TABLE 1.
Rate Constant | 2 mM MgCl2 | 10 mM MgCl2 | ||||||
---|---|---|---|---|---|---|---|---|
4°C | 10°C | 15°C | 25°C | 4°C | 10°C | 15°C | 25°C | |
k+ligand (μM−1•s−1) | 1.56±0.13 | 2.65±0.05 | 3.16±0.09 | 5.55±0.23 | 1.21±0.07 | 2.00±0.11 | 2.49±0.15 | 4.72±0.21 |
ak−ligand (s−1) y-intercept | 0.79±0.36 | 1.65±0.13 | 2.17±0.25 | 8.08±0.6 | 1.00±0.21 | 1.76±0.30 | 3.84±0.41 | 8.80±0.60 |
k−ligand (s−1) | 0.70±0.20 | 1.70±0.01 | 4.50±0.10 | 12.60±0.10 | 0.68±0.01 | 1.59±0.01 | 3.04±0.01 | 7.86±0.03 |
1/Kligand (μM) | 0.47±0.07 | 0.73±0.15 | 1.06±0.52 | 1.86±0.58 | 0.70±0.18 | 0.85±0.08 | 1.37±0.24 | 1.77±0.16 |
k+pocket (s−1) | 0.24±0.15 | 0.19±0.02 | 0.74±0.39 | 1.33±0.91 | 0.11±0.01 | 0.37±0.29 | 0.40±0.08 | 0.74±0.43 |
k−pocket (s−1) | 0.51±0.34 | 0.85±0.12 | 2.22±0.28 | 5.79±0.20 | 0.37±0.03 | 0.94±0.22 | 1.55±0.70 | 3.99±2.24 |
Kpocket = k+pocket/k−pocket | 0.47±0.43 | 0.23±0.04 | 0.33±0.18 | 0.23±0.16 | 0.28 ±0.03 | 0.40 ±0.32 | 0.26±0.13 | 0.19±0.15 |
bKD (μM) | 0.32±0.30 | 0.87±0.28 | 0.64±0.39 | 1.32±0.92 | 0.54±0.15 | 0.61±0.36 | 1.09±0.57 | 1.54±1.24 |
cKD (μM) | 0.70±0.26 | ND | 0.92±0.16 | 0.98±0.32 | ND | ND | ND | ND |
Rate Constant | 4 mM EDTA | |||
---|---|---|---|---|
4°C | 10°C | 15°C | 25°C | |
k+ligand (μM−1•s−1) | 2.01±0.14 | 4.15±0.27 | 4.14±0.38 | 12.06±1.61 |
k−ligand (s−1) y-intercept | 12.85±0.41 | 25.52±1.06 | 37.63±1.06 | 82.35±4.52 |
k−ligand (s−1) | 14.1±0.1 | 25.3±0.2 | 42.2±0.6 | 108.9±0.8 |
1/Kligand (μM) | 6.75±0.54 | 6.24±0.61 | 9.73±1.23 | 7.90±1.87 |
k+pocket (s−1) | ND | ND | ND | ND |
k−pocket (s−1) | ND | ND | ND | d14.77 ±2.00 |
Kpocket = kon/koff | ND | ND | ND | ND |
cKD (μM) (Fig. 3) | 4.87±0.33 | ND | 3.87±1.01 | 2.55±1.17 |
determined from the y-intercept of the linear fits in Figure 2
calculated with equation 7
determined from the hyperbolic fits in Figure 3
determined from the fit of the data in Figure 6B (extrapolated to Mg-free conditions)