Skip to main content
Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2013 Sep 7;69(Pt 10):m536. doi: 10.1107/S1600536813024549

Di­bromido­bis­(2-methyl-1H-benzimidazole-κN 3)cadmium

Bao-Cheng Liu a,*, Yan-Ling Jin a, Fa-Qian Liu a
PMCID: PMC3790347  PMID: 24098169

Abstract

In the title compound, [CdBr2(C8H8N2)2], the CdII atom has a distorted tetra­hedral coordination formed by the two imino N atoms of two 2-methyl­benzimidazole ligands and two terminal bromide ligands. The CdII atom is slightly out of the benzimidazole planes by 0.320 (3) and 0.210 (3) Å. The dihedral angle between the benzimidazole planes is 71.6 (2)°. In the crystal, mol­ecules are linked by N—H⋯Br hydrogen bonds into puckered layers parallel to (001).

Related literature  

For background to benzimidazole, see: Roderick et al. (1972). For related crystal structures, see: Barros-García et al. (2005); Wang et al. (2010); Yang et al. (2011).graphic file with name e-69-0m536-scheme1.jpg

Experimental  

Crystal data  

  • [CdBr2(C8H8N2)2]

  • M r = 536.54

  • Monoclinic, Inline graphic

  • a = 10.007 (9) Å

  • b = 14.747 (12) Å

  • c = 12.399 (11) Å

  • β = 93.088 (14)°

  • V = 1827 (3) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 5.57 mm−1

  • T = 296 K

  • 0.22 × 0.18 × 0.16 mm

Data collection  

  • Rigaku R-AXIS Spider diffractometer

  • Absorption correction: multi-scan (ABSCOR; Higashi, 1995) T min = 0.374, T max = 0.469

  • 9698 measured reflections

  • 3585 independent reflections

  • 2748 reflections with I > 2σ(I)

  • R int = 0.032

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.033

  • wR(F 2) = 0.077

  • S = 1.00

  • 3585 reflections

  • 210 parameters

  • H-atom parameters constrained

  • Δρmax = 0.39 e Å−3

  • Δρmin = −1.02 e Å−3

Data collection: RAPID-AUTO (Rigaku, 2004); cell refinement: RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813024549/kq2008sup1.cif

e-69-0m536-sup1.cif (25.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813024549/kq2008Isup2.hkl

e-69-0m536-Isup2.hkl (175.8KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813024549/kq2008Isup3.cdx

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H2⋯Br1i 0.86 2.88 3.495 (4) 130
N4—H4⋯Br2ii 0.86 2.77 3.563 (4) 155

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

This work was supported by the NSF of Shandong Province (No. 2009ZRA02071), the Scientific Development Plan of Universities in Shandong Province (No. J09LB53) and the Doctoral Science Foundation of QUST.

supplementary crystallographic information

1. Comment

Benzimidazole and its derivatives have attracted interest because their biological activities as well as their abilities to bind different metal ions (Roderick et al., 1972). In this paper, we describe the synthesis and structure of dibromo-bis(2-methylbenzimidazole)-cadmium(II).

In the title compound, C16H16CdBr2N4, the cadmium atom has a distorted tetrahedral coordination formed by the two imino-nitrogen atoms of two 2-methyl-benzimidazole ligands and two terminal bromide ligands (Figure 1). The similar geometry was previously found in the related compounds – Cd(Cl)2(N-(5,6-dihydro-4H- 1,3-thiazin-2-yl)-2-aminobenzimidazole)2 (Barros-García et al., 2005), Cd(Cl)2(2-(2-furyl)-1-(2-furylmethyl)-1H-benzimidazole)2 (Wang et al., 2010), and Cd(I)2(2-(2-furyl)-1-(2-furylmethyl)- 1H-enzimidazole)2 (Yang et al., 2011). The cadmium atom is slightly out of the two benzimidazole planes by 0.320 (3) and 0.210 (3) Å, respectively. The dihedral angle between the two benzimidazole planes is 71.6 (2)°. The mean values of Cd—Br and Cd—N bond lengths are 2.562 (2) and 2.251 (3) Å, respectively. The N—Cd—Br bond angles range from 105.40 (10) to 117.76 (9)°.

In the crystal, the molecules of the title compound are linked by intermolecular N2—H2···Br1i and N4—H4···Br2ii hydrogen bonds (Table 1) into puckered layers parallel to (001) (Figure 2). Symmetry codes: (i) –x+1, y–1/2, –z+3/2; (ii) –x, y–1/2, –z+3/2.

2. Experimental

The ligand 2-methyl-benzimidazole (0.02 mmol) in ethanol (10 mL) was added dropwise to a ethanol (10 mL) of CdBr2 (0.01 mmol). The resulting solution was allowed to stand at room temperature. After one week colorless crystals with good quality were obtained from the filtrate and dried in air. Analysis, calculated for C16H16Br2CdN4: C 35.82, H 3.01, N 10.44%; Found: C 35.68, H 3.02, N 10.47%.

3. Refinement

All hydrogen atoms were placed in calculated positions with N—H = 0.86 Å and C—H = 0.93 (aryl-H) and 0.96 (methyl-H) Å and refined in the riding model with fixed isotropic displacement parameters [Uiso(H) = 1.2Ueq(N or C)].

Figures

Fig. 1.

Fig. 1.

Molecular structure of the title compound. Displacement ellipsoids are shown at the 40% probability level. H atoms are presented as small spheres of arbitrary radius.

Fig. 2.

Fig. 2.

Crystal packing of the title compound along the b axis demonstrating the puckered layers parallel to (001). Dashed lines indicate the intermolecular hydrogen bonds.

Crystal data

[CdBr2(C8H8N2)2] F(000) = 1032
Mr = 536.54 Dx = 1.951 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 3275 reflections
a = 10.007 (9) Å θ = 2.5–26.6°
b = 14.747 (12) Å µ = 5.57 mm1
c = 12.399 (11) Å T = 296 K
β = 93.088 (14)° Block, colorless
V = 1827 (3) Å3 0.22 × 0.18 × 0.16 mm
Z = 4

Data collection

Rigaku R-AXIS Spider diffractometer 2748 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.032
Graphite monochromator θmax = 26.0°, θmin = 2.0°
ω scans h = −12→10
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) k = −18→14
Tmin = 0.374, Tmax = 0.469 l = −15→14
9698 measured reflections 13 standard reflections every 0 reflections
3585 independent reflections intensity decay: none

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.077 H-atom parameters constrained
S = 1.00 w = 1/[σ2(Fo2) + (0.0407P)2] where P = (Fo2 + 2Fc2)/3
3585 reflections (Δ/σ)max = 0.001
210 parameters Δρmax = 0.39 e Å3
0 restraints Δρmin = −1.02 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
N1 0.3592 (3) 0.96335 (19) 0.8577 (2) 0.0362 (7)
N2 0.5028 (4) 0.8661 (2) 0.9341 (3) 0.0485 (9)
H2 0.5712 0.8311 0.9428 0.058*
N3 0.0723 (3) 1.01679 (18) 0.6820 (2) 0.0339 (7)
N4 −0.1049 (3) 0.93220 (19) 0.6357 (2) 0.0417 (8)
H4 −0.1554 0.8851 0.6290 0.050*
Br1 0.40130 (5) 1.14156 (3) 0.60773 (4) 0.06071 (16)
Br2 0.20546 (5) 1.20099 (3) 0.88850 (4) 0.06367 (17)
C1 0.4087 (4) 0.8806 (2) 1.0086 (3) 0.0409 (9)
C2 0.3939 (5) 0.8457 (3) 1.1109 (3) 0.0531 (12)
H2A 0.4561 0.8060 1.1434 0.064*
C3 0.2816 (6) 0.8730 (3) 1.1622 (4) 0.0626 (14)
H3 0.2681 0.8511 1.2311 0.075*
C4 0.1873 (6) 0.9326 (3) 1.1139 (4) 0.0633 (13)
H4A 0.1119 0.9482 1.1505 0.076*
C5 0.2045 (5) 0.9687 (3) 1.0127 (3) 0.0535 (11)
H5 0.1432 1.0094 0.9812 0.064*
C6 0.3175 (4) 0.9417 (2) 0.9597 (3) 0.0368 (9)
C7 0.4708 (4) 0.9156 (2) 0.8454 (3) 0.0408 (9)
C8 0.5489 (5) 0.9139 (3) 0.7478 (4) 0.0620 (13)
H8A 0.4935 0.9338 0.6867 0.093*
H8B 0.5793 0.8532 0.7355 0.093*
H8C 0.6246 0.9536 0.7578 0.093*
C9 −0.0236 (4) 1.0707 (2) 0.6250 (3) 0.0332 (8)
C10 −0.0180 (4) 1.1618 (2) 0.5961 (3) 0.0420 (9)
H10 0.0571 1.1972 0.6131 0.050*
C11 −0.1303 (5) 1.1972 (3) 0.5406 (3) 0.0502 (11)
H11 −0.1297 1.2575 0.5187 0.060*
C12 −0.2441 (5) 1.1449 (3) 0.5168 (3) 0.0531 (11)
H12 −0.3184 1.1720 0.4820 0.064*
C13 −0.2499 (4) 1.0548 (3) 0.5431 (3) 0.0482 (10)
H13 −0.3255 1.0199 0.5259 0.058*
C14 −0.1372 (4) 1.0184 (2) 0.5966 (3) 0.0364 (9)
C15 0.0180 (4) 0.9343 (2) 0.6856 (3) 0.0386 (9)
C16 0.0818 (5) 0.8531 (2) 0.7384 (3) 0.0577 (13)
H16A 0.1749 0.8514 0.7233 0.087*
H16B 0.0384 0.7992 0.7108 0.087*
H16C 0.0733 0.8566 0.8150 0.087*
Cd1 0.26490 (3) 1.074421 (18) 0.75481 (2) 0.03930 (11)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
N1 0.039 (2) 0.0255 (15) 0.0436 (18) 0.0043 (14) 0.0033 (15) 0.0002 (14)
N2 0.044 (2) 0.0340 (18) 0.066 (2) 0.0133 (15) −0.0060 (18) 0.0078 (17)
N3 0.0365 (18) 0.0242 (15) 0.0410 (16) −0.0068 (13) 0.0015 (14) −0.0021 (13)
N4 0.048 (2) 0.0289 (17) 0.0482 (19) −0.0128 (14) 0.0016 (16) −0.0055 (14)
Br1 0.0653 (3) 0.0460 (3) 0.0713 (3) −0.0150 (2) 0.0077 (2) 0.0149 (2)
Br2 0.0746 (4) 0.0398 (3) 0.0745 (3) 0.0205 (2) −0.0163 (3) −0.0179 (2)
C1 0.044 (2) 0.027 (2) 0.050 (2) −0.0007 (17) −0.010 (2) 0.0000 (18)
C2 0.066 (3) 0.039 (2) 0.053 (3) −0.008 (2) −0.017 (2) 0.006 (2)
C3 0.089 (4) 0.058 (3) 0.041 (2) −0.018 (3) 0.003 (3) −0.003 (2)
C4 0.082 (4) 0.057 (3) 0.052 (3) 0.005 (3) 0.016 (3) −0.005 (2)
C5 0.058 (3) 0.049 (3) 0.053 (3) 0.016 (2) 0.002 (2) −0.003 (2)
C6 0.043 (2) 0.0256 (19) 0.041 (2) −0.0001 (16) 0.0017 (18) −0.0006 (16)
C7 0.039 (2) 0.030 (2) 0.053 (2) 0.0008 (17) 0.0057 (19) −0.0037 (18)
C8 0.057 (3) 0.050 (3) 0.081 (3) 0.006 (2) 0.027 (3) −0.005 (2)
C9 0.037 (2) 0.030 (2) 0.0328 (19) 0.0039 (16) 0.0046 (16) −0.0025 (16)
C10 0.046 (3) 0.033 (2) 0.048 (2) −0.0044 (18) 0.0004 (19) −0.0034 (18)
C11 0.068 (3) 0.029 (2) 0.053 (2) 0.013 (2) −0.003 (2) −0.0004 (19)
C12 0.051 (3) 0.054 (3) 0.053 (3) 0.013 (2) −0.010 (2) −0.006 (2)
C13 0.041 (3) 0.053 (3) 0.050 (2) −0.004 (2) −0.005 (2) −0.011 (2)
C14 0.041 (2) 0.035 (2) 0.0341 (19) −0.0006 (17) 0.0046 (17) −0.0080 (16)
C15 0.051 (3) 0.028 (2) 0.038 (2) −0.0037 (17) 0.0054 (19) 0.0007 (16)
C16 0.082 (4) 0.030 (2) 0.059 (3) −0.008 (2) −0.014 (2) 0.011 (2)
Cd1 0.04113 (19) 0.02686 (16) 0.04918 (18) 0.00061 (12) −0.00430 (13) 0.00266 (12)

Geometric parameters (Å, º)

N1—C7 1.336 (5) C4—H4A 0.9300
N1—C6 1.390 (5) C5—C6 1.396 (6)
N1—Cd1 2.252 (3) C5—H5 0.9300
N2—C7 1.345 (5) C7—C8 1.475 (6)
N2—C1 1.370 (5) C8—H8A 0.9600
N2—H2 0.8600 C8—H8B 0.9600
N3—C15 1.334 (4) C8—H8C 0.9600
N3—C9 1.407 (5) C9—C10 1.393 (5)
N3—Cd1 2.250 (3) C9—C14 1.403 (5)
N4—C15 1.347 (5) C10—C11 1.387 (6)
N4—C14 1.392 (5) C10—H10 0.9300
N4—H4 0.8600 C11—C12 1.394 (6)
Br1—Cd1 2.5372 (15) C11—H11 0.9300
Br2—Cd1 2.5869 (15) C12—C13 1.370 (6)
C1—C2 1.385 (6) C12—H12 0.9300
C1—C6 1.398 (5) C13—C14 1.386 (6)
C2—C3 1.381 (7) C13—H13 0.9300
C2—H2A 0.9300 C15—C16 1.492 (5)
C3—C4 1.401 (7) C16—H16A 0.9600
C3—H3 0.9300 C16—H16B 0.9600
C4—C5 1.381 (6) C16—H16C 0.9600
C7—N1—C6 106.1 (3) C7—C8—H8C 109.5
C7—N1—Cd1 130.2 (3) H8A—C8—H8C 109.5
C6—N1—Cd1 123.1 (2) H8B—C8—H8C 109.5
C7—N2—C1 109.0 (3) C10—C9—C14 120.6 (4)
C7—N2—H2 125.5 C10—C9—N3 129.7 (4)
C1—N2—H2 125.5 C14—C9—N3 109.7 (3)
C15—N3—C9 105.3 (3) C11—C10—C9 116.6 (4)
C15—N3—Cd1 132.3 (3) C11—C10—H10 121.7
C9—N3—Cd1 122.3 (2) C9—C10—H10 121.7
C15—N4—C14 109.1 (3) C10—C11—C12 121.9 (4)
C15—N4—H4 125.4 C10—C11—H11 119.1
C14—N4—H4 125.4 C12—C11—H11 119.1
N2—C1—C2 132.2 (4) C13—C12—C11 122.1 (4)
N2—C1—C6 105.3 (3) C13—C12—H12 119.0
C2—C1—C6 122.5 (4) C11—C12—H12 119.0
C3—C2—C1 116.3 (4) C12—C13—C14 116.5 (4)
C3—C2—H2A 121.8 C12—C13—H13 121.8
C1—C2—H2A 121.8 C14—C13—H13 121.8
C2—C3—C4 122.2 (4) C13—C14—N4 133.4 (4)
C2—C3—H3 118.9 C13—C14—C9 122.3 (4)
C4—C3—H3 118.9 N4—C14—C9 104.2 (3)
C5—C4—C3 121.0 (5) N3—C15—N4 111.7 (3)
C5—C4—H4A 119.5 N3—C15—C16 125.5 (4)
C3—C4—H4A 119.5 N4—C15—C16 122.8 (3)
C4—C5—C6 117.5 (4) C15—C16—H16A 109.5
C4—C5—H5 121.2 C15—C16—H16B 109.5
C6—C5—H5 121.2 H16A—C16—H16B 109.5
N1—C6—C5 130.8 (4) C15—C16—H16C 109.5
N1—C6—C1 108.8 (3) H16A—C16—H16C 109.5
C5—C6—C1 120.4 (4) H16B—C16—H16C 109.5
N1—C7—N2 110.8 (3) N3—Cd1—N1 106.04 (12)
N1—C7—C8 125.9 (4) N3—Cd1—Br1 109.95 (9)
N2—C7—C8 123.3 (4) N1—Cd1—Br1 117.77 (9)
C7—C8—H8A 109.5 N3—Cd1—Br2 107.95 (9)
C7—C8—H8B 109.5 N1—Cd1—Br2 105.40 (9)
H8A—C8—H8B 109.5 Br1—Cd1—Br2 109.28 (2)
C7—N2—C1—C2 178.9 (4) C9—C10—C11—C12 1.2 (6)
C7—N2—C1—C6 0.1 (4) C10—C11—C12—C13 −2.5 (7)
N2—C1—C2—C3 −177.2 (4) C11—C12—C13—C14 1.1 (6)
C6—C1—C2—C3 1.3 (6) C12—C13—C14—N4 −179.9 (4)
C1—C2—C3—C4 0.1 (7) C12—C13—C14—C9 1.4 (6)
C2—C3—C4—C5 −1.5 (7) C15—N4—C14—C13 −177.7 (4)
C3—C4—C5—C6 1.5 (7) C15—N4—C14—C9 1.2 (4)
C7—N1—C6—C5 −177.1 (4) C10—C9—C14—C13 −2.7 (6)
Cd1—N1—C6—C5 11.3 (6) N3—C9—C14—C13 177.7 (3)
C7—N1—C6—C1 0.9 (4) C10—C9—C14—N4 178.3 (3)
Cd1—N1—C6—C1 −170.7 (2) N3—C9—C14—N4 −1.4 (4)
C4—C5—C6—N1 177.6 (4) C9—N3—C15—N4 −0.2 (4)
C4—C5—C6—C1 −0.2 (6) Cd1—N3—C15—N4 175.6 (2)
N2—C1—C6—N1 −0.6 (4) C9—N3—C15—C16 −179.7 (4)
C2—C1—C6—N1 −179.5 (3) Cd1—N3—C15—C16 −3.9 (6)
N2—C1—C6—C5 177.6 (4) C14—N4—C15—N3 −0.6 (4)
C2—C1—C6—C5 −1.3 (6) C14—N4—C15—C16 178.9 (4)
C6—N1—C7—N2 −0.9 (4) C15—N3—Cd1—N1 −4.6 (3)
Cd1—N1—C7—N2 169.9 (2) C9—N3—Cd1—N1 170.6 (2)
C6—N1—C7—C8 177.7 (4) C15—N3—Cd1—Br1 123.7 (3)
Cd1—N1—C7—C8 −11.5 (6) C9—N3—Cd1—Br1 −61.0 (3)
C1—N2—C7—N1 0.5 (4) C15—N3—Cd1—Br2 −117.1 (3)
C1—N2—C7—C8 −178.1 (4) C9—N3—Cd1—Br2 58.1 (3)
C15—N3—C9—C10 −178.6 (4) C7—N1—Cd1—N3 112.4 (3)
Cd1—N3—C9—C10 5.1 (5) C6—N1—Cd1—N3 −78.2 (3)
C15—N3—C9—C14 1.0 (4) C7—N1—Cd1—Br1 −11.1 (4)
Cd1—N3—C9—C14 −175.3 (2) C6—N1—Cd1—Br1 158.3 (2)
C14—C9—C10—C11 1.3 (5) C7—N1—Cd1—Br2 −133.3 (3)
N3—C9—C10—C11 −179.1 (3) C6—N1—Cd1—Br2 36.2 (3)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N2—H2···Br1i 0.86 2.88 3.495 (4) 130
N4—H4···Br2ii 0.86 2.77 3.563 (4) 155

Symmetry codes: (i) −x+1, y−1/2, −z+3/2; (ii) −x, y−1/2, −z+3/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: KQ2008).

References

  1. Barros-García, F. J., Bermalte-García, A., Luna-Giles, F., Maldonado-Rogado, M. A. & Viñuelas-Zahínos, E. (2005). Polyhedron, 24, 1764–1772.
  2. Higashi, T. (1995). ABSCOR Rigaku Corporation, Tokyo, Japan.
  3. Rigaku (2004). RAPID-AUTO Rigaku Corporation, Tokyo, Japan.
  4. Roderick, W. R., Nordeen, C. W., Von Esch, A. M. & Appell, R. N. J. (1972). J. Med. Chem. 15, 655–658. [DOI] [PubMed]
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  6. Wang, X., Li, Y.-X., Liu, Y.-J., Yang, H.-X. & Zhang, C.-C. (2010). Acta Cryst. E66, m1207. [DOI] [PMC free article] [PubMed]
  7. Yang, H.-X., Wang, X., Xie, C.-X., Li, X.-F. & Liu, Y.-J. (2011). Acta Cryst. E67, m1149. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813024549/kq2008sup1.cif

e-69-0m536-sup1.cif (25.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813024549/kq2008Isup2.hkl

e-69-0m536-Isup2.hkl (175.8KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813024549/kq2008Isup3.cdx

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

RESOURCES