State of Knowledge and Data Gaps of Middle East Respiratory Syndrome Coronavirus (MERS-CoV) in Humans

The WHO MERS-CoV Research Group

doi:10.1371/currents.outbreaks.0bf719e352e7478f8ad85fa30127ddb8

. 2013 Nov 12;5:ecurrents.outbreaks.0bf719e352e7478f8ad85fa30127ddb8. [Version 1] doi: 10.1371/currents.outbreaks.0bf719e352e7478f8ad85fa30127ddb8

State of Knowledge and Data Gaps of Middle East Respiratory Syndrome Coronavirus (MERS-CoV) in Humans

The WHO MERS-CoV Research Group

PMCID: PMC3828229 PMID: 24270606

Abstract

Background: Between September 2012 and 22 October 2013, 144 laboratory-confirmed and 17 probable MERS-CoV cases from nine countries were notified to WHO. Methods: We summarize what is known about the epidemiology, virology, phylogeny and emergence of MERS-CoV to inform public health policies. Results: The median age of patients (n=161) was 50 years (range 14 months to 94 years), 64.5% were male and 63.4% experienced severe respiratory disease. 76.0% of patients were reported to have ≥1 underlying medical condition and fatal cases, compared to recovered or asymptomatic cases were more likely to have an underlying condition (86.8% vs. 42.4%, p<0.001). Analysis of genetic sequence data suggests multiple independent introductions into human populations and modelled estimates using epidemiologic and genetic data suggest R<sub>0</sub> is <1, though the upper range of estimates may exceed 1. Index/sporadic cases (cases with no epidemiologic-link to other cases) were more likely to be older (median 59.0 years vs. 43.0 years, p<0.001) compared to secondary cases, although these proportions have declined over time. 80.9% vs. 67.2% of index/sporadic and secondary cases, respectively, reported ≥1 underlying condition. Clinical presentation ranges from asymptomatic to severe pneumonia with acute respiratory distress syndrome and multi-organ failure. Nearly all symptomatic patients presented with respiratory symptoms and 1/3 of patients also had gastrointestinal symptoms. Conclusions: Sustained human-to-human transmission of MERS-CoV has not been observed. Outbreaks have been extinguished without overly aggressive isolation and quarantine suggesting that transmission of virus may be stopped with implementation of appropriate infection control measures.

Background

The first case of a novel coronavirus, now called Middle East respiratory syndrome coronavirus (MERS-CoV), was identified in a patient with acute pneumonia and renal failure in Jeddah, Kingdom of Saudi Arabia (KSA) in June 2012 ¹. Following identification of the virus a subsequent case from Qatar who was being treated in the UK was identified ² and a hospital cluster of pneumonia among health care workers in Zarqa, Jordan in March/April of 2012 was retrospectively determined to have been caused by the same virus ³. Since then, as of 22 October 2013, 144 laboratory-confirmed and 17 probable MERS-CoV cases from nine countries (Figure 1a) have been notified to the World Health Organization (WHO) ³ ^, ⁴ ^, ⁵ ^, ⁶ in accordance with the provisions of the International Health Regulations (2005).

WHO, in coordination and cooperation with its affected member states, and an informal network of academic and public health researchers, has compiled available information on MERS-CoV. Here we summarize what is currently known about the epidemiology of MERS-CoV, including the geographic spread and timeline of cases, characteristics and severity of cases, clinical features and treatment strategies, description of clusters, and the epidemic potential of MERS-CoV; and the virology, phylogeny and emergence of the MERS-CoV virus. In addition to summarizing the published literature, we also present summary data on the known laboratory-confirmed and probable cases of MERS-CoV infection that have been reported to WHO. This compilation represents our current state of knowledge of MERS-CoV and the disease it causes and summarizes information needed to inform public health policies for surveillance, preparedness, and response.

a) Country of probable exposure of laboratory-confirmed MERS-CoV cases b) Number of laboratory confirmed MERS-CoV cases by country of probable exposure — Bars do not represent the exact location of cases. The most detailed level of information for place was mapped when possible. For cases where only the province name was reported, the geographic centre of that province is mapped.

Epidemiology of MERS-CoV infection in humans

Our understanding of the epidemiology and clinical presentation of MERS-CoV infection is heavily influenced by the recommended surveillance strategies for case detection, which largely focus on severe illness and virologic testing ⁴, and published detailed investigations of cases. Contact tracing activities allow for the detection of confirmed cases with a broader spectrum of illness. Confirmed cases include only those with a positive polymerase chain reaction (PCR) in accordance with the laboratory guidelines for virus genetic material ⁷. Probable cases are those that have a link with a confirmed case and a clinically compatible illness but without definitive laboratory confirmation. Antibody testing is not currently being used for confirmatory testing. In addition to summarizing data related to both confirmed and probable cases, we also examined the differences between secondary cases discovered around sporadic cases as a result of contact tracing. While the majority of cases now reported have likely acquired infection through human-to-human transmission the primary sporadic cases in clusters are more likely to have been acquired through contact with non-human sources of the virus. The differences between them may provide clues as to relevant exposures that result in infection.

Characteristics of MERS-CoV Cases

Between April 2012 and 22 October 2013, 144 laboratory-confirmed MERS-CoV cases have been identified in nine countries: France, Germany, Italy, Jordan, KSA, Qatar, Tunisia, United Arab Emirates (UAE), and the United Kingdom (UK) (Figure 1a). All cases have had a direct or indirect link with the Middle East. In KSA (Figure 1b), from which more than 80% of laboratory-confirmed cases have been reported, cases have been reported from six of its 13 provinces (Al Qasim, Al Madinah, Ar Riyad, Asir, Ash Sharaqiyah and Makkah)⁶ ^, ⁸ ^, ⁹. In addition, 17 probable cases have been identified in Jordan (n=11), KSA (n=4) and Italy (n=2) ³ ^, ⁵ ^, ⁶ ^, ¹⁰ and are included in our analyses. The number of cases reported rose markedly starting in April 2013 compared with the previous six months since virus discovery, with 21 laboratory-confirmed cases reported to have symptom onset in April, 22 in May, 22 cases in June, 14 cases in July, 20 cases in August, 28 cases in September, and 4 cases in October 2013 (Figure 2)

Epidemiologic Curve of MERS-CoV Confirmed (n=144) and Probable Cases (n=17) — *After week 24 in 2013, 58 cases were not reported with date for symptom onset. For these 58 cases, the symptom onset date was estimated (date of reporting to WHO minus median of difference between onset date and reporting date of those cases that had both of these dates available; the median difference was calculated by country). Cases are reported by the location where infection is believed to have occurred. Figure includes cases reported as of 22 October 2013.

Overall, the median age of MERS-CoV patients is 50 years (range 14 months to 94 years) and 64.5% of patients were male (Table 1). As of 22 October 2013, WHO has confirmation that 65 patients (40.4%), of whom 62 were confirmed and 3 probable, have died, of these 4 deaths could not be matched up to specific cases due to a lack of identifying information. Outcome is unknown for 45 patients, either because they are still in hospital at the time of writing, their outcome has not been reported, or we are unable to match a fatal case to our line list (n=4). Age and sex varied by outcome, with a higher median age and proportion of male sex among patients who died (58 years old and 80.0%, respectively) versus those who recovered or were asymptomatic (34 years old and 60.0%, respectively).

The majority (63.4%) of patients experienced severe respiratory disease while 29.8% were reported to have non-severe disease, including 18 cases reported as asymptomatic. Severe disease was defined as admission to an intensive care unit [ICU]; use of extracorporeal membrane oxygenation (ECMO), mechanical ventilation, or vasopressors; or reported by the member state as “critical” or “severe”; or who died. Severity is unknown for 6.8% of patients. Fifty-three of the 114 hospitalized patients, for whom we had data, died.

Seventy-six per cent of patients are reported to have at least one underlying medical condition and fatal cases were more likely to have an underlying condition (86.8% among fatal cases vs. 42.4% among recovered or asymptomatic cases, p<0.001, Table 1). Of those who were reported to have at least one comorbid condition, specific comorbid diagnoses were not reported for 47.8% of patients. However, of those with data, the most commonly reported conditions include chronic renal failure (13.3%), diabetes (10.0%), and heart disease (7.5%). Of five patients who were immunocompromised, two reported use of immunosuppressive medication, two reported multiple myeloma, and solid tissue cancer was reported in one patient. A published analysis of 47 confirmed patients from KSA, most of whom were part of the Al Hasa cluster, found that almost all (45/47) had at least one underlying condition, including diabetes, hypertension, chronic cardiac disease and chronic renal disease ⁹.

We classified 51 patients as likely being sporadic (n=29) or “index” cases (n=22) based on the following criteria: 1) a report of having no exposure to other known cases, 2) occurring in an area with no previous cases or no cases within the last 2 months, or 3) reported as the index case in a cluster or being the first case reported with symptoms in a cluster. Ninety-five cases were classified as secondary cases with epidemiologic links to other confirmed MERS-CoV cases (Table 1). For 17 cases, epidemiological classifications remain unclear as no information about contact with other cases is available.

Seventy-three per cent of index/sporadic cases were male, as compared with 60.0% of secondary cases, though this difference was not significant. Notably, this proportion has declined over time; more than 90% of the earliest cases reported were male. Index/sporadic cases were older (median age 59 years vs. 43 years, p<0.001), and more likely to experience severe disease requiring hospitalization or advanced care (90.2% vs. 49.5%, p<0.001) (Table 1). A similar proportion of index/sporadic cases and secondary cases reported at least one underlying condition (80.9% and 67.2%, respectively), and diabetes, heart disease and immunosuppression were most often reported among index/sporadic cases.

The majority (90.2%) of index/sporadic cases had severe or fatal disease (Table 1). However, the proportion with reported chronic renal failure was higher among secondary cases, which is related to the large outbreak related to haemodialysis units in hospitals in Al Hasa ¹⁰. Only one of the secondary cases (n=95) that occurred outside of the Al Hasa outbreak reported chronic renal failure.

Among secondary cases, 13 MERS-CoV cases are believed to have been infected in household settings, 60 in health care settings (HCS), and one in a workplace other than a HCS. For twenty-one cases, the place of transmission was not reported. Cases associated with HCS in Jordan, France, KSA, UK, UAE, and Qatar ³ ^, ¹⁰ ^, ¹¹ ^, ¹² included HCW (30 cases) treating MERS-CoV patients, patients seeking treatment in hospitals for conditions unrelated to MERS-CoV (19 cases) and visitors (6 cases). The type of exposure of five additional secondary cases associated with HCS is unknown. In households and the non-HCS workplace, secondary cases occurred among family contacts or co-workers. The specific types of exposure resulting in transmission are currently unknown.

Only 49 cases have information on exposure to animals, including owning or visiting a farm with camels, goats, sheep, chickens, ducks or other animals. Of these, exposure to animals has been reported for only a few cases (n=7; Table 1).

graphic file with name MERSCoV-Table1-lbl.jpg

Clinical Features of MERS-CoV infection in Humans

Data suggest that the clinical presentation of MERS-CoV infection ranges from asymptomatic to very severe pneumonia with the acute respiratory distress syndrome (ARDS), septic shock and multi-organ failure resulting in death. At least two cases had a consumptive coagulopathy during the course of their illness. The clinical course is more severe in patients with immunocompromising conditions and more likely to be mild in individuals without underlying medical conditions (Table 1). Only three cases have been reported in children under 5 years of age ⁴.

Typically, the disease starts with fever and cough ³ ^, ⁹ ^, ¹⁰ ^, ¹¹, chills, sore throat, myalgia and arthralgia² ^, ⁵ ^, ⁹ ^, ¹¹, followed by dyspnoea ⁵ ^, ⁹ ^, ¹⁰, and rapidly progresses to pneumonia, often requiring ventilatory and other organ support. Nearly all symptomatic patients presented with respiratory symptoms; however, one immunocompromised patient was initially admitted to hospital with fever, chills and diarrhoea and later found to have pneumonia [11]. At least one-third of patients also had gastrointestinal symptoms, such as vomiting and diarrhoea ⁵ ^, ⁹ ^, ¹⁰ ^, ¹¹. Almost half of the patients developed pneumonia (44.1%), and 20 (12.4%) developed ARDS (Table 1).

Chest radiograph findings vary but are consistent with viral pneumonitis and ARDS: bilateral hilar infiltration, uni- or bilateral patchy densities or infiltrates, segmented or lobar opacities, ground glass appearance, and small pleural effusions have been described. Lower lobes tend to be affected more than upper lobes early in the course of illness; radiographic appearance progresses rapidly. Computed tomographic scans have shown interstitial infiltrates and consolidation compatible with ARDS in severe cases. In some severe cases, renal failure developed concurrently with respiratory failure.

Common laboratory findings include leucopoenia, particularly lymphopaenia ¹ ^, ³ ^, ⁵ ^, ¹¹. Reports from a few cases found viral RNA in blood ¹¹, urine ¹³ and stool ¹³ but at much lower viral loads than in the respiratory tract. The viral load in upper respiratory tract specimens is general lower than in the lower respiratory specimens, though data are limited. Co-infection with other respiratory viruses (e.g., parainfluenza, rhinovirus, influenza A(H1N1)pdm09, herpes simplex, influenza B) has been reported in some patients and secondary nosocomially acquired bacterial infections (Klebsiella pneumoniae, Staphylococcus aureus, Acinetobacter sp., Candida sp.) have been reported in patients who received mechanical ventilation ¹ ^, ² ^, ¹² ^, ¹³.

The median times from symptom onset to hospitalization, admission to an ICU or to death are 4.0 days (range 0-16, n=62), 5.0 (1-15, n=35) and 11.5 days (4-298, n=40), respectively. The duration of hospitalization to either discharge or death was relatively short, with a median of 7.0 days (2-39, n=21) and 9.0 (2-293, n=24) days, respectively. One patient, who died after 298 days of symptom onset, had been treated with ECMO from the third week of illness ². Two additional cases died after 35 days or more in hospital, having undergone prolonged ECMO support.

Treatment

In the absence of pathogen-specific interventions, patient management largely depends on provision of organ support, and vigilance for and prevention of complications. In specific circumstances, additional interventions have included empiric use of broad-spectrum antimicrobial agents, antivirals (oseltamivir and/or acyclovir), and the addition of anti-fungal agents to minimize risk of co-infections with opportunistic pathogens.

Lung-protective ventilatory strategies for ARDS, cardiovascular support, antimicrobial therapy for co-infections, and renal replacement therapy for acute renal failure have been used ¹ ^, ² ^, ¹¹ ^, ¹³. Case reports of patients supported with ECMO are available for six patients, five of whom have died ² ^, ¹¹ ^, ¹². No case-control data exist to evaluate the effectiveness of such interventions.

Many patients with severe disease have been treated with systemic high-dose corticosteroids, which was intended to reverse the progression of respiratory distress and to prevent lung fibrosis. This appears to have been unsuccessful.

None of the antimicrobial agents used so far, including the antivirals, appear to be successful in improving severe progressive disease. A large number of pharmacological agents have been screened against MERS-CoV and several agents have shown inhibitory effects against MERS-CoV in cell cultures. Among the agents tested in vitro are interferons, cyclosporin A, ribavirin, nitazoxanide, immunoglobulins, lopinavir and SARS CoV convalescent plasma¹⁴ ^, ¹⁵ ^, ¹⁶ ^, ¹⁷ ^, ¹⁸. Currently, no clinical data support use of these agents. However, a recent study has found favorable outcomes in MERS-CoV infected rhesus macaques treated with ribavirin and interferon-alpha 2b^65.

Transmission of MERS-CoV

Clusters ^[1]

_{[1] WHO defines a “cluster” as two or more persons with onset of symptoms within the same 14 day period, and who are associated with a specific setting, such as a classroom, workplace, household, extended family, hospital, other residential institution, military barracks or recreational camp (WHO Interim Surveillance Recommendations, 2013).}

A number of the cases in France, Italy, Jordan, KSA, Tunisia, UAE, UK and Qatar have been reported in clusters ¹ ^, ⁴, providing evidence that human-to-human transmission has occurred in HCS, households, and the workplace (Table 2) ³ ^, ⁵ ^, ¹⁰ ^, ¹¹ ^, ¹² ^, ⁶⁴ . In France, Italy, Jordan, KSA, Qatar, Tunisia, UAE and UK, secondary cases were identified through intense case-finding and follow-up of contacts. Intensity of follow-up of close contacts of patients varies between countries and has included screening contacts for respiratory symptoms and evidence of infection either using reverse-transcriptase PCR (RT-PCR) or, in some situations, serologic assays (Table 2).

As the exposure that results in sporadic infection is unknown, it is impossible to estimate the incubation period in these cases. However, data for human-to-human transmission in the clusters are available from France ¹¹ ^, ¹⁹, UK ¹², Italy ²⁰, Tunisia ²¹, KSA¹⁰ and Jordan. The incubation period has been estimated to be just over five days, but could be as long as two weeks (median 5.2 days (95% CI: 1.9 to 14.7)¹⁰; 5.5 (95% CI: 3.6-10.2)²²). The incubation period for the primary cases who acquired infection from environmental or animal sources is unknown.

Transmission in all reported clusters has been observed to be limited, and current evidence from contact tracing suggests that transmission did not extend beyond close contacts into the community. Among clusters around exported cases travelling to France, UK, Italy, Germany and Tunisia from the Middle East, transmission to close contacts has been limited ⁶ ^, ¹¹ ^, ¹² ^, ²⁰ ^, ²³, and secondary attack rates among family members of patients in other clusters appear to be low³ ^, ⁵ ^, ⁶ ^, ¹⁰ ^, ¹² ^, ²⁴ ^, ²⁵ . Systematic implementation of infection prevention and control measures in reported clusters involving HCS has appeared to limit onward transmission to HCW and hospitalized patients ¹⁰ ^, ¹¹ ^, ¹².

In HCWs infected by exposure to patients, fewer underlying conditions and milder presentations have been described; however, 37.5% experienced severe disease and at least three died. None of the HCW secondary cases had reported underlying immunosuppression; however, two had hypertension and one had an unspecified underlying comorbid condition. Among secondary cases in HCS who were patients admitted to hospital for other conditions at the time of MERS-CoV infection (n=19), all had underlying conditions, 5.3% reported immunosuppressing conditions, all experienced severe disease, and 89.5% died.

graphic file with name MERSCoV-Table2-lbl.jpg

Epidemic Potential of MERS-CoV

Two groups have evaluated the transmission potential of the MERS-CoV virus by estimating the basic reproduction number (the number of secondary cases that one case would produce in a completely susceptible population, R₀)²² ^, ²⁶.

Breban and colleagues ²⁶ used the first 55 laboratory-confirmed cases of MERS-CoV reported to WHO to assess the inter-human transmissibility of MERS-CoV. The authors estimated R₀ from the distribution of sizes of case transmission trees seen so far and compared their estimate with that of early data from the SARS-CoV epidemic in 2003. Two scenarios were considered. With the most pessimistic scenario, the authors estimated MERS-CoV R₀ to be 0.69 (95% CI 0.50–0.92); by contrast, the R₀for SARS-CoV was 0.80 (0.54–1.13). The optimistic scenario resulted in a R₀ of 0.60 (0.42–0.80). The authors suggest that, based on their analyses using PCR-confirmed cases, MERS-CoV does not yet have pandemic potential.

Cauchemez and colleagues ²² undertook independent analyses to assess the transmissibility and extent of spread of MERS-CoV to date. Using publically available epidemiological data on 111 confirmed and probable MERS-CoV patients and genetic sequence data from 10 cases, the study found central estimates of R₀ between 0.8 and 1.3. This work suggests that current data are consistent with two scenarios: (a) a sustained epidemic in an animal reservoir with sporadic spill-over into humans, or (b) sustained human-to-human transmission causing a slowly growing human epidemic. They also used epidemiological and genetic data to evaluate the underlying scale of the epidemic so far. Analyses using numbers of exported cases of returning travellers from countries in the Middle East (n=4) and average length of visitor stays to Jordan, Qatar, KSA and UAE suggest that by now at least 900 symptomatic cases of MERS-CoV have occurred, implying substantial under-ascertainment of cases in the region. Genetic analyses suggest that approximately 17490 (IQR 3900-95000) infections in humans and in the reservoir(s) may have occurred between June 2012 and August 2013 ²².

An analysis of 21 genetic sequences from cases in KSA was compared to those already available in public databases and concluded that the genetic diversity of available sequences supported multiple introductions from a presumed zoonotic source, with subsequent human-to-human transmission²⁷. However, the authors could not exclude the possibility of unrecognized sustained transmission in humans associated with frequent movement of infected individuals to explain the observed genetic patterns

Animal Reservoir

Several lines of evidence support the hypothesis that the virus originates in animals. Limited phylogenetic analyses using genetic material collected from MERS-CoV patients’ specimens shows that MERS-CoV has a close genetic relationship with coronaviruses found in hedgehogs (Corman et al unpublished) and in bats in Southern China¹ ^, ²⁸, Europe²⁹ ^, ³⁰, Thailand³¹, Mexico³²,Ghana³⁰, and South Africa³³. A 190-nucleotide fragment of the RNA-dependent RNA polymerase gene was recovered from a faecal sample from a Taphozous perforatesbat collected in Bisha, KSA, near the home of the first MERS-CoV patient³⁴. The fragment had 100% nucleotide identity with a MERS-CoV recovered from the human case that occurred in that area.

Neutralizing antibodies against MERS-CoV or a similar virus have been described in camels from the Spanish Canary Islands, Oman³⁵ and from Egypt³⁶. Approximately 15% of sera from camels from the Spanish Canary Islands, 100% of sera from unrelated retired racing camels from Oman and more than 90% of dromedary camels from Egypt were found to have antibody titres reactive with MERS-CoV using a variety of methods, including neutralization. No viral genetic material was detected in a limited number of tested camel sera and faecal samples.

Virological Characteristics of MERS-CoV

MERS-CoV is an enveloped, single-stranded, positive-sense RNA virus that is a newly recognized species in lineage C of the genus Betacoronavirus within the subfamily Coronavirinae ¹ ^, ²⁸. The genome is approximately 30.1kb long and contains at least 10 predicted open reading frames (ORF) common to betacoronaviruses, which are expressed from seven subgenomic mRNAs²⁸. These ORFs mainly include ORF 1a/1ab, which encode for large replicase polyproteins containing conserved functional domains and several non-structural (NS) proteins of CoV, the spike-surface glycoprotein (S), the small-envelope (E) protein, the matrix (M) protein, and the nucleocapsid (N) protein.

Laboratory Testing of MERS-CoV

Initial detection of viral genome in human clinical samples was made using pancorona primers targeting highly conserved regions of the coronavirus genome. Specific assays for the detection of acute infection with MERS-CoV by real-time RT-PCR (rRT-PCR) have subsequently been developed. Several assays are now in widespread use, including those targeting a region upstream of the E gene (upE) or regions within ORF 1b (nsp14 protein)³⁷, ORF 1a (nsp6 protein)³⁹, and the nucleocapsid protein gene³⁸. The assays for the upE and the ORF 1a targets are considered equally sensitive, while the ORF 1b assay is considered less sensitive than the ORF 1a assay. The upE assay has been recommended for screening specimens with the ORF 1a assay or other specific gene targets being used for confirmation³⁹.

Currently, laboratory confirmation of a case is considered as a positive PCR result for at least two different specific targets on the MERS-CoV genome or one positive PCR result for a specific target on the MERS-CoV genome and an additional different PCR product sequenced, confirming identity to known sequences of MERS-CoV⁷. Two suitable targets for sequencing are an RNA-dependent RNA polymerase (RdRp) and nucleocapsid (N) protein genes. Serologic assays for MERS-CoV are under development by several laboratories.

Genetics and Emergence of MERS-CoV

Twenty-two whole sequences, and partial genome sequences from 9 additional cases, have been published in GenBank, from thirty different MERS-CoV infected patients (Table 3) ² ^, ³ ^, ¹⁰ ^, ¹² ^, ¹³ ^, ²² ^, ²³ ^, ²⁷ ^, ²⁸ ^, ²⁹. Phylogenetic trees have been published by several groups¹⁰ ^, ¹³ ^, ²² ^, ²⁹ and are not shown here.

Several estimates of the time frame of the emergence of MERS-CoV in humans have been developed using a variety of analytical tools with different statistical assumptions, and using both whole-genome sequences and individual genes derived from infections at different time points¹⁰ ^, ¹³ ^, ²² ^, ²⁷ ^, ²⁹. All suggest the emergence of MERS-CoV in mid-2011, with the range of possible dates ranging broadly from November 2009–April 2012. One study of 10 full genome sequences, including one from a French patient²², suggests the emergence in June 2011 with a narrower timeframe, from Sept 2010–Nov 2011 (Table 3). The study using most available sequences, estimates emergence in July 2011 with a broad credible interval, from July 2007 to June 2012²⁷ (Table 3). Future studies providing more genome sequences from humans and animals should add to our understanding of transmission patterns and increase the accuracy of the estimated genomic evolutionary rate.

graphic file with name MERSCoV-Table3-lbl.jpg

MERS-CoV - Host Interactions

The S protein of coronaviruses is responsible for binding to the host cell receptor. The DPP4 (dipeptidyl peptidase 4, also known as CD26)⁴⁰ ^, ⁴¹, has been identified as the functional cellular receptor for MERS-CoV, in contrast to the angiotensin-converting enzyme 2 (ACE2), used by the SARS-CoV⁴² and hCoV-NL63. DPP4 homologues permitting MERS-CoV infection are present in a variety of bat, pig, civet and rabbit cell lines, whereas cell lines of canine, feline, rodent, chicken and insect origin were not susceptible⁴² ^, ⁴³.

DPP4 is an exopeptidase and is involved in the regulation of chemokine and cytokine responses and in glucose metabolism⁴⁴. Upon binding, the viral entry of MERS-CoV involves virus-cell fusion, which can be either activated by type II transmembrane serine proteases TMPRSS2 or mediated by low pH and endosomal cathepsins⁴⁵. The receptor-binding domain (RBD) in the S protein responsible for binding to DPP4 has also been mapped. The RBD-S interaction falls within residues 358-662 of the S1 domain, where antibodies to this domain were observed to efficiently neutralize infection⁴⁵ ^, ⁴⁶ ^, ⁴⁷. Crystal structures of this binding interface showed a homologous core subdomain but much variation in the external receptor binding motif region, compared with that of SARS-CoV⁴¹.

In humans, DPP4 is primarily expressed on the epithelial cells in kidney, small intestine, liver and prostate, and on activated leukocytes¹³ ^, ⁴⁰. MERS-CoV has been shown to infect non-ciliated bronchial epithelium, bronchiolar epithelial cells, alveolar epithelial cells, endothelial cells, and lung ex vivo organ cultures at least as well as SARS-CoV⁴⁰ ^, ⁴⁸ ^, ⁴⁹ ^, ⁵⁰. Receptor preference and underlying tissue tropism may influence the severity of highly pathogenic coronaviruses compared with HCoV-229E infection, which is usually milder and has limited infectivity of these lower respiratory tract cells. However, cellular tropism does not completely account for severity of disease.

Cell-based studies have shown that MERS-CoV, like other coronaviruses, evades innate immune recognition, perhaps accounting for the high proportion of cases observed with severe disease¹⁶ ^, ¹⁸ ^, ⁴⁸ ^, ⁴⁹. However, MERS-CoV was observed to have higher sensitivity to pegylated interferon treatment, compared with SARS-CoV. This has been hypothesized to be due to the lack of a SARS-CoV ORF6 homologue in MERS-CoV, which has been shown to inhibit the nuclear translocation of p-STAT1 and activation of downstream antiviral genes²⁸ ^, ⁵¹. MERS-CoV was observed to induce a massive dysregulation of the host cellular transcriptome to a much greater extent and in a shorter time after infection than SARS-CoV, resulting in profound apoptosis of surrounding cells¹⁷ ^, ⁴⁹ ^, ⁵⁰. This involves the greater suppression of the antigen presentation pathway in MERS-CoV compared with SARS-CoV. This phenomenon suggests that SARS-CoV and MERS-CoV may activate different cellular mechanisms for viral replication and infection, and may delay the adaptive response in the infected host, particularly the immunocompromised patients¹⁷.

Discussion and gaps in knowledge

Much has been learned about the MERS-CoV and the disease syndrome it causes in humans since the first case was reported in September 2012, but many critical questions remain unanswered. From the time of the first cases reported to WHO, it was suspected that the virus was of animal origin and subsequent observations since that time have reinforced this view. Current evidence suggests that the virus is most closely related genetically to viruses found in a number of species of old world and new world insectivorous bats¹ ^, ²⁸ ^, ²⁹ ^, ³⁰ ^, ³¹ ^, ³² ^, ³³ ^, ³⁴. The finding of a gene fragment in a Saudi bat³⁴, which is homologous with that of viruses from humans, suggests that bats may be the ultimate reservoir of virus; however, it is very possible that another intermediate animal reservoir could be involved, as was the case with SARS and with Nipah virus in Malaysia. Serological data suggest infections with MERS-CoV or a closely related virus in camels, however the virus itself has not been detected in camels³⁶ ^, ³⁵. Currently, all known cases have a direct or indirect link to the Middle East. Although surveillance is more limited in some parts of the world, large clusters like those seen in Al Hasa, KSA and Zarqa, Jordan have not been observed elsewhere. This apparent restriction of transmission from non-human sources to one area of the world may provide clues to the source of exposures. The most likely explanations are either a restriction in the range of the putative host species or exposures related to human behaviours that occur only in the area. Regardless of the reservoir, however, the primary question to be answered is the route of transmission from animal to human. Sporadic and index cases provide the best opportunity for identifying exposures of interest as these are the infections most likely acquired from non-human exposures. The high predominance of older individuals among these cases could be a clue to exposures and demands further investigation using structured case-control studies⁵³. The recent increase in numbers of sporadic cases associated with a change in the proportion of male and female cases is concerning. While it could represent changes in surveillance strategies, it may also signal a change in the behaviour of the virus, an expansion of the reservoir, or changes in human exposures.

It is now clear that the virus does transmit from person to person. However, sustained human-to-human transmission has not been observed. The relative ease with which outbreaks have been extinguished without resorting to overly aggressive isolation and quarantine measures and the limited secondary transmission around clusters, suggest that transmission of virus may be readily stopped.

Genetic sequence data indicate that multiple independent introductions into human populations have occurred. In addition, modelled estimates of R₀ suggest that R₀ is <1, though the upper range of estimates may slightly exceed 1²² ^, ²⁶. Reports of mild and asymptomatic cases discovered through investigations and testing of contacts of confirmed cases, suggest that the focus on severe disease as a surveillance strategy may miss significant numbers of milder or asymptomatic cases²². The importance of these milder cases in transmission, however, is uncertain and needs to be assess with seroepidemiologic studies⁵⁴. Evidence from SARS, however, suggests that asymptomatic cases did not transmit infection⁵⁵. It appears likely that the presence of comorbid conditions, particularly when found in high concentrations such as in HCS, can facilitate transmission.

The basic clinical appearance and course of severe cases seen since the earliest reports has not substantially changed; however, it is now clear that milder and even asymptomatic presentations do occur and that the case-fatality rate is lower than observed. The acute renal failure observed in many cases, especially those reported early on, has been primarily associated with hemodynamic compromise, suggesting that it is likely a secondary process. However, receptors for the virus do occur in renal tissue and viral RNA has been detected at low titres in urine. It is important to note that although the primary site of infection has been the respiratory tract, approximately one-third of patients have experienced gastrointestinal symptoms and low titres of virus have been detected in faeces. While generally this is not likely useful for diagnostic purposes, this finding supports current recommendations for adding contact precautions in HCS and may have implications for infection control in the community. The observed differences in proportion of cases that are severe between primary (index/sporadic) and secondary cases is likely a reflection of the surveillance strategy that focuses on severe disease for identifying primary cases and the additional case-finding carried out around them. However, the possibility that the virulence of the virus is different when transmitted from humans than it is when transmitted from non-human sources cannot be excluded based on available evidence. The presence of a pre-existing chronic medical condition likely increases the chance of severe outcome and death.

At this time, treatment for MERS-CoV remains supportive. A number of licensed pharmaceuticals have been tested in vitro and testing is currently underway in vivo; however, the lack of an appropriate animal model is hampering these efforts. Clinical observation of patients infected with MERS-CoV and experience with other infectious diseases suggest that high-dose corticosteroids are not effective in management of the disease and may be contraindicated for other reasons. Considerable controversy exists about the value of high-dose corticosteroids in the management of ARDS. There is substantial evidence of harm, and no evidence of benefit, from high-dose corticosteroids when used for SARS and influenza A(H1N1)pdm09⁴ ^, ⁵⁶ ^, ⁵⁷ ^, ⁵⁸ ^, ⁵⁹ ^, ⁶⁰. For this reason, WHO guidance does not recommend the systemic use of high-dose corticosteroids for MERS-CoV treatment, with a few exceptions limited to, for example, patients with asthma or vasopressor refractory shock⁶¹. It may be that convalescent sera holds some promise until an effective pharmaceutical can be identified. If indeed convalescent sera proves efficacious, specific human monoclonal antibodies may also be considered. Sharing of clinical information and case-management experience is critical to better understand the natural history of disease for MERS-CoV⁶² and improve management guidance. In addition to infection prevention and control measures aiming to minimize transmission of MERS-CoV⁶³, attention should be paid to rigorous implementation of safe practices to prevent acquisition of bacterial and fungal pathogens associated with health care.

Many critical questions about MERS-CoV and its related disease remain. First among these is the nature of the exposures that result in human infection. Although an animal reservoir of the virus is the most likely hypothesis, the route of transmission could be either direct or indirect contact with the reservoir or an intermediate host, including consumption of a contaminated food product, or contact with a contaminated fomite. Thus far, spread among humans appears to be relatively easy to extinguish with conventional infection control measures and has not required the aggressive measures that were used to contain SARS. Prevention of transmission from the putative animal reservoir to humans is the critical step needed to halt the ongoing spread of this virus. The answer to how to achieve this and other remaining questions requires formal, structured, multinational collaborative research studies, including the development and implementation of effective surveillance strategies.

Members of the MERS-CoV Research Group

Mohammad Mousa Abdallat

Ministry of Health

Amman, Jordan

Fekri Abroug

Intensive Care Department

Fattouma Bourguiba Hospital

Monastir, Tunisia

Said H.S. Al Dhahry

Department of Laboratory Medicine

Hamad Medical Corporation

Doha, Qatar

Mohd Mohd Alhajri

Supreme Council of Health

Doha, Qatar

Rafat Al-Hakeem

Public Health Directorate

Ministry of Health

Riyadh, Saudi Arabia

Farida Ismail Al Hosani

Health Authority Abu Dhabi

United Arab Emirates

Sultan Mohammed Abdalla Al Qasrawi

Communicable Disease Directorate

Ministry of Health

Amman, Jordan

Hamad Eid Al-Romaihi

Supreme Council of Health

Doha, Qatar

Abdullah Assiri

Public Health Directorate

Ministry of Health

Riyadh, Saudi Arabia

J Kenneth Baillie

The Roslin Institute

University of Edinburgh

Edinburgh, Scotland

Peter Karim Ben Embarek

Food Safety and Zoonoses

World Health Organization

Geneva, Switzerland

Afif Ben Salah

Institut Pasteur de Tunis

Tunis, Tunisia

Benjamin Blümel

Department of Infectious Disease Epidemiology

Robert Koch Institute

Berlin, Germany

Thomas Briese

Center for Infection and Immunity and Department of Epidemiology

Columbia University

Mailman School of Public Health

New York, New York, USA

Udo Buchholz

Department of Infectious Disease Epidemiology

Robert Koch Institute

Berlin, Germany

Sebastien Bruno Francois Cognat

Support to IHR Capacity Development

World Health Organization

Geneva, Switzerland

Gabriel N. Defang

Head, Viral & Zoonotic Diseases Research Program

NAMRU3 - U.S. Naval Medical Research Unit No. 3, Cairo, Arab Republic of Egypt

Stéphane De La Rocque

IHR Monitoring, Procedures and Information

World Health Organization

Geneva, Switzerland

Isabella Donatelli

National Influenza Centre

Department of Infectious, Parasitic and Immune-Mediated Diseases

Istituto Superiore di Sanità

Roma, Italy

Christian Drosten

Institute of Virology

University of Bonn Medical Centre

Bonn, Germany

Patrick Anthony Drury

Global Alert and Response Operations

World Health Organization

Geneva, Switzerland

Sergey Romualdovich Eremin

AMR, Infection Control and Publications

World Health Organization

Geneva, Switzerland

Neil M. Ferguson

MRC Centre for Outbreak Analysis and Modelling

Department of Infectious Disease Epidemiology

Imperial College London

London, United Kingdom

Arnaud Fontanet

Emerging Diseases Epidemiology Unit

Institut Pasteur

Paris, France

Pierre B.H. Formenty

Control of Epidemic Diseases

World Health Organization

Geneva, Switzerland

Ron A.M. Fouchier

Department of Virology

Erasmus MC

Rotterdam, Netherlands

Christine Qiuhan Gao

Biodefence Centre

Singapore Armed Forces

Singapore

Erika Garcia

Global Alert and Response Operations

World Health Organization

Geneva, Switzerland

Susan I. Gerber

Division of Viral Diseases/ Epidemiology Branch

National Center for Immunization and Respiratory Diseases

Centers for Disease Control and Prevention

Atlanta, USA

Benoît Guery

Maladies Infectieuses

CHRU

Lille, France

Bart L. Haagmans

Viroscience Lab

Erasmus MC

Rotterdam, Netherlands

Aktham Jeries Haddadin

National Laboratories Directorate

Ministry of Health

Amman, Jordan

Maxwell Charles Hardiman

IHR Monitoring, Procedures and Information

World Health Organization

Geneva, Switzerland

Lisa E Hensley

National Institutes of Health

Frederick, Maryland, USA

Stéphane Alexandre Louis Hugonnet

Global Alert and Response Operations

World Health Organization

Geneva, Switzerland

David SC Hui

The Chinese University of Hong Kong

Department of Medicine & Therapeutics

Prince of Wales Hospital

Hong Kong, SAR

Nicolas Isla

Global Alert and Response Operations

World Health Organization

Geneva, Switzerland

William B. Karesh

Executive Vice President for Health and Policy

EcoHealth Alliance

New York, New York, USA

Marion Koopmans

National Institute of Public Health and the Environment

Bilthoven, Netherlands

Anna Kuehne

Department of Infectious Disease Epidemiology

Robert Koch Institute

Berlin, Germany

W. Ian Lipkin

Center for Infection and Immunity

Columbia University

New York, New York, USA

Ali R. Mafi

Pandemic and Epidemic Diseases

World Health Organization Regional Office for the Eastern Mediterranean

Cairo, Egypt

Mamunur Malik

Pandemic and Epidemic Diseases

World Health Organization Regional Office for the Eastern Mediterranean

Cairo, Egypt

Jean-Claude Manuguerra

Laboratory for urgent response to biological threats

Institut Pasteur

Paris, France

Ziad Memish

Deputy Minister of Health

Ministry of Health

Riyadh, Saudi Arabia

Anthony Wayne Mounts

Global Influenza Programme

World Health Organization

Geneva, Switzerland

Elizabeth Mumford

Food Safety and Zoonoses

World Health Organization

Geneva, Switzerland

Langoya Opoka

Pandemic and Epidemic Diseases

World Health Organization Regional Office for the Eastern Mediterranean

Cairo, Egypt

Ab Osterhaus

Viroscience Lab, Erasmus MC

Rotterdam, Netherlands

Christopher John Oxenford

Support to IHR Capacity Development

World Health Organization

Geneva, Switzerland

Junxiong Pang

Centre for Infectious Disease Epidemiology and Research

Saw Swee Hock School of Public Health

National University of Singapore

Genome Institute of Singapore

Singapore

Richard Pebody

Respiratory Diseases Department

Centre for Infectious Disease Surveillance and Control

Public Health England

London, United Kingdom

J. S. Malik Peiris

School of Public Health

The University of Hong Kong

Hong Kong, SAR

Bruce Jay Plotkin

IHR Monitoring, Procedures and Information

World Health Organization

Geneva, Switzerland

Gilles Poumerol

IHR Monitoring, Procedures and Information

World Health Organization

Geneva, Switzerland

Chantal Reusken

National Institute of Public Health and the Environment

Bilthoven, Netherlands

Giovanni Rezza

Director, Department of Infectious Diseases

Istituto Superiore di Sanità

Roma, Italy

Cathy Ellen Roth

Health Security and the Environment Cluster

Department of Pandemic and Epidemic Diseases

Department of Global Capacities, Alert and Response

World Health Organization

Geneva, Switzerland

Nahoko Shindo

AMR, Infection Control and Publications

World Health Organization

Geneva, Switzerland

Alice M. Shumate

Centers for Disease Control and Prevention

Atlanta, Georgia, USA

Molly Siwula

Global Influenza Programme

World Health Organization

Geneva, Switzerland

Amine Slim

National Influenza Center

Charles Nicolle Hospital

Tunis, Tunisia

Catherine Smallwood

Global Alert and Response Operations

World Health Organization

Geneva, Switzerland

Sylvie van der Werf

Unit of Molecular genetics of RNA viruses

Institut Pasteur, CNRS

University Paris Diderot Sorbonne Paris Cité

Paris, France

Maria D. Van Kerkhove

MRC Centre for Outbreak Analysis and Modelling

Department of Infectious Disease Epidemiology

Imperial College London

London, United Kingdom

Maria Zambon

Reference Microbiology Services

UK Public Health England

London, England

Correspondence

Anthony W. Mounts

Global Influenza Programme, World Health Organization, Geneva, Switzerland

Email: mountsa@who.int; Telephone: +41227911062

The opinions expressed in this article are those of the authors and members of the working group and do not necessarily reflect those of the institutions or organizations with which they are affiliated.

Contributor Information

The WHO MERS-CoV Research Group:

Mohammad Mousa Abdallat, Fekri Abroug, Said Hamed Al-Dhahry, Mohammed M. Al-Hajri, Rafat Al-Hakeem, Farida Ismail AlHosani, Sultan Mohammed Abdalla Al Qasrawi, Hamad Eid Al-Romaihi, Abdullah Assiri, J Kenneth Baillie, Peter Karim Ben Embarek, Afif Ben Salah, Benjamin Blümel, Thomas Briese, Udo Buchholz, Sebastien Bruno Francois Cognat, Gabriel N. Defang, Stéphane De La Rocque, Isabella Donatelli, Christian Drosten, Patrick A. Drury, Sergey R. Eremin, Neil M. Ferguson, Arnaud Fontanet, Pierre B.H. Formenty, Ron A.M. Fouchier, Christine Q Gao, Erika Garcia, Susan Gerber, Benoît Guery, Bart L. Haagmans, Aktham Jeries Haddadin, Maxwell C. Hardiman, Lisa E. Hensley, Stéphane Hugonnet, David SC Hui, Nicolas Isla, William Karesh, Marion Koopmans, Anna Kuehne, W. Ian Lipkin, Ali R. Mafi, Mamunur Malik, Jean-Claude Manuguerra, Ziad Memish, Anthony W. Mounts, Elizabeth Mumford, Langoya Opoka, Ab Osterhaus, Christopher J. Oxenford, Vincent Pang, Richard Pebody, J. S. Malik Peiris, Bruce Jay Plotkin, Gilles Poumerol, Chantal Reusken, Giovanni Rezza, Cathy E. Roth, Nahoko Shindo, Alice M. Shumate, Molly A. Siwula, Amine Slim, Catherine Smallwood, Sylvie van der Werf, Maria D. Van Kerkhove, and Maria Zambon

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PERMALINK

State of Knowledge and Data Gaps of Middle East Respiratory Syndrome Coronavirus (MERS-CoV) in Humans

Abstract

Background

a) Country of probable exposure of laboratory-confirmed MERS-CoV cases b) Number of laboratory confirmed MERS-CoV cases by country of probable exposure.

Epidemiology of MERS-CoV infection in humans

Epidemiologic Curve of MERS-CoV Confirmed (n=144) and Probable Cases (n=17) .

Transmission of MERS-CoV

Virological Characteristics of MERS-CoV

Discussion and gaps in knowledge

Members of the MERS-CoV Research Group

Correspondence

Contributor Information

References

ACTIONS

PERMALINK

RESOURCES

Cite

Add to Collections

PERMALINK

State of Knowledge and Data Gaps of Middle East Respiratory Syndrome Coronavirus (MERS-CoV) in Humans

Abstract

Background

a) Country of probable exposure of laboratory-confirmed MERS-CoV cases b) Number of laboratory confirmed MERS-CoV cases by country of probable exposure.

Epidemiology of MERS-CoV infection in humans

Epidemiologic Curve of MERS-CoV Confirmed (n=144) and Probable Cases (n=17) .

Transmission of MERS-CoV

Virological Characteristics of MERS-CoV

Discussion and gaps in knowledge

Members of the MERS-CoV Research Group

Correspondence

Contributor Information

References

ACTIONS

PERMALINK

RESOURCES

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