Table 3. ANOVA results for the main effects of exon-type and time-point and the interaction term to test for differential expression of constitutive and/or alternative exons over the time course from 2009 multi-transcript genes [model (2)].
| Main effects [model (2)] | Interaction (exon type × time point) | |||
|---|---|---|---|---|
| FDR level | Exon type | Time point | Model (2) | Model (3)a |
| <0.05 | 1873 | 345 | 9 | 56 |
| <0.1 | 28 | 38 | 1 | 20 |
| <0.2 | 23 | 75 | 3 | 24 |
Model (3) was fit with the constitutive exons as a covariate for 1094 genes with constitutive exon(s) and at least two alternative exons (interaction term of interest shown).
a
Significance thresholds are based on type III SS. All model terms for (3) are given in Table S9.