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. 1979 Jan;76(1):56–60. doi: 10.1073/pnas.76.1.56

Subnanosecond motions of tryptophan residues in proteins

Ian Munro 1, Israel Pecht 1, Lubert Stryer 1
PMCID: PMC382875  PMID: 284374

Abstract

The dynamics of protein molecules in the subnanosecond and nanosecond time range were investigated by time-resolved fluorescence polarization spectroscopy. Synchrotron radiation from a storage ring was used as a pulsed light source to excite the single tryptophan residue in a series of proteins. The full width at half maximum of the detected light pulse was 0.65 nsec, making it feasible to measure emission anisotropy kinetics in the subnanosecond time range and thereby to resolve internal rotational motions. The proteins investigated exhibit different degrees of rotational freedom of their tryptophan residue, ranging from almost no mobility to nearly complete freedom in the subnanosecond time range. The tryptophan residue of Staphylococcus aureus nuclease B (20,000 daltons) has a single rotational correlation time (ϕ) of 9.9 nsec at 20°C, corresponding to a rotation of the whole protein molecule. By contrast, bovine basic A1 myelin protein (18,000 daltons) exhibits ϕ of 0.09 and 1.26 nsec, showing that the tryptophan residue in this protein is highly flexible. The single tryptophan of human serum albumin (69,000 daltons) has almost no rotational freedom at 8°C (ϕ = 31.4 nsec), whereas at 43°C it rotates rapidly (ϕ1 = 0.14 nsec) within a cone of semiangle 26° in addition to rotating together with the whole protein (ϕ2 = 14 nsec). Of particular interest in the large angular range (semiangle, 34°) and fast rate (ϕ1 = 0.51 nsec) of the rotational motion of the tryptophan residue in Pseudomonas aeruginosa azurin (14,000 daltons). This residue is known to be located in the hydrophobic interior of the protein. The observed amplitudes and rates of these internal motions of tryptophan residues suggest that elementary steps in functionally significant conformational changes may take place in the subnanosecond time range.

Keywords: protein dynamics, rotational relaxation, fluorescence polarization, emission anisotropy, synchrotron radiation

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Selected References

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