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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2013 Sep 4;69(Pt 10):m527. doi: 10.1107/S1600536813024288

Tri­carbonyl­chlorido­(6′,7′-di­hydro-5′H-spiro­[cyclo­hexane-1,6′-dipyrido[3,2-d:2′,3′-f][1,3]diazepine]-κ2 N 1,N 11)rhenium(I)

Oliver R Clegg a, Lindsay P Harding a,*, John W Miller a, Craig R Rice a
PMCID: PMC3790342  PMID: 24098164

Abstract

In the title compound, [ReCl(C16H18N4)(CO)3], the ReI ion is coordinated in a distorted octa­hedral geometry by one Cl atom, two N atoms of the bidentate ligand and three carbonyl groups. The cyclo­hexane group is orientated in a transoid fashion with respect to the chloride ligand. In the crystal, N—H⋯Cl hydrogen bonds link complex mol­ecules, forming a two-dimensional network parallel to (100).

Related literature  

For a review of the photophysical properties of Re–polypyridyl complexes, see: Coleman et al. (2008). For the synthesis of [Re(3,3′-di­amino-2,2′-bi­pyridine)(CO)3Cl] and for the preparation of oxo-steroid derivatives of [Re(3,3′-di­amino-2,2′-bi­pyridine)(CO)3Cl], see: Bullock et al. (2012). For the reaction of [Re(3,3′-di­amino-2,2′-bi­pyridine)(CO)3Cl] with ketones, see: Clayton et al. (2008). For the structure of the cyclo­pentane analogue of the title compound, see: Clegg et al. (2013).graphic file with name e-69-0m527-scheme1.jpg

Experimental  

Crystal data  

  • [ReCl(C16H18N4)(CO)3]

  • M r = 572.02

  • Monoclinic, Inline graphic

  • a = 12.6794 (6) Å

  • b = 11.9040 (6) Å

  • c = 12.7732 (6) Å

  • β = 97.066 (1)°

  • V = 1913.29 (16) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 6.52 mm−1

  • T = 150 K

  • 0.10 × 0.10 × 0.03 mm

Data collection  

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009) T min = 0.562, T max = 0.828

  • 22579 measured reflections

  • 5590 independent reflections

  • 4543 reflections with I > 2σ(I)

  • R int = 0.039

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.027

  • wR(F 2) = 0.051

  • S = 1.04

  • 5590 reflections

  • 259 parameters

  • 2 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 1.08 e Å−3

  • Δρmin = −0.74 e Å−3

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2.

Supplementary Material

Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813024288/lh5645sup1.cif

e-69-0m527-sup1.cif (25.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813024288/lh5645Isup2.hkl

e-69-0m527-Isup2.hkl (273.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N3—H3⋯Cl1i 0.89 (3) 2.64 (2) 3.417 (3) 146 (3)
N4—H4⋯Cl1ii 0.89 (3) 2.46 (3) 3.334 (3) 171 (3)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors wish to thank the University of Huddersfield for financial support.

supplementary crystallographic information

1. Comment

The title complex was prepared as part of a larger study into conjugation of [Re(3,3'-diamino-2,2'-bipyridine)(CO)3Cl] with oxo-steroids to form luminescent derivatives (Bullock et al. 2012). These steroids contain a cyclohexyl ring (ring A) with a ketone group in the 3-position; therefore, cyclohexanone was used as a model compound to examine the potential reactivity of such steroids with the rhenium complex.

Single-crystal X-ray analysis of the title complex gave the structure shown in Fig. 1. The rhenium centre adopts a distorted octahedral geometry which is coordinated by two nitrogen atoms from a 3,3'-diamino-2,2'-bipyridyl ligand and two carbonyl ligands in the equatorial sites and by a carbonyl ligand and a chloride ion in the axial sites. The cyclohexyl ring adopts a chair conformation and is orientated in a trans-oid fashion relative to the chloride ion on the rhenium centre. In the crystal, N—H···Cl hydrogen bonds (Table 1 & Fig. 2) link complex molecules to form a two-dimensional network parallel (100).

A similar compound has been prepared using cyclopentanone instead of cyclohexanone. The title compound compound is essentially isostructural with that compound (Clegg et al. 2013).

2. Experimental

To a solution of [Re(3,3'-diamino-2,2'-bipyridine)(CO)3Cl] in dichloromethane was added cyclohexanone (10 µL, ca. 2 eq.) and a few grains of camphorsulfonic acid. The solution was stirred at room temperature for 2 h. The resulting precipitate was filtered in vacuo, washed with dichloromethane and dried, giving the product as a yellow solid. Crystals suitable for X-ray analysis were prepared by slow evaporation of an acetonitrile solution of the complex.

3. Refinement

All non-hydrogen atoms were refined anisotropically. Hydrogen atoms on sp2 and sp3 C atoms were placed in calculated positions and refined with riding constraints and isotropic displacement parameters 1.2 × their parent carbon atoms. H atoms bonded to N atoms were refined independently with a bond length constraint of 0.91 (2)Å and Uiso(H) = 1.2Ueq(N).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with displacement ellipsoids shown at the 50% probability level.

Crystal data

[ReCl(C16H18N4)(CO)3] F(000) = 1104
Mr = 572.02 Dx = 1.986 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 6672 reflections
a = 12.6794 (6) Å θ = 2.4–30.2°
b = 11.9040 (6) Å µ = 6.52 mm1
c = 12.7732 (6) Å T = 150 K
β = 97.066 (1)° Block, yellow
V = 1913.29 (16) Å3 0.10 × 0.10 × 0.03 mm
Z = 4

Data collection

Bruker APEXII CCD diffractometer 5590 independent reflections
Radiation source: fine-focus sealed tube 4543 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.039
φ and ω scans θmax = 30.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009) h = −17→17
Tmin = 0.562, Tmax = 0.828 k = −16→16
22579 measured reflections l = −17→17

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.051 H atoms treated by a mixture of independent and constrained refinement
S = 1.04 w = 1/[σ2(Fo2) + (0.0164P)2 + 1.9168P] where P = (Fo2 + 2Fc2)/3
5590 reflections (Δ/σ)max = 0.002
259 parameters Δρmax = 1.08 e Å3
2 restraints Δρmin = −0.74 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Re1 0.209524 (11) 0.453951 (10) 0.250974 (9) 0.01842 (4)
Cl1 0.33970 (7) 0.60427 (7) 0.21693 (7) 0.02644 (18)
N1 0.3302 (2) 0.4016 (2) 0.37600 (19) 0.0185 (5)
N2 0.1863 (2) 0.5567 (2) 0.38525 (19) 0.0199 (5)
N3 0.3158 (2) 0.6174 (2) 0.6529 (2) 0.0215 (6)
N4 0.4188 (2) 0.4503 (3) 0.6590 (2) 0.0310 (7)
O1 0.0385 (2) 0.5624 (2) 0.09147 (18) 0.0306 (6)
O2 0.2669 (3) 0.3038 (2) 0.0706 (2) 0.0477 (8)
O3 0.0489 (2) 0.2781 (2) 0.3017 (2) 0.0387 (7)
C1 0.1030 (3) 0.5197 (3) 0.1503 (2) 0.0226 (7)
C2 0.2461 (3) 0.3609 (3) 0.1381 (3) 0.0286 (8)
C3 0.1102 (3) 0.3443 (3) 0.2834 (2) 0.0255 (7)
C4 0.3337 (2) 0.4527 (3) 0.4731 (2) 0.0189 (6)
C5 0.4093 (3) 0.4144 (3) 0.5566 (2) 0.0209 (7)
C6 0.4833 (3) 0.3319 (3) 0.5338 (3) 0.0227 (7)
H6 0.5368 0.3080 0.5878 0.027*
C7 0.4792 (3) 0.2859 (3) 0.4357 (3) 0.0255 (7)
H7 0.5293 0.2307 0.4206 0.031*
C8 0.4001 (3) 0.3219 (3) 0.3585 (3) 0.0229 (7)
H8 0.3954 0.2887 0.2905 0.027*
C9 0.2552 (2) 0.5444 (3) 0.4760 (2) 0.0175 (6)
C10 0.2467 (3) 0.6191 (3) 0.5607 (2) 0.0195 (6)
C11 0.1681 (3) 0.7017 (3) 0.5486 (3) 0.0268 (8)
H11 0.1617 0.7523 0.6050 0.032*
C12 0.1001 (3) 0.7113 (3) 0.4572 (3) 0.0309 (8)
H12 0.0465 0.7675 0.4495 0.037*
C13 0.1117 (3) 0.6367 (3) 0.3764 (3) 0.0273 (8)
H13 0.0651 0.6425 0.3125 0.033*
C14 0.3416 (3) 0.5122 (3) 0.7096 (2) 0.0234 (7)
C15 0.2419 (3) 0.4398 (3) 0.7144 (3) 0.0296 (8)
H15A 0.2073 0.4253 0.6419 0.036*
H15B 0.2628 0.3665 0.7474 0.036*
C16 0.1653 (4) 0.4967 (4) 0.7762 (3) 0.0432 (10)
H16A 0.1025 0.4480 0.7792 0.052*
H16B 0.1411 0.5678 0.7410 0.052*
C17 0.2176 (4) 0.5216 (4) 0.8886 (3) 0.0514 (13)
H17A 0.1662 0.5610 0.9281 0.062*
H17B 0.2374 0.4500 0.9254 0.062*
C18 0.3166 (4) 0.5941 (4) 0.8870 (3) 0.0401 (10)
H18A 0.2956 0.6691 0.8580 0.048*
H18B 0.3516 0.6044 0.9600 0.048*
C19 0.3935 (3) 0.5414 (3) 0.8214 (3) 0.0335 (8)
H19A 0.4228 0.4720 0.8567 0.040*
H19B 0.4534 0.5937 0.8165 0.040*
H3 0.305 (3) 0.678 (2) 0.691 (3) 0.040*
H4 0.479 (2) 0.433 (3) 0.699 (3) 0.040*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Re1 0.01938 (6) 0.01328 (6) 0.02209 (6) 0.00027 (6) 0.00050 (4) −0.00139 (5)
Cl1 0.0213 (4) 0.0212 (4) 0.0355 (4) −0.0005 (3) −0.0016 (3) 0.0099 (3)
N1 0.0202 (14) 0.0109 (13) 0.0243 (12) −0.0002 (11) 0.0020 (11) 0.0016 (10)
N2 0.0188 (13) 0.0153 (13) 0.0243 (12) 0.0019 (12) −0.0032 (10) −0.0022 (10)
N3 0.0240 (15) 0.0139 (14) 0.0251 (13) −0.0009 (12) −0.0037 (12) −0.0009 (10)
N4 0.0241 (16) 0.0336 (17) 0.0322 (14) 0.0131 (15) −0.0091 (12) −0.0073 (14)
O1 0.0313 (14) 0.0297 (14) 0.0285 (12) 0.0044 (12) −0.0052 (11) −0.0035 (10)
O2 0.073 (2) 0.0393 (17) 0.0327 (14) 0.0243 (16) 0.0140 (15) −0.0042 (12)
O3 0.0384 (17) 0.0295 (15) 0.0479 (15) −0.0119 (13) 0.0033 (13) −0.0002 (12)
C1 0.0260 (18) 0.0169 (17) 0.0252 (15) −0.0050 (14) 0.0042 (14) −0.0069 (12)
C2 0.035 (2) 0.0219 (18) 0.0287 (16) 0.0060 (17) 0.0044 (15) 0.0051 (14)
C3 0.029 (2) 0.0202 (18) 0.0258 (15) 0.0002 (15) −0.0018 (14) −0.0042 (13)
C4 0.0164 (14) 0.0124 (14) 0.0272 (14) −0.0039 (14) −0.0005 (12) −0.0013 (12)
C5 0.0183 (16) 0.0157 (15) 0.0281 (15) −0.0021 (13) 0.0002 (13) −0.0006 (12)
C6 0.0153 (16) 0.0156 (16) 0.0362 (17) 0.0022 (13) −0.0008 (14) 0.0016 (12)
C7 0.0216 (18) 0.0154 (16) 0.0402 (18) 0.0034 (14) 0.0072 (15) 0.0018 (13)
C8 0.0234 (18) 0.0146 (16) 0.0308 (16) 0.0033 (14) 0.0045 (14) −0.0009 (12)
C9 0.0186 (15) 0.0122 (14) 0.0209 (12) −0.0008 (14) −0.0013 (11) 0.0017 (12)
C10 0.0196 (16) 0.0116 (15) 0.0262 (14) −0.0005 (13) −0.0024 (13) 0.0003 (11)
C11 0.029 (2) 0.0181 (17) 0.0319 (16) 0.0064 (15) −0.0016 (15) −0.0077 (13)
C12 0.033 (2) 0.0236 (19) 0.0348 (18) 0.0124 (17) −0.0033 (16) −0.0046 (14)
C13 0.0263 (19) 0.0232 (18) 0.0300 (16) 0.0091 (16) −0.0061 (14) −0.0033 (14)
C14 0.0254 (18) 0.0201 (17) 0.0227 (14) 0.0045 (14) −0.0052 (13) −0.0018 (12)
C15 0.040 (2) 0.0168 (18) 0.0308 (16) −0.0015 (16) −0.0001 (16) 0.0025 (13)
C16 0.043 (3) 0.039 (2) 0.049 (2) −0.009 (2) 0.012 (2) −0.0029 (19)
C17 0.071 (4) 0.045 (3) 0.042 (2) −0.001 (2) 0.022 (2) −0.0035 (19)
C18 0.048 (3) 0.040 (2) 0.0311 (19) −0.001 (2) −0.0006 (18) −0.0039 (16)
C19 0.037 (2) 0.033 (2) 0.0267 (15) 0.0077 (19) −0.0094 (15) −0.0033 (15)

Geometric parameters (Å, º)

Re1—C3 1.895 (4) C7—H7 0.9500
Re1—C1 1.914 (3) C8—H8 0.9500
Re1—C2 1.919 (4) C9—C10 1.414 (4)
Re1—N2 2.156 (3) C10—C11 1.395 (5)
Re1—N1 2.163 (3) C11—C12 1.368 (5)
Re1—Cl1 2.5083 (9) C11—H11 0.9500
N1—C8 1.335 (4) C12—C13 1.383 (5)
N1—C4 1.377 (4) C12—H12 0.9500
N2—C13 1.338 (4) C13—H13 0.9500
N2—C9 1.370 (4) C14—C19 1.537 (4)
N3—C10 1.378 (4) C14—C15 1.538 (5)
N3—C14 1.464 (4) C15—C16 1.488 (6)
N3—H3 0.895 (18) C15—H15A 0.9900
N4—C5 1.367 (4) C15—H15B 0.9900
N4—C14 1.440 (5) C16—C17 1.534 (6)
N4—H4 0.895 (19) C16—H16A 0.9900
O1—C1 1.158 (4) C16—H16B 0.9900
O2—C2 1.154 (4) C17—C18 1.526 (6)
O3—C3 1.151 (4) C17—H17A 0.9900
C4—C5 1.418 (4) C17—H17B 0.9900
C4—C9 1.482 (4) C18—C19 1.500 (5)
C5—C6 1.413 (5) C18—H18A 0.9900
C6—C7 1.362 (5) C18—H18B 0.9900
C6—H6 0.9500 C19—H19A 0.9900
C7—C8 1.386 (5) C19—H19B 0.9900
C3—Re1—C1 89.74 (14) N3—C10—C11 118.4 (3)
C3—Re1—C2 89.72 (15) N3—C10—C9 122.9 (3)
C1—Re1—C2 86.96 (14) C11—C10—C9 118.6 (3)
C3—Re1—N2 93.30 (12) C12—C11—C10 121.3 (3)
C1—Re1—N2 98.55 (11) C12—C11—H11 119.4
C2—Re1—N2 173.72 (13) C10—C11—H11 119.4
C3—Re1—N1 93.94 (12) C11—C12—C13 118.0 (3)
C1—Re1—N1 172.11 (11) C11—C12—H12 121.0
C2—Re1—N1 100.02 (13) C13—C12—H12 121.0
N2—Re1—N1 74.30 (10) N2—C13—C12 122.2 (3)
C3—Re1—Cl1 176.99 (10) N2—C13—H13 118.9
C1—Re1—Cl1 90.96 (10) C12—C13—H13 118.9
C2—Re1—Cl1 93.23 (12) N4—C14—N3 109.8 (3)
N2—Re1—Cl1 83.70 (8) N4—C14—C19 107.2 (3)
N1—Re1—Cl1 85.01 (7) N3—C14—C19 108.1 (3)
C8—N1—C4 121.0 (3) N4—C14—C15 109.8 (3)
C8—N1—Re1 120.3 (2) N3—C14—C15 111.4 (3)
C4—N1—Re1 118.6 (2) C19—C14—C15 110.5 (3)
C13—N2—C9 121.2 (3) C16—C15—C14 111.1 (3)
C13—N2—Re1 120.1 (2) C16—C15—H15A 109.4
C9—N2—Re1 118.5 (2) C14—C15—H15A 109.4
C10—N3—C14 121.0 (3) C16—C15—H15B 109.4
C10—N3—H3 110 (3) C14—C15—H15B 109.4
C14—N3—H3 117 (3) H15A—C15—H15B 108.0
C5—N4—C14 127.2 (3) C15—C16—C17 110.5 (4)
C5—N4—H4 116 (3) C15—C16—H16A 109.6
C14—N4—H4 116 (3) C17—C16—H16A 109.6
O1—C1—Re1 177.8 (3) C15—C16—H16B 109.6
O2—C2—Re1 178.9 (4) C17—C16—H16B 109.6
O3—C3—Re1 179.0 (3) H16A—C16—H16B 108.1
N1—C4—C5 118.6 (3) C18—C17—C16 111.0 (3)
N1—C4—C9 113.6 (3) C18—C17—H17A 109.4
C5—C4—C9 127.8 (3) C16—C17—H17A 109.4
N4—C5—C6 115.6 (3) C18—C17—H17B 109.4
N4—C5—C4 126.2 (3) C16—C17—H17B 109.4
C6—C5—C4 118.2 (3) H17A—C17—H17B 108.0
C7—C6—C5 121.2 (3) C19—C18—C17 111.3 (3)
C7—C6—H6 119.4 C19—C18—H18A 109.4
C5—C6—H6 119.4 C17—C18—H18A 109.4
C6—C7—C8 118.2 (3) C19—C18—H18B 109.4
C6—C7—H7 120.9 C17—C18—H18B 109.4
C8—C7—H7 120.9 H18A—C18—H18B 108.0
N1—C8—C7 122.5 (3) C18—C19—C14 112.4 (3)
N1—C8—H8 118.7 C18—C19—H19A 109.1
C7—C8—H8 118.7 C14—C19—H19A 109.1
N2—C9—C10 118.7 (3) C18—C19—H19B 109.1
N2—C9—C4 114.7 (3) C14—C19—H19B 109.1
C10—C9—C4 126.6 (3) H19A—C19—H19B 107.9

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N3—H3···Cl1i 0.89 (3) 2.64 (2) 3.417 (3) 146 (3)
N4—H4···Cl1ii 0.89 (3) 2.46 (3) 3.334 (3) 171 (3)

Symmetry codes: (i) x, −y+3/2, z+1/2; (ii) −x+1, −y+1, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH5645).

References

  1. Bruker (2009). APEX2, SAINT and SADABS . Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Bullock, S., Hallett, A. J., Harding, L. P., Higginson, J. J., Piela, S. A. F., Pope, S. J. A. & Rice, C. R. (2012). Dalton Trans. 41, 14690–14696. [DOI] [PubMed]
  3. Clayton, H. J., Harding, L. P., Irvine, J. P., Jeffery, J. C., Riis-Johannessen, T., Laws, A. P., Rice, C. R. & Whitehead, M. (2008). Chem. Commun. pp. 108–110. [DOI] [PubMed]
  4. Clegg, O. R., Harding, L. P., Miller, J. W. & Rice, C. R. (2013). Acta Cryst. E69, m526. [DOI] [PMC free article] [PubMed]
  5. Coleman, A., Brennan, C., Vos, J. G. & Pryce, M. T. (2008). Coord. Chem. Rev. 252, 2585–2595.
  6. Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339–341.
  7. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813024288/lh5645sup1.cif

e-69-0m527-sup1.cif (25.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813024288/lh5645Isup2.hkl

e-69-0m527-Isup2.hkl (273.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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