Abstract
(+)-Hydantocidin, a recently discovered natural spironucleoside with potent herbicidal activity, is shown to be a proherbicide that, after phosphorylation at the 5' position, inhibits adenylosuccinate synthetase, an enzyme involved in de novo purine synthesis. The mode of binding of hydantocidin 5'-monophosphate to the target enzyme was analyzed by determining the crystal structure of the enzyme-inhibitor complex at 2.6-A resolution. It was found that adenylosuccinate synthetase binds the phosphorylated compound in the same fashion as it does adenosine 5'-monophosphate, the natural feedback regulator of this enzyme. This work provides the first crystal structure of a herbicide-target complex reported to date.
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Selected References
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- Bass M. B., Fromm H. J., Stayton M. M. Overproduction, purification, and characterization of adenylosuccinate synthetase from Escherichia coli. Arch Biochem Biophys. 1987 Jul;256(1):335–342. doi: 10.1016/0003-9861(87)90454-1. [DOI] [PubMed] [Google Scholar]
- Boland M. J., Schubert K. R. Biosynthesis of purines by a proplastid fraction from soybean nodules. Arch Biochem Biophys. 1983 Jan;220(1):179–187. doi: 10.1016/0003-9861(83)90398-3. [DOI] [PubMed] [Google Scholar]
- Hampton A., Harper P. J., Sasaki T. Evidence for the conformation of enzyme-bound adenosine 5'-phosphate. Substrate and inhibitor properties of 8,5' -cycloadenosine 5'-phosphate with adenylate kinase, adenylate aminohydrolase, adenylosuccinate lyase, and 5'-nucleotidase. Biochemistry. 1972 Dec 19;11(26):4965–4969. doi: 10.1021/bi00776a014. [DOI] [PubMed] [Google Scholar]
- Hatch M. D. Adenylosuccinate synthetase and adenylosuccinate lyase from plant tissues. Biochem J. 1966 Jan;98(1):198–203. doi: 10.1042/bj0980198. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Jahngen E. G., Rossomando E. F. Adenylosuccinate synthetase from Dictyostelium discoideum: effects of hadacidin analogs and binding of [14C]hadacidin. Arch Biochem Biophys. 1984 Feb 15;229(1):145–154. doi: 10.1016/0003-9861(84)90139-5. [DOI] [PubMed] [Google Scholar]
- Jones T. A., Zou J. Y., Cowan S. W., Kjeldgaard M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr A. 1991 Mar 1;47(Pt 2):110–119. doi: 10.1107/s0108767390010224. [DOI] [PubMed] [Google Scholar]
- Kang C., Fromm H. J. Identification of an essential second metal ion in the reaction mechanism of Escherichia coli adenylosuccinate synthetase. J Biol Chem. 1995 Jun 30;270(26):15539–15544. doi: 10.1074/jbc.270.26.15539. [DOI] [PubMed] [Google Scholar]
- Kang C., Sun N., Honzatko R. B., Fromm H. J. Replacement of Asp333 with Asn by site-directed mutagenesis changes the substrate specificity of Escherichia coli adenylosuccinate synthetase from guanosine 5'-triphosphate to xanthosine 5'-triphosphate. J Biol Chem. 1994 Sep 30;269(39):24046–24049. [PubMed] [Google Scholar]
- Minet M., Dufour M. E., Lacroute F. Complementation of Saccharomyces cerevisiae auxotrophic mutants by Arabidopsis thaliana cDNAs. Plant J. 1992 May;2(3):417–422. doi: 10.1111/j.1365-313x.1992.00417.x. [DOI] [PubMed] [Google Scholar]
- Mori I., Fonne-Pfister R., Matsunaga Si., Tada S., Kimura Y., Iwasaki G., Mano Ji., Hatano M., Nakano T., Koizumi Si. A Novel Class of Herbicides (Specific Inhibitors of Imidazoleglycerol Phosphate Dehydratase). Plant Physiol. 1995 Mar;107(3):719–723. doi: 10.1104/pp.107.3.719. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Nakajima M., Itoi K., Takamatsu Y., Kinoshita T., Okazaki T., Kawakubo K., Shindo M., Honma T., Tohjigamori M., Haneishi T. Hydantocidin: a new compound with herbicidal activity from Streptomyces hygroscopicus. J Antibiot (Tokyo) 1991 Mar;44(3):293–300. doi: 10.7164/antibiotics.44.293. [DOI] [PubMed] [Google Scholar]
- Pai E. F., Kabsch W., Krengel U., Holmes K. C., John J., Wittinghofer A. Structure of the guanine-nucleotide-binding domain of the Ha-ras oncogene product p21 in the triphosphate conformation. Nature. 1989 Sep 21;341(6239):209–214. doi: 10.1038/341209a0. [DOI] [PubMed] [Google Scholar]
- Poland B. W., Silva M. M., Serra M. A., Cho Y., Kim K. H., Harris E. M., Honzatko R. B. Crystal structure of adenylosuccinate synthetase from Escherichia coli. Evidence for convergent evolution of GTP-binding domains. J Biol Chem. 1993 Dec 5;268(34):25334–25342. [PubMed] [Google Scholar]
- Sander C., Schneider R. Database of homology-derived protein structures and the structural meaning of sequence alignment. Proteins. 1991;9(1):56–68. doi: 10.1002/prot.340090107. [DOI] [PubMed] [Google Scholar]
- Serra M. A., Bass M. B., Fromm H. J., Honzatko R. B. Preliminary X-ray crystallographic study of adenylosuccinate synthetase from Escherichia coli. J Mol Biol. 1988 Apr 20;200(4):753–754. doi: 10.1016/0022-2836(88)90489-5. [DOI] [PubMed] [Google Scholar]
- Siehl D. L., Subramanian M. V., Walters E. W., Lee S. F., Anderson R. J., Toschi A. G. Adenylosuccinate synthetase: site of action of hydantocidin, a microbial phytotoxin. Plant Physiol. 1996 Mar;110(3):753–758. doi: 10.1104/pp.110.3.753. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Silva M. M., Poland B. W., Hoffman C. R., Fromm H. J., Honzatko R. B. Refined crystal structures of unligated adenylosuccinate synthetase from Escherichia coli. J Mol Biol. 1995 Dec 1;254(3):431–446. doi: 10.1006/jmbi.1995.0629. [DOI] [PubMed] [Google Scholar]
- Spector T. Mammalian adenylosuccinate lyase. Participation in the conversion of 2'-dIMP and beta-D-arabinosyl-IMP to adenine nucleotides. Biochim Biophys Acta. 1977 Apr 12;481(2):741–745. doi: 10.1016/0005-2744(77)90308-4. [DOI] [PubMed] [Google Scholar]
- Stayton M. M., Rudolph F. B., Fromm H. J. Regulation, genetics, and properties of adenylosuccinate synthetase: a review. Curr Top Cell Regul. 1983;22:103–141. doi: 10.1016/b978-0-12-152822-5.50008-7. [DOI] [PubMed] [Google Scholar]
- Wolfe S. A., Smith J. M. Nucleotide sequence and analysis of the purA gene encoding adenylosuccinate synthetase of Escherichia coli K12. J Biol Chem. 1988 Dec 15;263(35):19147–19153. [PubMed] [Google Scholar]
- von Heijne G., Nishikawa K. Chloroplast transit peptides. The perfect random coil? FEBS Lett. 1991 Jan 14;278(1):1–3. doi: 10.1016/0014-5793(91)80069-f. [DOI] [PubMed] [Google Scholar]