xenobiotic responsive elements of P-450c gene exists as a cryptic form in cytoplasm: its possible translocation to nucleus. Proc Natl Acad Sci U S A. 1988 Aug;85(16):5859–5863. doi: 10.1073/pnas.85.16.5859. [DOI] [PMC free article] [PubMed] [Google Scholar]
  37. Fuller R. S., Sterne R. E., Thorner J. Enzymes required for yeast prohormone processing. Annu Rev Physiol. 1988;50:345–362. doi: 10.1146/annurev.ph.50.030188.002021. [DOI] [PubMed] [Google Scholar]
  38. Fürst P., Hu S., Hackett R., Hamer D. Copper activates metallothionein gene transcription by altering the conformation of a specific DNA binding protein. Cell. 1988 Nov 18;55(4):705–717. doi: 10.1016/0092-8674(88)90229-2. [DOI] [PubMed] [Google Scholar]
  39. Gaskell J., Dieperink E., Cullen D. Genomic organization of lignin peroxidase genes of Phanerochaete chrysosporium. Nucleic Acids Res. 1991 Feb 11;19(3):599–603. doi: 10.1093/nar/19.3.599. [DOI] [PMC free article] [PubMed] [Google Scholar]
  40. Gaskell J., Vanden Wymelenberg A., Stewart P., Cullen D. Method to identify specific alleles of a Phanerochaete chrysosporium gene encoding lignin peroxidase. Appl Environ Microbiol. 1992 Apr;58(4):1379–1381. doi: 10.1128/aem.58.4.1379-1381.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  41. Glenn J. K., Akileswaran L., Gold M. H. Mn(II) oxidation is the principal function of the extracellular Mn-peroxidase from Phanerochaete chrysosporium. Arch Biochem Biophys. 1986 Dec;251(2):688–696. doi: 10.1016/0003-9861(86)90378-4. [DOI] [PubMed] [Google Scholar]
  42. Glenn J. K., Gold M. H. Decolorization of Several Polymeric Dyes by the Lignin-Degrading Basidiomycete Phanerochaete chrysosporium. Appl Environ Microbiol. 1983 Jun;45(6):1741–1747. doi: 10.1128/aem.45.6.1741-1747.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  43. Glenn J. K., Gold M. H. Purification and characterization of an extracellular Mn(II)-dependent peroxidase from the lignin-degrading basidiomycete, Phanerochaete chrysosporium. Arch Biochem Biophys. 1985 Nov 1;242(2):329–341. doi: 10.1016/0003-9861(85)90217-6. [DOI] [PubMed] [Google Scholar]
  44. Glenn J. K., Morgan M. A., Mayfield M. B., Kuwahara M., Gold M. H. An extracellular H2O2-requiring enzyme preparation involved in lignin biodegradation by the white rot basidiomycete Phanerochaete chrysosporium. Biochem Biophys Res Commun. 1983 Aug 12;114(3):1077–1083. doi: 10.1016/0006-291x(83)90672-1. [DOI] [PubMed] [Google Scholar]
  45. Glumoff T., Harvey P. J., Molinari S., Goble M., Frank G., Palmer J. M., Smit J. D., Leisola M. S. Lignin peroxidase from Phanerochaete chrysosporium. Molecular and kinetic characterization of isozymes. Eur J Biochem. 1990 Feb 14;187(3):515–520. doi: 10.1111/j.1432-1033.1990.tb15333.x. [DOI] [PubMed] [Google Scholar]
  46. Godfrey B. J., Mayfield M. B., Brown J. A., Gold M. H. Characterization of a gene encoding a manganese peroxidase from Phanerochaete chrysosporium. Gene. 1990 Sep 1;93(1):119–124. doi: 10.1016/0378-1119(90)90144-g. [DOI] [PubMed] [Google Scholar]
  47. Gold M. H., Cheng T. M., Alic M. Formation, Fusion, and Regeneration of Protoplasts from Wild-Type and Auxotrophic Strains of the White Rot Basidiomycete Phanerochaete chrysosporium. Appl Environ Microbiol. 1983 Jul;46(1):260–263. doi: 10.1128/aem.46.1.260-263.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  48. Gold M. H., Cheng T. M., Mayfield M. B. Isolation and Complementation Studies of Auxotrophic Mutants of the Lignin-Degrading Basidiomycete Phanerochaete chrysosporium. Appl Environ Microbiol. 1982 Oct;44(4):996–1000. doi: 10.1128/aem.44.4.996-1000.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]
  49. Greene J. M., Larin Z., Taylor I. C., Prentice H., Gwinn K. A., Kingston R. E. Multiple basal elements of a human hsp70 promoter function differently in human and rodent cell lines. Mol Cell Biol. 1987 Oct;7(10):3646–3655. doi: 10.1128/mcb.7.10.3646. [DOI] [PMC free article] [PubMed] [Google Scholar]
  50. Grindley N. D., Joyce C. M. Genetic and DNA sequence analysis of the kanamycin resistance transposon Tn903. Proc Natl Acad Sci U S A. 1980 Dec;77(12):7176–7180. doi: 10.1073/pnas.77.12.7176. [DOI] [PMC free article] [PubMed] [Google Scholar]
  51. Hammel K. E., Green B., Gai W. Z. Ring fission of anthracene by a eukaryote. Proc Natl Acad Sci U S A. 1991 Dec 1;88(23):10605–10608. doi: 10.1073/pnas.88.23.10605. [DOI] [PMC free article] [PubMed] [Google Scholar]
  52. Harmsen M. C., Schuren F. H., Moukha S. M., van Zuilen C. M., Punt P. J., Wessels J. G. Sequence analysis of the glyceraldehyde-3-phosphate dehydrogenase genes from the basidiomycetes Schizophyllum commune, Phanerochaete chrysosporium and Agaricus bisporus. Curr Genet. 1992 Dec;22(6):447–454. doi: 10.1007/BF00326409. [DOI] [PubMed] [Google Scholar]
  53. Henrissat B., Saloheimo M., Lavaitte S., Knowles J. K. Structural homology among the peroxidase enzyme family revealed by hydrophobic cluster analysis. Proteins. 1990;8(3):251–257. doi: 10.1002/prot.340080307. [DOI] [PubMed] [Google Scholar]
  54. Holzbaur E. L., Andrawis A., Tien M. Structure and regulation of a lignin peroxidase gene from Phanerochaete chrysosporium. Biochem Biophys Res Commun. 1988 Sep 15;155(2):626–633. doi: 10.1016/s0006-291x(88)80541-2. [DOI] [PubMed] [Google Scholar]
  55. Hu S., Fürst P., Hamer D. The DNA and Cu binding functions of ACE1 are interdigitated within a single domain. New Biol. 1990 Jun;2(6):544–555. [PubMed] [Google Scholar]
  56. Huoponen K., Ollikka P., Kälin M., Walther I., Mäntsälä P., Reiser J. Characterization of lignin peroxidase-encoding genes from lignin-degrading basidiomycetes. Gene. 1990 Apr 30;89(1):145–150. doi: 10.1016/0378-1119(90)90218-g. [DOI] [PubMed] [Google Scholar]
  57. Imagawa M., Chiu R., Karin M. Transcription factor AP-2 mediates induction by two different signal-transduction pathways: protein kinase C and cAMP. Cell. 1987 Oct 23;51(2):251–260. doi: 10.1016/0092-8674(87)90152-8. [DOI] [PubMed] [Google Scholar]
  58. Imbert J., Culotta V., Fürst P., Gedamu L., Hamer D. Regulation of metallothionein gene transcription by metals. Adv Inorg Biochem. 1990;8:139–164. [PubMed] [Google Scholar]
  59. James C. M., Felipe M. S., Sims P. F., Broda P. Expression of a single lignin peroxidase-encoding gene in Phanerochaete chrysosporium strain ME446. Gene. 1992 May 15;114(2):217–222. doi: 10.1016/0378-1119(92)90577-c. [DOI] [PubMed] [Google Scholar]
  60. Johnson T. M., Li J. K. Heterologous expression and characterization of an active lignin peroxidase from Phanerochaete chrysosporium using recombinant baculovirus. Arch Biochem Biophys. 1991 Dec;291(2):371–378. doi: 10.1016/0003-9861(91)90148-c. [DOI] [PubMed] [Google Scholar]
  61. Kaput J., Goltz S., Blobel G. Nucleotide sequence of the yeast nuclear gene for cytochrome c peroxidase precursor. Functional implications of the pre sequence for protein transport into mitochondria. J Biol Chem. 1982 Dec 25;257(24):15054–15058. [PubMed] [Google Scholar]
  62. Kelley R. L., Reddy C. A. Purification and characterization of glucose oxidase from ligninolytic cultures of Phanerochaete chrysosporium. J Bacteriol. 1986 Apr;166(1):269–274. doi: 10.1128/jb.166.1.269-274.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  63. Kersten P. J., Kirk T. K. Involvement of a new enzyme, glyoxal oxidase, in extracellular H2O2 production by Phanerochaete chrysosporium. J Bacteriol. 1987 May;169(5):2195–2201. doi: 10.1128/jb.169.5.2195-2201.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  64. Keyser P., Kirk T. K., Zeikus J. G. Ligninolytic enzyme system of Phanaerochaete chrysosporium: synthesized in the absence of lignin in response to nitrogen starvation. J Bacteriol. 1978 Sep;135(3):790–797. doi: 10.1128/jb.135.3.790-797.1978. [DOI] [PMC free article] [PubMed] [Google Scholar]
  65. Kimura Y., Asada Y., Kuwahara M. Screening of basidiomycetes for lignin peroxidase genes using a DNA probe. Appl Microbiol Biotechnol. 1990 Jan;32(4):436–442. doi: 10.1007/BF00903779. [DOI] [PubMed] [Google Scholar]
  66. Kirk T. K., Farrell R. L. Enzymatic "combustion": the microbial degradation of lignin. Annu Rev Microbiol. 1987;41:465–505. doi: 10.1146/annurev.mi.41.100187.002341. [DOI] [PubMed] [Google Scholar]
  67. Klionsky D. J., Banta L. M., Emr S. D. Intracellular sorting and processing of a yeast vacuolar hydrolase: proteinase A propeptide contains vacuolar targeting information. Mol Cell Biol. 1988 May;8(5):2105–2116. doi: 10.1128/mcb.8.5.2105. [DOI] [PMC free article] [PubMed] [Google Scholar]
  68. Kornfeld R., Kornfeld S. Assembly of asparagine-linked oligosaccharides. Annu Rev Biochem. 1985;54:631–664. doi: 10.1146/annurev.bi.54.070185.003215. [DOI] [PubMed] [Google Scholar]
  69. Kozak M. Comparison of initiation of protein synthesis in procaryotes, eucaryotes, and organelles. Microbiol Rev. 1983 Mar;47(1):1–45. doi: 10.1128/mr.47.1.1-45.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  70. Krejcí R., Homolka L. Genetic Mapping in the Lignin-Degrading Basidiomycete Phanerochaete chrysosporium. Appl Environ Microbiol. 1991 Jan;57(1):151–156. doi: 10.1128/aem.57.1.151-156.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  71. Kuan I. C., Tien M. Phosphorylation of lignin peroxidases from Phanerochaete chrysosporium. Identification of mannose 6-phosphate. J Biol Chem. 1989 Dec 5;264(34):20350–20355. [PubMed] [Google Scholar]
  72. Lackner R., Srebotnik E., Messner K. Oxidative degradation of high molecular weight chlorolignin by manganese peroxidase of Phanerochaete chrysosporium. Biochem Biophys Res Commun. 1991 Aug 15;178(3):1092–1098. doi: 10.1016/0006-291x(91)91004-v. [DOI] [PubMed] [Google Scholar]
  73. Leisola M. S., Kozulic B., Meussdoerffer F., Fiechter A. Homology among multiple extracellular peroxidases from Phanerochaete chrysosporium. J Biol Chem. 1987 Jan 5;262(1):419–424. [PubMed] [Google Scholar]
  74. Lin Y. S., Green M. R. Interaction of a common cellular transcription factor, ATF, with regulatory elements in both E1a- and cyclic AMP-inducible promoters. Proc Natl Acad Sci U S A. 1988 May;85(10):3396–3400. doi: 10.1073/pnas.85.10.3396. [DOI] [PMC free article] [PubMed] [Google Scholar]
  75. Lindquist S. The heat-shock response. Annu Rev Biochem. 1986;55:1151–1191. doi: 10.1146/annurev.bi.55.070186.005443. [DOI] [PubMed] [Google Scholar]
  76. MacDonald M. J., Paterson A., Broda P. Possible relationship between cyclic AMP and idiophasic metabolism in the white rot fungus Phanerochaete chrysosporium. J Bacteriol. 1984 Oct;160(1):470–472. doi: 10.1128/jb.160.1.470-472.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
  77. Marquez L., Wariishi H., Dunford H. B., Gold M. H. Spectroscopic and kinetic properties of the oxidized intermediates of lignin peroxidase from Phanerochaete chrysosporium. J Biol Chem. 1988 Aug 5;263(22):10549–10552. [PubMed] [Google Scholar]
  78. Mellon F. M., Casselton L. A. Transformation as a method of increasing gene copy number and gene expression in the basidiomycete fungus Coprinus cinereus. Curr Genet. 1988 Nov;14(5):451–456. doi: 10.1007/BF00521268. [DOI] [PubMed] [Google Scholar]
  79. Miller B. L., Miller K. Y., Roberti K. A., Timberlake W. E. Position-dependent and -independent mechanisms regulate cell-specific expression of the SpoC1 gene cluster of Aspergillus nidulans. Mol Cell Biol. 1987 Jan;7(1):427–434. doi: 10.1128/mcb.7.1.427. [DOI] [PMC free article] [PubMed] [Google Scholar]
  80. Mino Y., Wariishi H., Blackburn N. J., Loehr T. M., Gold M. H. Spectral characterization of manganese peroxidase, an extracellular heme enzyme from the lignin-degrading basidiomycete, Phanerochaete chrysosporium. J Biol Chem. 1988 May 25;263(15):7029–7036. [PubMed] [Google Scholar]
  81. Munoz-Rivas A., Specht C. A., Drummond B. J., Froeliger E., Novotny C. P., Ullrich R. C. Transformation of the basidiomycete, Schizophyllum commune. Mol Gen Genet. 1986 Oct;205(1):103–106. doi: 10.1007/BF02428038. [DOI] [PubMed] [Google Scholar]
  82. Müller R. M., Taguchi H., Shibahara S. Nucleotide sequence and organization of the rat heme oxygenase gene. J Biol Chem. 1987 May 15;262(14):6795–6802. [PubMed] [Google Scholar]
  83. Naidu P. S., Reddy C. A. Nucleotide sequence of a new lignin peroxidase gene GLG3 from the white-rot fungus, Phanerochaete chrysosporium. Nucleic Acids Res. 1990 Dec 11;18(23):7173–7173. doi: 10.1093/nar/18.23.7173. [DOI] [PMC free article] [PubMed] [Google Scholar]
  84. Naidu P. S., Zhang Y. Z., Reddy C. A. Characterization of a new lignin peroxidase gene (GLG6) from Phanerochaete chrysosporium. Biochem Biophys Res Commun. 1990 Dec 31;173(3):994–1000. doi: 10.1016/s0006-291x(05)80884-8. [DOI] [PubMed] [Google Scholar]
  85. Neurath H. Evolution of proteolytic enzymes. Science. 1984 Apr 27;224(4647):350–357. doi: 10.1126/science.6369538. [DOI] [PubMed] [Google Scholar]
  86. Orth A. B., Denny M., Tien M. Overproduction of lignin-degrading enzymes by an isolate of Phanerochaete chrysosporium. Appl Environ Microbiol. 1991 Sep;57(9):2591–2596. doi: 10.1128/aem.57.9.2591-2596.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  87. Paszczyński A., Huynh V. B., Crawford R. Comparison of ligninase-I and peroxidase-M2 from the white-rot fungus Phanerochaete chrysosporium. Arch Biochem Biophys. 1986 Feb 1;244(2):750–765. doi: 10.1016/0003-9861(86)90644-2. [DOI] [PubMed] [Google Scholar]
  88. Pease E. A., Andrawis A., Tien M. Manganese-dependent peroxidase from Phanerochaete chrysosporium. Primary structure deduced from cDNA sequence. J Biol Chem. 1989 Aug 15;264(23):13531–13535. [PubMed] [Google Scholar]
  89. Pease E. A., Aust S. D., Tien M. Heterologous expression of active manganese peroxidase from Phanerochaete chrysosporium using the baculovirus expression system. Biochem Biophys Res Commun. 1991 Sep 16;179(2):897–903. doi: 10.1016/0006-291x(91)91903-p. [DOI] [PubMed] [Google Scholar]
  90. Pease E. A., Tien M. Heterogeneity and regulation of manganese peroxidases from Phanerochaete chrysosporium. J Bacteriol. 1992 Jun;174(11):3532–3540. doi: 10.1128/jb.174.11.3532-3540.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  91. Peng M., Singh N. K., Lemke P. A. Recovery of recombinant plasmids from Pleurotus ostreatus transformants. Curr Genet. 1992 Jul;22(1):53–59. doi: 10.1007/BF00351742. [DOI] [PubMed] [Google Scholar]
  92. Poulos T. L., Kraut J. The stereochemistry of peroxidase catalysis. J Biol Chem. 1980 Sep 10;255(17):8199–8205. [PubMed] [Google Scholar]
  93. Pribnow D., Mayfield M. B., Nipper V. J., Brown J. A., Gold M. H. Characterization of a cDNA encoding a manganese peroxidase, from the lignin-degrading basidiomycete Phanerochaete chrysosporium. J Biol Chem. 1989 Mar 25;264(9):5036–5040. [PubMed] [Google Scholar]
  94. Punt P. J., Dingemanse M. A., Jacobs-Meijsing B. J., Pouwels P. H., van den Hondel C. A. Isolation and characterization of the glyceraldehyde-3-phosphate dehydrogenase gene of Aspergillus nidulans. Gene. 1988 Sep 15;69(1):49–57. doi: 10.1016/0378-1119(88)90377-0. [DOI] [PubMed] [Google Scholar]
  95. Périé F. H., Gold M. H. Manganese regulation of manganese peroxidase expression and lignin degradation by the white rot fungus Dichomitus squalens. Appl Environ Microbiol. 1991 Aug;57(8):2240–2245. doi: 10.1128/aem.57.8.2240-2245.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  96. Raeder U., Broda P. Meiotic segregation analysis of restriction site polymorphisms allows rapid genetic mapping. EMBO J. 1986 Jun;5(6):1125–1127. doi: 10.1002/j.1460-2075.1986.tb04336.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  97. Raeder U., Thompson W., Broda P. Genetic factors influencing lignin peroxidase activity in Phanerochaete chrysosporium ME446. Mol Microbiol. 1989 Jul;3(7):919–924. doi: 10.1111/j.1365-2958.1989.tb00241.x. [DOI] [PubMed] [Google Scholar]
  98. Raeder U., Thompson W., Broda P. RFLP-based genetic map of Phanerochaete chrysosporium ME446: lignin peroxidase genes occur in clusters. Mol Microbiol. 1989 Jul;3(7):911–918. doi: 10.1111/j.1365-2958.1989.tb00240.x. [DOI] [PubMed] [Google Scholar]
  99. Ralston D. M., O'Halloran T. V. Metalloregulatory proteins and molecular mechanisms of heavy metal signal transduction. Adv Inorg Biochem. 1990;8:1–31. [PubMed] [Google Scholar]
  100. Randall T. A., Reddy C. A. The nature of extra-chromosomal maintenance of transforming plasmids in the filamentous basidiomycete Phanerochaete chrysosporium. Curr Genet. 1992 Mar;21(3):255–260. doi: 10.1007/BF00336850. [DOI] [PubMed] [Google Scholar]
  101. Randall T., Rao T. R., Reddy C. A. Use of a shuttle vector for the transformation of the white rot basidiomycete, Phanerochaete chrysosporium. Biochem Biophys Res Commun. 1989 Jun 15;161(2):720–725. doi: 10.1016/0006-291x(89)92659-4. [DOI] [PubMed] [Google Scholar]
  102. Randall T., Reddy C. A. An improved transformation vector for the lignin-degrading white rot basidiomycete Phanerochaete chrysosporium. Gene. 1991 Jul 15;103(1):125–130. doi: 10.1016/0378-1119(91)90403-x. [DOI] [PubMed] [Google Scholar]
  103. Randall T., Reddy C. A., Boominathan K. A novel extrachromosomally maintained transformation vector for the lignin-degrading basidiomycete Phanerochaete chrysosporium. J Bacteriol. 1991 Jan;173(2):776–782. doi: 10.1128/jb.173.2.776-782.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  104. Rao T. R., Reddy C. A. DNA sequences from a ligninolytic filamentous fungus Phanerochaete chrysosporium capable of autonomous replication in yeast. Biochem Biophys Res Commun. 1984 Feb 14;118(3):821–827. doi: 10.1016/0006-291x(84)91468-2. [DOI] [PubMed] [Google Scholar]
  105. Renganathan V., Miki K., Gold M. H. Multiple molecular forms of diarylpropane oxygenase, an H2O2-requiring, lignin-degrading enzyme from Phanerochaete chrysosporium. Arch Biochem Biophys. 1985 Aug 15;241(1):304–314. doi: 10.1016/0003-9861(85)90387-x. [DOI] [PubMed] [Google Scholar]
  106. Ritch T. G., Jr, Gold M. H. Characterization of a highly expressed lignin peroxidase-encoding gene from the basidiomycete Phanerochaete chrysosporium. Gene. 1992 Sep 1;118(1):73–80. doi: 10.1016/0378-1119(92)90250-s. [DOI] [PubMed] [Google Scholar]
  107. Ritch T. G., Jr, Nipper V. J., Akileswaran L., Smith A. J., Pribnow D. G., Gold M. H. Lignin peroxidase from the basidiomycete Phanerochaete chrysosporium is synthesized as a preproenzyme. Gene. 1991 Oct 30;107(1):119–126. doi: 10.1016/0378-1119(91)90304-t. [DOI] [PubMed] [Google Scholar]
  108. Roberts E., Kolattukudy P. E. Molecular cloning, nucleotide sequence, and abscisic acid induction of a suberization-associated highly anionic peroxidase. Mol Gen Genet. 1989 Jun;217(2-3):223–232. doi: 10.1007/BF02464885. [DOI] [PubMed] [Google Scholar]
  109. Saloheimo M., Barajas V., Niku-Paavola M. L., Knowles J. K. A lignin peroxidase-encoding cDNA from the white-rot fungus Phlebia radiata: characterization and expression in Trichoderma reesei. Gene. 1989 Dec 28;85(2):343–351. doi: 10.1016/0378-1119(89)90427-7. [DOI] [PubMed] [Google Scholar]
  110. Schalch H., Gaskell J., Smith T. L., Cullen D. Molecular cloning and sequences of lignin peroxidase genes of Phanerochaete chrysosporium. Mol Cell Biol. 1989 Jun;9(6):2743–2747. doi: 10.1128/mcb.9.6.2743. [DOI] [PMC free article] [PubMed] [Google Scholar]
  111. Schrank A., Tempelaars C., Sims P. F., Oliver S. G., Broda P. The trpC gene of Phanerochaete chrysosporium is unique in containing an intron but nevertheless maintains the order of functional domains seen in other fungi. Mol Microbiol. 1991 Feb;5(2):467–476. doi: 10.1111/j.1365-2958.1991.tb02130.x. [DOI] [PubMed] [Google Scholar]
  112. Scott R. E., Jones A., Gaucher G. M. Manganese and antibiotic biosynthesis. III. The site of manganese control of patulin production in Penicillium urticae. Can J Microbiol. 1986 Mar;32(3):273–279. doi: 10.1139/m86-053. [DOI] [PubMed] [Google Scholar]
  113. Silar P., Butler G., Thiele D. J. Heat shock transcription factor activates transcription of the yeast metallothionein gene. Mol Cell Biol. 1991 Mar;11(3):1232–1238. doi: 10.1128/mcb.11.3.1232. [DOI] [PMC free article] [PubMed] [Google Scholar]
  114. Sims P., James C., Broda P. The identification, molecular cloning and characterisation of a gene from Phanerochaete chrysosporium that shows strong homology to the exo-cellobiohydrolase I gene from Trichoderma reesei. Gene. 1988 Dec 30;74(2):411–422. doi: 10.1016/0378-1119(88)90174-6. [DOI] [PubMed] [Google Scholar]
  115. Smith T. L., Schalch H., Gaskell J., Covert S., Cullen D. Nucleotide sequence of a ligninase gene from Phanerochaete chrysosporium. Nucleic Acids Res. 1988 Feb 11;16(3):1219–1219. doi: 10.1093/nar/16.3.1219. [DOI] [PMC free article] [PubMed] [Google Scholar]
  116. Stewart P., Kersten P., Vanden Wymelenberg A., Gaskell J., Cullen D. Lignin peroxidase gene family of Phanerochaete chrysosporium: complex regulation by carbon and nitrogen limitation and identification of a second dimorphic chromosome. J Bacteriol. 1992 Aug;174(15):5036–5042. doi: 10.1128/jb.174.15.5036-5042.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  117. Tien M., Kirk T. K., Bull C., Fee J. A. Steady-state and transient-state kinetic studies on the oxidation of 3,4-dimethoxybenzyl alcohol catalyzed by the ligninase of Phanerocheate chrysosporium Burds. J Biol Chem. 1986 Feb 5;261(4):1687–1693. [PubMed] [Google Scholar]
  118. Tien M., Kirk T. K. Lignin-Degrading Enzyme from the Hymenomycete Phanerochaete chrysosporium Burds. Science. 1983 Aug 12;221(4611):661–663. doi: 10.1126/science.221.4611.661. [DOI] [PubMed] [Google Scholar]
  119. Tien M., Myer S. B. Selection and characterization of mutants of Phanerochaete chrysosporium exhibiting ligninolytic activity under nutrient-rich conditions. Appl Environ Microbiol. 1990 Aug;56(8):2540–2544. doi: 10.1128/aem.56.8.2540-2544.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  120. Tien M., Tu C. P. Cloning and sequencing of a cDNA for a ligninase from Phanerochaete chrysosporium. Nature. 1987 Apr 2;326(6112):520–523. doi: 10.1038/326520a0. [DOI] [PubMed] [Google Scholar]
  121. Tonon F., Odier E. Influence of Veratryl Alcohol and Hydrogen Peroxide on Ligninase Activity and Ligninase Production by Phanerochaete chrysosporium. Appl Environ Microbiol. 1988 Feb;54(2):466–472. doi: 10.1128/aem.54.2.466-472.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  122. Valli K., Brock B. J., Joshi D. K., Gold M. H. Degradation of 2,4-dinitrotoluene by the lignin-degrading fungus Phanerochaete chrysosporium. Appl Environ Microbiol. 1992 Jan;58(1):221–228. doi: 10.1128/aem.58.1.221-228.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  123. Valli K., Gold M. H. Degradation of 2,4-dichlorophenol by the lignin-degrading fungus Phanerochaete chrysosporium. J Bacteriol. 1991 Jan;173(1):345–352. doi: 10.1128/jb.173.1.345-352.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  124. Valli K., Wariishi H., Gold M. H. Degradation of 2,7-dichlorodibenzo-p-dioxin by the lignin-degrading basidiomycete Phanerochaete chrysosporium. J Bacteriol. 1992 Apr;174(7):2131–2137. doi: 10.1128/jb.174.7.2131-2137.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  125. Valli K., Wariishi H., Gold M. H. Oxidation of monomethoxylated aromatic compounds by lignin peroxidase: role of veratryl alcohol in lignin biodegradation. Biochemistry. 1990 Sep 18;29(37):8535–8539. doi: 10.1021/bi00489a005. [DOI] [PubMed] [Google Scholar]
  126. Walther I., Kälin M., Reiser J., Suter F., Fritsche B., Saloheimo M., Leisola M., Teeri T., Knowles J. K., Fiechter A. Molecular analysis of a Phanerochaete chrysosporium lignin peroxidase gene. Gene. 1988 Oct 15;70(1):127–137. doi: 10.1016/0378-1119(88)90111-4. [DOI] [PubMed] [Google Scholar]
  127. Wariishi H., Akileswaran L., Gold M. H. Manganese peroxidase from the basidiomycete Phanerochaete chrysosporium: spectral characterization of the oxidized states and the catalytic cycle. Biochemistry. 1988 Jul 12;27(14):5365–5370. doi: 10.1021/bi00414a061. [DOI] [PubMed] [Google Scholar]
  128. Wariishi H., Dunford H. B., MacDonald I. D., Gold M. H. Manganese peroxidase from the lignin-degrading basidiomycete Phanerochaete chrysosporium. Transient state kinetics and reaction mechanism. J Biol Chem. 1989 Feb 25;264(6):3335–3340. [PubMed] [Google Scholar]
  129. Wariishi H., Gold M. H. Lignin peroxidase compound III. Mechanism of formation and decomposition. J Biol Chem. 1990 Feb 5;265(4):2070–2077. [PubMed] [Google Scholar]
  130. Wariishi H., Valli K., Gold M. H. In vitro depolymerization of lignin by manganese peroxidase of Phanerochaete chrysosporium. Biochem Biophys Res Commun. 1991 Apr 15;176(1):269–275. doi: 10.1016/0006-291x(91)90919-x. [DOI] [PubMed] [Google Scholar]
  131. Wariishi H., Valli K., Gold M. H. Manganese(II) oxidation by manganese peroxidase from the basidiomycete Phanerochaete chrysosporium. Kinetic mechanism and role of chelators. J Biol Chem. 1992 Nov 25;267(33):23688–23695. [PubMed] [Google Scholar]
  132. Welinder K. G. Covalent structure of the glycoprotein horseradish peroxidase (EC 1.11.1.7). FEBS Lett. 1976 Dec 15;72(1):19–23. doi: 10.1016/0014-5793(76)80804-6. [DOI] [PubMed] [Google Scholar]
  133. Wingender E. Compilation of transcription regulating proteins. Nucleic Acids Res. 1988 Mar 25;16(5):1879–1902. doi: 10.1093/nar/16.5.1879. [DOI] [PMC free article] [PubMed] [Google Scholar]
  134. Wiren K. M., Potts J. T., Jr, Kronenberg H. M. Importance of the propeptide sequence of human preproparathyroid hormone for signal sequence function. J Biol Chem. 1988 Dec 25;263(36):19771–19777. [PubMed] [Google Scholar]
  135. Zhang Y. Z., Reddy C. A., Rasooly A. Cloning of several lignin peroxidase (LIP)-encoding genes: sequence analysis of the LIP6 gene from the white-rot basidiomycete, Phanerochaete chrysosporium. Gene. 1991 Jan 15;97(2):191–198. doi: 10.1016/0378-1119(91)90051-c. [DOI] [PubMed] [Google Scholar]
  136. Zhang Y. Z., Reddy C. A. Use of synthetic oligonucleotide probes for identifying ligninase cDNA clones. Methods Enzymol. 1988;161:228–237. doi: 10.1016/0076-6879(88)61024-x. [DOI] [PubMed] [Google Scholar]
  137. Zhang Y. Z., Zylstra G. J., Olsen R. H., Reddy C. A. Identification of cDNA clones for ligninase from Phanerochaete chrysosporium using synthetic oligonucleotide probes. Biochem Biophys Res Commun. 1986 Jun 13;137(2):649–656. doi: 10.1016/0006-291x(86)91127-7. [DOI] [PubMed] [Google Scholar]
  138. de Boer H. A., Zhang Y. Z., Collins C., Reddy C. A. Analysis of nucleotide sequences of two ligninase cDNAs from a white-rot filamentous fungus, Phanerochaete chrysosporium. Gene. 1987;60(1):93–102. doi: 10.1016/0378-1119(87)90217-4. [DOI] [PubMed] [Google Scholar]
  139. de Ropp J. S., La Mar G. N., Wariishi H., Gold M. H. NMR study of the active site of resting state and cyanide-inhibited lignin peroxidase from Phanerochaete chrysosporium. Comparison with horseradish peroxidase. J Biol Chem. 1991 Aug 15;266(23):15001–15008. [PubMed] [Google Scholar]
  140. von Heijne G. A new method for predicting signal sequence cleavage sites. Nucleic Acids Res. 1986 Jun 11;14(11):4683–4690. doi: 10.1093/nar/14.11.4683. [DOI] [PMC free article] [PubMed] [Google Scholar]
  141. von Heijne G. Signal sequences. The limits of variation. J Mol Biol. 1985 Jul 5;184(1):99–105. doi: 10.1016/0022-2836(85)90046-4. [DOI] [PubMed] [Google Scholar]

Articles from Microbiological Reviews are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES