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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2013 Jun 19;69(Pt 7):o1128. doi: 10.1107/S1600536813016577

3-[(5-Chloro-2-hy­droxy­benzyl­idene)amino]-2-sulfanyl­idene-1,3-thia­zolidin-4-one

Hakan Dal a,*
PMCID: PMC3770396  PMID: 24046681

Abstract

In the title compound, C10H7ClN2O2S2, the mean plane of the thioxo­thia­zolidine ring [maximum deviation = 0.032 (2) Å] is inclined to the benzene ring by 12.25 (4)°. There is a strong intra­molecular O—H⋯N hydrogen bond present. In the crystal, mol­ecules are linked via pairs of C—H⋯Cl hydrogen bonds, forming inversion dimers.

Related literature  

For general background to the chemistry, and pharmacological and biological activity of rhodanine and its derivatives, see: Raper (1985); Contello et al. (1994); Villain-Guillot et al. (2007); Yan et al. (2007); Kletzien et al. (1992). graphic file with name e-69-o1128-scheme1.jpg

Experimental  

Crystal data  

  • C10H7ClN2O2S2

  • M r = 286.77

  • Monoclinic, Inline graphic

  • a = 9.8506 (3) Å

  • b = 10.0936 (3) Å

  • c = 12.1096 (4) Å

  • β = 110.409 (2)°

  • V = 1128.45 (6) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.70 mm−1

  • T = 100 K

  • 0.37 × 0.26 × 0.11 mm

Data collection  

  • Bruker Kappa APEXII CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2005) T min = 0.783, T max = 0.927

  • 10564 measured reflections

  • 2816 independent reflections

  • 2427 reflections with I > 2σ(I)

  • R int = 0.027

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.028

  • wR(F 2) = 0.081

  • S = 1.09

  • 2816 reflections

  • 162 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.45 e Å−3

  • Δρmin = −0.31 e Å−3

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: WinGX (Farrugia, 2012) and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813016577/su2611sup1.cif

e-69-o1128-sup1.cif (15.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813016577/su2611Isup2.hkl

e-69-o1128-Isup2.hkl (135.4KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813016577/su2611Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O2—H2⋯N2 0.75 (2) 1.97 (2) 2.6291 (19) 147 (3)
C9—H9B⋯Cl1i 0.99 2.81 3.7860 (19) 169

Symmetry code: (i) Inline graphic.

Acknowledgments

The author is indebted to Anadolu University and the Medicinal Plants and Medicine Research Centre of Anadolu University, Eskişehir, Turkey, for the use of the X-ray diffractometer.

supplementary crystallographic information

Comment

Rhodanine and its derivatives are used in a variety of applications ranging from industry to biochemistry and coordination chemistry. They have wide industrial applications as brightening additives in silver electroplating, intermediates in the syntheses of dyes, extreme-pressure lubricants and antioxidants as well as pharmacological (Contello et al., 1994), and biological activities including antibacterial (Villain-Guillot et al., 2007), antiviral (Yan et al., 2007) and antidiabetical (Kletzien et al., 1992). The interesting aspect of the chemistry of these compounds is their electron donating power to metal ions, which make them strong ligands in coordination compounds (Raper, 1985). herein we report on the crystal structure of the title rhodanine derivative.

In the molecule of the title compound (Fig. 1), the bond lengths and angles are generally within normal ranges. Ring B (S1/N1/C8–C10) is planar to within 0.032 (2) Å and is inclined to the benzene ring A (C1–C6) at a dihedral angle of 12.25 (4)°. Atoms Cl1, O2 and C7 are -0.0272 (4), -0.047 (2) and 0.052 (2) Å out of the plane of ring A, while atoms O1, S2 and N2 are 0.112 (2), -0.0327 (5) and 0.024 (2) Å displaced from the mean plane of ring B. The presence of the intramolecular O—H···N hydrogen bond (Table 1) forms a non-planar six-membered ring (O2/N2/H2/C5–C7), and contributes to the stabilization of the molecule.

In the crystal, molecules are linked via a pair of C-H···Cl hydrogen bonds forming inversion dimers (Table 1).

Experimental

The title compound was prepared by the reaction of 2-hydroxy-5-chlorophenyl (0.63 g, 4 mmol) and N-amino rhodanine (0.50 g, 4 mmol) in methanol (50 ml) at room temperature. After stirring for 6 h, a fluffy yellow precipitate was obtained. The resulting crude solid was collected by filtration, dried and then purified by repeated recrystallization using methanol as solvent; yielding yellow block-like crystals.

Refinement

Atoms H2 (for OH) and H7 (for methine) were located in a difference Fourier map and refined freely. The C-bound H-atoms were positioned geometrically with C—H = 0.95 and 0.99 Å for aromatic and methylene H-atoms, respectively, and constrained to ride on their parent atoms, with Uiso(H) = 1.2 × Ueq(C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title molecule, with atom labelling. Displacement ellipsoids are drawn at the 50% probability level. The intramolecular O-H···N hydrogen bond is shown as a dashed line - see Table 1 for details.

Crystal data

C10H7ClN2O2S2 F(000) = 584
Mr = 286.77 Dx = 1.688 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 4301 reflections
a = 9.8506 (3) Å θ = 2.2–28.3°
b = 10.0936 (3) Å µ = 0.70 mm1
c = 12.1096 (4) Å T = 100 K
β = 110.409 (2)° Block, yellow
V = 1128.45 (6) Å3 0.37 × 0.26 × 0.11 mm
Z = 4

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer 2816 independent reflections
Radiation source: fine-focus sealed tube 2427 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.027
φ and ω scans θmax = 28.4°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2005) h = −13→13
Tmin = 0.783, Tmax = 0.927 k = −13→13
10564 measured reflections l = −16→16

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.028 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.081 H atoms treated by a mixture of independent and constrained refinement
S = 1.09 w = 1/[σ2(Fo2) + (0.0379P)2 + 0.6866P] where P = (Fo2 + 2Fc2)/3
2816 reflections (Δ/σ)max = 0.001
162 parameters Δρmax = 0.45 e Å3
0 restraints Δρmin = −0.31 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 −0.07187 (4) 1.08989 (5) 0.26371 (4) 0.01535 (11)
S2 −0.06151 (4) 1.23019 (5) 0.48023 (4) 0.01547 (11)
O1 0.31445 (14) 0.95179 (13) 0.40194 (11) 0.0179 (3)
O2 0.25301 (14) 1.25062 (13) 0.75822 (11) 0.0163 (3)
H2 0.221 (3) 1.231 (2) 0.695 (2) 0.032 (7)*
N1 0.15074 (15) 1.07839 (14) 0.45427 (12) 0.0117 (3)
N2 0.23170 (15) 1.11112 (15) 0.56955 (12) 0.0129 (3)
C1 0.55038 (18) 1.01067 (18) 0.80910 (14) 0.0139 (3)
H1 0.5808 0.9404 0.7710 0.017*
C2 0.63231 (17) 1.04465 (18) 0.92291 (14) 0.0133 (3)
C3 0.59104 (18) 1.14826 (18) 0.98024 (14) 0.0147 (3)
H3 0.6496 1.1723 1.0582 0.018*
C4 0.46398 (19) 1.21576 (18) 0.92266 (15) 0.0155 (3)
H4 0.4350 1.2861 0.9617 0.019*
C5 0.37768 (18) 1.18186 (18) 0.80794 (14) 0.0135 (3)
C6 0.42240 (17) 1.07939 (17) 0.74940 (14) 0.0123 (3)
C7 0.34218 (18) 1.04111 (18) 0.62815 (15) 0.0143 (3)
H7 0.378 (2) 0.966 (2) 0.5974 (19) 0.019 (5)*
C8 0.01423 (18) 1.13498 (17) 0.40910 (14) 0.0129 (3)
C9 0.07577 (19) 0.98704 (19) 0.25954 (15) 0.0164 (4)
H9A 0.0442 0.8935 0.2455 0.020*
H9B 0.1092 1.0160 0.1952 0.020*
C10 0.19599 (19) 1.00064 (17) 0.37653 (15) 0.0136 (3)
Cl1 0.79051 (4) 0.95632 (4) 0.99429 (3) 0.01531 (11)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0133 (2) 0.0190 (2) 0.0114 (2) −0.00020 (16) 0.00125 (16) −0.00067 (16)
S2 0.0143 (2) 0.0150 (2) 0.0173 (2) 0.00122 (16) 0.00585 (16) −0.00154 (16)
O1 0.0186 (6) 0.0198 (7) 0.0154 (6) 0.0049 (5) 0.0061 (5) −0.0001 (5)
O2 0.0158 (6) 0.0176 (7) 0.0128 (6) 0.0054 (5) 0.0016 (5) −0.0009 (5)
N1 0.0130 (7) 0.0106 (7) 0.0098 (6) −0.0006 (5) 0.0020 (5) −0.0005 (5)
N2 0.0131 (6) 0.0146 (8) 0.0098 (6) −0.0020 (6) 0.0025 (5) −0.0006 (5)
C1 0.0142 (8) 0.0152 (9) 0.0123 (8) 0.0004 (7) 0.0048 (6) −0.0003 (6)
C2 0.0111 (7) 0.0147 (9) 0.0126 (8) −0.0009 (6) 0.0023 (6) 0.0017 (6)
C3 0.0149 (8) 0.0172 (9) 0.0111 (7) −0.0027 (7) 0.0033 (6) −0.0020 (7)
C4 0.0165 (8) 0.0157 (9) 0.0144 (8) 0.0008 (7) 0.0054 (7) −0.0019 (7)
C5 0.0126 (7) 0.0142 (9) 0.0137 (8) 0.0002 (7) 0.0047 (6) 0.0022 (6)
C6 0.0135 (8) 0.0112 (9) 0.0119 (8) −0.0017 (6) 0.0039 (6) −0.0006 (6)
C7 0.0152 (8) 0.0138 (9) 0.0134 (8) −0.0011 (7) 0.0044 (6) −0.0004 (7)
C8 0.0126 (8) 0.0129 (8) 0.0122 (7) −0.0021 (6) 0.0030 (6) 0.0019 (6)
C9 0.0172 (8) 0.0186 (10) 0.0127 (8) 0.0002 (7) 0.0041 (7) −0.0023 (7)
C10 0.0177 (8) 0.0110 (8) 0.0126 (8) 0.0000 (7) 0.0062 (6) 0.0022 (6)
Cl1 0.01286 (19) 0.0175 (2) 0.01301 (19) 0.00297 (15) 0.00127 (15) 0.00100 (15)

Geometric parameters (Å, º)

S1—C8 1.7277 (17) C3—H3 0.9500
S1—C9 1.8018 (18) C4—C3 1.381 (2)
S2—C8 1.6341 (17) C4—C5 1.395 (2)
O1—C10 1.204 (2) C4—H4 0.9500
O2—C5 1.355 (2) C5—C6 1.409 (2)
O2—H2 0.74 (3) C7—N2 1.284 (2)
N1—N2 1.3848 (19) C7—C6 1.456 (2)
N1—C8 1.386 (2) C7—H7 0.97 (2)
N1—C10 1.412 (2) C9—C10 1.503 (2)
C1—C6 1.399 (2) C9—H9A 0.9900
C1—H1 0.9500 C9—H9B 0.9900
C2—C1 1.376 (2) Cl1—C2 1.7410 (17)
C2—C3 1.392 (2)
C8—S1—C9 93.79 (8) C4—C5—C6 119.50 (16)
C5—O2—H2 109 (2) C1—C6—C5 119.18 (15)
N2—N1—C8 115.97 (13) C1—C6—C7 117.63 (15)
N2—N1—C10 126.87 (14) C5—C6—C7 123.19 (16)
C8—N1—C10 117.03 (14) N2—C7—C6 117.94 (16)
C7—N2—N1 120.33 (15) N2—C7—H7 125.1 (13)
C2—C1—C6 120.14 (16) C6—C7—H7 116.9 (13)
C2—C1—H1 119.9 S2—C8—S1 122.68 (10)
C6—C1—H1 119.9 N1—C8—S1 110.95 (12)
C1—C2—C3 121.03 (16) N1—C8—S2 126.36 (13)
C1—C2—Cl1 118.72 (13) S1—C9—H9A 110.2
C3—C2—Cl1 120.24 (13) S1—C9—H9B 110.2
C2—C3—H3 120.3 C10—C9—S1 107.42 (12)
C4—C3—C2 119.31 (16) C10—C9—H9A 110.2
C4—C3—H3 120.3 C10—C9—H9B 110.2
C3—C4—C5 120.79 (16) H9A—C9—H9B 108.5
C3—C4—H4 119.6 O1—C10—N1 124.09 (16)
C5—C4—H4 119.6 O1—C10—C9 125.35 (16)
O2—C5—C4 117.39 (15) N1—C10—C9 110.55 (14)
O2—C5—C6 123.12 (15)
C9—S1—C8—S2 −177.82 (12) Cl1—C2—C1—C6 179.78 (13)
C9—S1—C8—N1 1.29 (13) C1—C2—C3—C4 1.5 (3)
C8—S1—C9—C10 −3.74 (13) Cl1—C2—C3—C4 −179.02 (13)
C8—N1—N2—C7 163.12 (15) C5—C4—C3—C2 −0.5 (3)
C10—N1—N2—C7 −21.1 (2) C3—C4—C5—O2 178.56 (15)
N2—N1—C8—S1 178.09 (11) C3—C4—C5—C6 −1.4 (3)
N2—N1—C8—S2 −2.8 (2) O2—C5—C6—C1 −177.81 (15)
C10—N1—C8—S1 1.86 (18) O2—C5—C6—C7 2.7 (3)
C10—N1—C8—S2 −179.07 (13) C4—C5—C6—C1 2.1 (2)
N2—N1—C10—O1 0.0 (3) C4—C5—C6—C7 −177.44 (16)
N2—N1—C10—C9 179.45 (15) C6—C7—N2—N1 −179.40 (14)
C8—N1—C10—O1 175.75 (16) N2—C7—C6—C1 −174.04 (16)
C8—N1—C10—C9 −4.8 (2) N2—C7—C6—C5 5.5 (3)
C2—C1—C6—C5 −1.1 (2) S1—C9—C10—O1 −175.28 (15)
C2—C1—C6—C7 178.51 (15) S1—C9—C10—N1 5.26 (17)
C3—C2—C1—C6 −0.8 (3)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O2—H2···N2 0.75 (2) 1.97 (2) 2.6291 (19) 147 (3)
C9—H9B···Cl1i 0.99 2.81 3.7860 (19) 169

Symmetry code: (i) −x+1, −y+2, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SU2611).

References

  1. Bruker (2005). SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Contello, B. C. C., Cawhorne, M. A., Haigh, D., Hindley, R. M., Smith, S. A. & Thurlby, P. L. (1994). Bioorg. Med. Chem. Lett. 4, 1181–1184.
  4. Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854.
  5. Kletzien, R. F., Clarke, S. D. & Ulrich, R. G. (1992). Mol. Pharmacol. 41, 393–398. [PubMed]
  6. Raper, E. S. (1985). Coord. Chem. Rev. 61, 115–184.
  7. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  8. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
  9. Villain-Guillot, P., Gualtieri, M., Bastide, L., Roquet, F., Martinez, J., Amblard, M., Pugniere, M. & Leonetti, J. P. (2007). J. Med. Chem. 50, 4195–4204. [DOI] [PubMed]
  10. Yan, S., Larson, G., Wu, J. Z., Applby, T., Ding, Y., Hamatake, R., Hong, Z. & Yao, N. (2007). Bioorg. Med. Chem. Lett. 17, 63–67. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813016577/su2611sup1.cif

e-69-o1128-sup1.cif (15.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813016577/su2611Isup2.hkl

e-69-o1128-Isup2.hkl (135.4KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813016577/su2611Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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