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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2013 Jun 22;69(Pt 7):o1141. doi: 10.1107/S1600536813016917

N′-[(E)-4-Bromo­benzyl­idene]pyrazine-2-carbohydrazide

Shahid Hameed a, Mushtaq Ahmad a,b, M Nawaz Tahir c,*, Muhammad Abdullah Shah d, Hazoor Ahmad Shad e
PMCID: PMC3770406  PMID: 24046691

Abstract

In the title compound, C12H9BrN4O, the N′-methyl­idene­pyrazine-2-carbohydrazide and 4-bromobenzene groups are oriented at a dihedral angle of 10.57 (7)°. The hydrazide N—H group is involved in intra­molecular N—H⋯N inter­action, which generates an S(5) motif. A short C—H⋯O inter­action is formed between the methyl­idene H atom and the carbonyl O atom. It connects mol­ecules into chains extending along [100]. In addition, mol­ecules are arranged into stacks extending along [010] via π–π inter­actions between pyrazine and benzene rings, with centroid–centroid distances of 3.837 (2) and 3.860 (2) Å.

Related literature  

For a related crystal structure and related studies, see: Hearn & Cynamon (2004); Jin et al. (2006); Yuan et al. (2006). For graph-set notation, see: Bernstein et al. (1995).graphic file with name e-69-o1141-scheme1.jpg

Experimental  

Crystal data  

  • C12H9BrN4O

  • M r = 305.14

  • Triclinic, Inline graphic

  • a = 5.8947 (9) Å

  • b = 7.6941 (12) Å

  • c = 14.029 (2) Å

  • α = 83.273 (7)°

  • β = 80.086 (7)°

  • γ = 72.440 (6)°

  • V = 596.11 (16) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 3.44 mm−1

  • T = 296 K

  • 0.26 × 0.22 × 0.20 mm

Data collection  

  • Bruker Kappa APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2005) T min = 0.425, T max = 0.503

  • 7382 measured reflections

  • 2529 independent reflections

  • 1403 reflections with I > 2σ(I)

  • R int = 0.074

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.039

  • wR(F 2) = 0.084

  • S = 0.94

  • 2529 reflections

  • 163 parameters

  • H-atom parameters constrained

  • Δρmax = 0.28 e Å−3

  • Δρmin = −0.30 e Å−3

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and PLATON (Spek, 2009); software used to prepare material for publication: WinGX (Farrugia, 2012) and PLATON.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813016917/gk2580sup1.cif

e-69-o1141-sup1.cif (20KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813016917/gk2580Isup2.hkl

e-69-o1141-Isup2.hkl (139KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813016917/gk2580Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C6—H6⋯O1i 0.93 2.24 3.132 (4) 161
N3—H3A⋯N1 0.86 2.27 2.671 (3) 108

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors acknowledge the provision of funds for the purchase of a diffractometer and encouragement by Dr Muhammad Akram Chaudhary, Vice Chancellor, University of Sargodha, Pakistan. The authors are also thankful to the Higher Education Commission (HEC) of Pakistan for financial support. MA is also thankful to the Pakistan Council of Scientific and Industrial Research (PCSIR) Laboratories of Pakistan for financial support throughout his study leave.

supplementary crystallographic information

Comment

The title compound (Fig. 1) was prepared to study biological activities of hydrazone compounds (Hearn & Cynamon, 2004; Jin et al., 2006).

Crystals of the earlier reported 4-chlorobenzaldehyde(pyrazine-2-carbonyl) hydrazone (Yuan et al., 2006) are practically isostructural with the title compound.

In the title compound the N'-methylidenepyrazine-2-carbohydrazide (A) (C1–C6/N1–N4/O1) and 4-bromophenyl (B) (C7–C12/Br1) moieties are almost planar with r. m. s. deviations of 0.061 Å and 0.009 Å, respectively. The dihedral angle between A/B is 10.57 (7)°. There exists intramolecular N—H···.N hydrogen bond (Table 1, Fig. 2) forming S(5) motif (Bernstein et al., 1995). The intermolecular hydrogen bonds of C—H···.O type (Table 1, Fig. 2) generate C(6) chains (Bernstein et al., 1995) along the crystallographic a-axis. There exist π–π interactions with a distance of 3.838 (2) Å [Cg1—Cg2i & Cg2— Cg1i: i = -x, 2 - y, -z] and 3.860 (2) Å [Cg1—Cg2ii & Cg2—Cg1ii: ii = -x, 1 - y, -z], between the centroids of pyrazine (Cg1) and benzene (Cg2) rings.

Experimental

The title compound was prepared by the condensation of equimolar ratio of pyrazine-2-carbohydrazide (0.50 g, 3.6 mmol) and 4-bromobenzaldehyde (0.67 g, 3.6 mmol) in methanol by the reflux of 5 h. The resulting reaction mixture was allowed to cool over night. The precipitated solid was filtered, washed with petroleum ether and recrystalized from chloroform in petroleum ether and dried under reduced pressure over CaCl2 to give white prisms. Rf: 0.40 (30% acetone in petroleum ether): Yield: 83%, soluble in chloroform; m.p. 546–547 K.

Refinement

The H atoms were positioned geometrically (N–H = 0.86 Å, C–H = 0.93 Å) and refined as riding on their carriers with Uiso(H) = xUeq(C, N), where x = 1.2 for all H-atoms.

Figures

Fig. 1.

Fig. 1.

View of the title compound with the displacement ellipsoids drawn at the 50% probability level. H atoms are shown by small circles of arbitrary radii.

Fig. 2.

Fig. 2.

Packing diagram of the title compound showing S(5) motif and C(6) chains along [1 0 0].

Crystal data

C12H9BrN4O Z = 2
Mr = 305.14 F(000) = 304
Triclinic, P1 Dx = 1.700 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 5.8947 (9) Å Cell parameters from 1403 reflections
b = 7.6941 (12) Å θ = 2.1–25.5°
c = 14.029 (2) Å µ = 3.44 mm1
α = 83.273 (7)° T = 296 K
β = 80.086 (7)° Prism, white
γ = 72.440 (6)° 0.26 × 0.22 × 0.20 mm
V = 596.11 (16) Å3

Data collection

Bruker Kappa APEXII CCD diffractometer 2529 independent reflections
Radiation source: fine-focus sealed tube 1403 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.074
Detector resolution: 8.10 pixels mm-1 θmax = 27.1°, θmin = 1.5°
ω scans h = −7→6
Absorption correction: multi-scan (SADABS; Bruker, 2005) k = −9→9
Tmin = 0.425, Tmax = 0.503 l = −17→17
7382 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.084 H-atom parameters constrained
S = 0.94 w = 1/[σ2(Fo2) + (0.0355P)2] where P = (Fo2 + 2Fc2)/3
2529 reflections (Δ/σ)max < 0.001
163 parameters Δρmax = 0.28 e Å3
0 restraints Δρmin = −0.30 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Br1 0.36405 (7) 0.25644 (5) 0.47485 (3) 0.07332 (19)
O1 −0.4594 (4) 0.8146 (3) −0.03918 (16) 0.0633 (7)
N1 −0.0274 (4) 0.9547 (3) −0.21291 (18) 0.0486 (7)
N2 −0.4307 (5) 1.1093 (4) −0.3071 (2) 0.0599 (8)
N3 −0.0701 (5) 0.7949 (3) −0.03380 (18) 0.0523 (7)
H3A 0.0565 0.8198 −0.0649 0.063*
N4 −0.0613 (5) 0.7038 (3) 0.05682 (19) 0.0508 (7)
C1 −0.2458 (5) 0.9456 (4) −0.1727 (2) 0.0401 (8)
C2 −0.0148 (6) 1.0405 (4) −0.3008 (2) 0.0538 (9)
H2 0.1337 1.0501 −0.3321 0.065*
C3 −0.2126 (6) 1.1151 (4) −0.3467 (2) 0.0549 (9)
H3 −0.1927 1.1724 −0.4084 0.066*
C4 −0.4426 (6) 1.0230 (4) −0.2191 (3) 0.0540 (9)
H4 −0.5918 1.0148 −0.1877 0.065*
C5 −0.2732 (6) 0.8455 (4) −0.0745 (2) 0.0476 (8)
C6 0.1460 (6) 0.6511 (4) 0.0827 (2) 0.0496 (9)
H6 0.2748 0.6734 0.0398 0.060*
C7 0.1898 (6) 0.5575 (4) 0.1764 (2) 0.0449 (8)
C8 0.0083 (6) 0.5360 (4) 0.2494 (2) 0.0496 (8)
H8 −0.1509 0.5833 0.2386 0.060*
C9 0.0571 (6) 0.4466 (4) 0.3372 (2) 0.0524 (9)
H9 −0.0679 0.4339 0.3853 0.063*
C10 0.2919 (6) 0.3757 (4) 0.3537 (2) 0.0500 (8)
C11 0.4775 (6) 0.3941 (4) 0.2827 (2) 0.0555 (9)
H11 0.6361 0.3455 0.2939 0.067*
C12 0.4264 (6) 0.4854 (4) 0.1945 (2) 0.0543 (9)
H12 0.5516 0.4989 0.1467 0.065*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Br1 0.0815 (3) 0.0777 (3) 0.0601 (3) −0.0224 (2) −0.0225 (2) 0.01461 (19)
O1 0.0580 (15) 0.0762 (17) 0.0622 (15) −0.0398 (13) 0.0071 (13) 0.0006 (12)
N1 0.0420 (16) 0.0576 (17) 0.0482 (17) −0.0216 (13) −0.0063 (13) 0.0069 (13)
N2 0.0479 (18) 0.070 (2) 0.064 (2) −0.0208 (15) −0.0186 (16) 0.0107 (15)
N3 0.0564 (19) 0.0604 (18) 0.0429 (16) −0.0271 (14) −0.0057 (15) 0.0106 (13)
N4 0.0555 (19) 0.0552 (17) 0.0433 (17) −0.0238 (14) −0.0035 (14) 0.0059 (13)
C1 0.0373 (19) 0.0392 (18) 0.0455 (19) −0.0143 (15) −0.0058 (16) −0.0009 (14)
C2 0.048 (2) 0.066 (2) 0.050 (2) −0.0259 (17) −0.0076 (18) 0.0125 (17)
C3 0.057 (2) 0.061 (2) 0.051 (2) −0.0225 (18) −0.0159 (19) 0.0060 (17)
C4 0.041 (2) 0.062 (2) 0.062 (2) −0.0221 (17) −0.0034 (18) −0.0014 (18)
C5 0.052 (2) 0.047 (2) 0.048 (2) −0.0234 (17) −0.0001 (18) −0.0048 (16)
C6 0.055 (2) 0.053 (2) 0.045 (2) −0.0293 (17) −0.0008 (18) 0.0027 (16)
C7 0.048 (2) 0.0429 (18) 0.048 (2) −0.0225 (15) −0.0039 (17) −0.0031 (15)
C8 0.0401 (19) 0.053 (2) 0.057 (2) −0.0192 (16) −0.0062 (17) 0.0068 (17)
C9 0.048 (2) 0.059 (2) 0.051 (2) −0.0221 (17) −0.0024 (18) 0.0051 (17)
C10 0.052 (2) 0.049 (2) 0.051 (2) −0.0199 (16) −0.0092 (18) 0.0019 (15)
C11 0.043 (2) 0.060 (2) 0.065 (2) −0.0157 (17) −0.0119 (19) −0.0025 (18)
C12 0.048 (2) 0.064 (2) 0.054 (2) −0.0247 (17) 0.0008 (18) −0.0048 (18)

Geometric parameters (Å, º)

Br1—C10 1.886 (3) C3—H3 0.9300
O1—C5 1.204 (3) C4—H4 0.9300
N1—C2 1.329 (4) C6—C7 1.447 (4)
N1—C1 1.332 (3) C6—H6 0.9300
N2—C3 1.322 (4) C7—C8 1.383 (4)
N2—C4 1.332 (4) C7—C12 1.393 (4)
N3—C5 1.346 (4) C8—C9 1.370 (4)
N3—N4 1.379 (3) C8—H8 0.9300
N3—H3A 0.8600 C9—C10 1.376 (4)
N4—C6 1.268 (4) C9—H9 0.9300
C1—C4 1.370 (4) C10—C11 1.377 (4)
C1—C5 1.506 (4) C11—C12 1.382 (4)
C2—C3 1.368 (4) C11—H11 0.9300
C2—H2 0.9300 C12—H12 0.9300
C2—N1—C1 115.4 (3) N4—C6—C7 122.5 (3)
C3—N2—C4 114.6 (3) N4—C6—H6 118.7
C5—N3—N4 121.3 (3) C7—C6—H6 118.7
C5—N3—H3A 119.4 C8—C7—C12 117.9 (3)
N4—N3—H3A 119.4 C8—C7—C6 123.3 (3)
C6—N4—N3 114.5 (3) C12—C7—C6 118.7 (3)
N1—C1—C4 121.5 (3) C9—C8—C7 121.6 (3)
N1—C1—C5 118.5 (3) C9—C8—H8 119.2
C4—C1—C5 119.9 (3) C7—C8—H8 119.2
N1—C2—C3 122.4 (3) C8—C9—C10 119.7 (3)
N1—C2—H2 118.8 C8—C9—H9 120.2
C3—C2—H2 118.8 C10—C9—H9 120.2
N2—C3—C2 122.8 (3) C9—C10—C11 120.4 (3)
N2—C3—H3 118.6 C9—C10—Br1 120.6 (3)
C2—C3—H3 118.6 C11—C10—Br1 119.0 (3)
N2—C4—C1 123.2 (3) C10—C11—C12 119.5 (3)
N2—C4—H4 118.4 C10—C11—H11 120.2
C1—C4—H4 118.4 C12—C11—H11 120.2
O1—C5—N3 125.4 (3) C11—C12—C7 120.9 (3)
O1—C5—C1 121.7 (3) C11—C12—H12 119.6
N3—C5—C1 112.9 (3) C7—C12—H12 119.6
C5—N3—N4—C6 174.4 (3) C4—C1—C5—N3 −173.2 (3)
C2—N1—C1—C4 −1.1 (4) N3—N4—C6—C7 178.3 (3)
C2—N1—C1—C5 178.2 (3) N4—C6—C7—C8 −7.6 (5)
C1—N1—C2—C3 0.3 (5) N4—C6—C7—C12 172.5 (3)
C4—N2—C3—C2 −0.7 (5) C12—C7—C8—C9 −0.1 (5)
N1—C2—C3—N2 0.7 (5) C6—C7—C8—C9 −180.0 (3)
C3—N2—C4—C1 −0.1 (5) C7—C8—C9—C10 −0.1 (5)
N1—C1—C4—N2 1.0 (5) C8—C9—C10—C11 0.0 (5)
C5—C1—C4—N2 −178.2 (3) C8—C9—C10—Br1 178.7 (2)
N4—N3—C5—O1 −1.9 (5) C9—C10—C11—C12 0.4 (5)
N4—N3—C5—C1 179.1 (2) Br1—C10—C11—C12 −178.3 (2)
N1—C1—C5—O1 −171.5 (3) C10—C11—C12—C7 −0.6 (5)
C4—C1—C5—O1 7.8 (5) C8—C7—C12—C11 0.5 (5)
N1—C1—C5—N3 7.6 (4) C6—C7—C12—C11 −179.7 (3)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
C6—H6···O1i 0.93 2.24 3.132 (4) 161
N3—H3A···N1 0.86 2.27 2.671 (3) 108

Symmetry code: (i) x+1, y, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: GK2580).

References

  1. Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573.
  2. Bruker (2005). SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  4. Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854.
  5. Hearn, M. J. & Cynamon, M. H. (2004). J. Antimicrob. Chemother. 53, 185–191. [DOI] [PubMed]
  6. Jin, L., Chen, J., Song, B., Chen, Z., Yang, S., Li, Q., Hu, D. & Xu, R. (2006). Bioorg. Med. Chem. Lett. 16, 5036–5040. [DOI] [PubMed]
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  9. Yuan, C.-C., Wu, L., Xing, Z.-Y. & Shi, X.-F. (2006). Acta Cryst. E62, o3274–o3275.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813016917/gk2580sup1.cif

e-69-o1141-sup1.cif (20KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813016917/gk2580Isup2.hkl

e-69-o1141-Isup2.hkl (139KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813016917/gk2580Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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