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. Author manuscript; available in PMC: 2014 Jul 9.
Published in final edited form as: Biochemistry. 2013 Jun 25;52(27):10.1021/bi4004364. doi: 10.1021/bi4004364

TABLE 1.

Summary of mantdADP binding to and release from acto-MV FlAsH in the presence (2 mM or 10 mM MgCl2) and absence of Mg (4 mM EDTA).

Rate Constant 2 mM MgCl2 10 mM MgCl2
4°C 10°C 15°C 25°C 4°C 10°C 15°C 25°C
k+ligand (μM−1•s−1) 1.56±0.13 2.65±0.05 3.16±0.09 5.55±0.23 1.21±0.07 2.00±0.11 2.49±0.15 4.72±0.21
ak−ligand (s−1) y-intercept 0.79±0.36 1.65±0.13 2.17±0.25 8.08±0.6 1.00±0.21 1.76±0.30 3.84±0.41 8.80±0.60
k−ligand (s−1) 0.70±0.20 1.70±0.01 4.50±0.10 12.60±0.10 0.68±0.01 1.59±0.01 3.04±0.01 7.86±0.03
1/Kligand (μM) 0.47±0.07 0.73±0.15 1.06±0.52 1.86±0.58 0.70±0.18 0.85±0.08 1.37±0.24 1.77±0.16
k+pocket (s−1) 0.24±0.15 0.19±0.02 0.74±0.39 1.33±0.91 0.11±0.01 0.37±0.29 0.40±0.08 0.74±0.43
k−pocket (s−1) 0.51±0.34 0.85±0.12 2.22±0.28 5.79±0.20 0.37±0.03 0.94±0.22 1.55±0.70 3.99±2.24
Kpocket = k+pocket/k−pocket 0.47±0.43 0.23±0.04 0.33±0.18 0.23±0.16 0.28 ±0.03 0.40 ±0.32 0.26±0.13 0.19±0.15
bKD (μM) 0.32±0.30 0.87±0.28 0.64±0.39 1.32±0.92 0.54±0.15 0.61±0.36 1.09±0.57 1.54±1.24
cKD (μM) 0.70±0.26 ND 0.92±0.16 0.98±0.32 ND ND ND ND
Rate Constant 4 mM EDTA
4°C 10°C 15°C 25°C
k+ligand (μM−1•s−1) 2.01±0.14 4.15±0.27 4.14±0.38 12.06±1.61
k−ligand (s−1) y-intercept 12.85±0.41 25.52±1.06 37.63±1.06 82.35±4.52
k−ligand (s−1) 14.1±0.1 25.3±0.2 42.2±0.6 108.9±0.8
1/Kligand (μM) 6.75±0.54 6.24±0.61 9.73±1.23 7.90±1.87
k+pocket (s−1) ND ND ND ND
k−pocket (s−1) ND ND ND d14.77 ±2.00
Kpocket = kon/koff ND ND ND ND
cKD (μM) (Fig. 3) 4.87±0.33 ND 3.87±1.01 2.55±1.17
a

determined from the y-intercept of the linear fits in Figure 2

b

calculated with equation 7

c

determined from the hyperbolic fits in Figure 3

d

determined from the fit of the data in Figure 6B (extrapolated to Mg-free conditions)