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. 1979 Aug;76(8):4071–4074. doi: 10.1073/pnas.76.8.4071

Crystal structure of galactan-binding mouse immunoglobulin J539 Fab at 4.5-A resolution.

M A Navia, D M Segal, E A Padlan, D R Davies, N Rao, S Rudikoff, M Potter
PMCID: PMC383979  PMID: 291062

Abstract

An electron-density map of the mouse galactan-binding immunoglobulin J539 (IgA2,kappa) Fab has been calculated to a resolution of 4.5 A by the method of heavy atom isomorphous replacement with four derivatives. The map has been interpreted with the aid of a computer program which systematically searched for the best fit between the electron-density map and the known coordinates of individual immunoglobulin domains. The quaternary structure of J539 Fab at this resolution appears similar to that of another mouse immunoglobulin, IgA2,kappa Fab, McPC603. The model coordinates for J539 Fab should allow us to proceed directly to a high-resolution structure determination without further heavy atom isomorphous replacement.

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Colman P. M., Deisenhofer J., Huber R. Structure of the human antibody molecule Kol (immunoglobulin G1): an electron density map at 5 A resolution. J Mol Biol. 1976 Jan 25;100(3):257–278. doi: 10.1016/s0022-2836(76)80062-9. [DOI] [PubMed] [Google Scholar]
  2. Jolley M. E., Rudikoff S., Potter M., Glaudemans C. P. Spectral changes on binding of oligosaccharides to murine immunoglobulin A myeloma proteins. Biochemistry. 1973 Jul 31;12(16):3039–3044. doi: 10.1021/bi00740a015. [DOI] [PubMed] [Google Scholar]
  3. Matsushima M., Marquart M., Jones T. A., Colman P. M., Bartels K., Huber R. Crystal structure of the human Fab fragment Kol and its comparison with the intact Kol molecule. J Mol Biol. 1978 Jun 5;121(4):441–459. doi: 10.1016/0022-2836(78)90393-5. [DOI] [PubMed] [Google Scholar]
  4. Padlan E. A., Segal D. M., Spande T. F., Davies D. R., Rudikoff S., Potter M. Structure at 4.5 A resolution of a phosphorylcholine-binding fab. Nat New Biol. 1973 Oct 10;245(145):165–167. doi: 10.1038/newbio245165a0. [DOI] [PubMed] [Google Scholar]
  5. Poljak R. J., Amzel L. M., Avey H. P., Chen B. L., Phizackerley R. P., Saul F. Three-dimensional structure of the Fab' fragment of a human immunoglobulin at 2,8-A resolution. Proc Natl Acad Sci U S A. 1973 Dec;70(12):3305–3310. doi: 10.1073/pnas.70.12.3305. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Rudikoff S., Potter M., Segal D. M., Padlan E. A., Davies D. R. Crystals of phosphorylcholine-binding Fab-fragments from mouse myeloma proteins: preparation and x-ray analysis. Proc Natl Acad Sci U S A. 1972 Dec;69(12):3689–3692. doi: 10.1073/pnas.69.12.3689. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Sarma R., Bott R. Crystallographic study of turkey egg-white lysozyme and its complex with a disaccharide. J Mol Biol. 1977 Jul 5;113(3):555–565. doi: 10.1016/0022-2836(77)90238-8. [DOI] [PubMed] [Google Scholar]
  8. Schmid M. F., Herriott J. R. The structure of bovine carboxypeptidase B: results at 5-5 Angstrom resolution. J Mol Biol. 1974 Mar 25;84(1):97–101. doi: 10.1016/0022-2836(74)90214-9. [DOI] [PubMed] [Google Scholar]
  9. Segal D. M., Padlan E. A., Cohen G. H., Rudikoff S., Potter M., Davies D. R. The three-dimensional structure of a phosphorylcholine-binding mouse immunoglobulin Fab and the nature of the antigen binding site. Proc Natl Acad Sci U S A. 1974 Nov;71(11):4298–4302. doi: 10.1073/pnas.71.11.4298. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Silverton E. W., Navia M. A., Davies D. R. Three-dimensional structure of an intact human immunoglobulin. Proc Natl Acad Sci U S A. 1977 Nov;74(11):5140–5144. doi: 10.1073/pnas.74.11.5140. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Ward K. B., Hendrickson W. A., Klippenstein G. L. Quaternary and tertiary structure of haemerythrin. Nature. 1975 Oct 30;257(5529):818–821. doi: 10.1038/257818a0. [DOI] [PubMed] [Google Scholar]
  12. Wishner B. C., Ward K. B., Lattman E. E., Love W. E. Crystal structure of sickle-cell deoxyhemoglobin at 5 A resolution. J Mol Biol. 1975 Oct 15;98(1):179–194. doi: 10.1016/s0022-2836(75)80108-2. [DOI] [PubMed] [Google Scholar]

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