Background: The serine-rich repeat glycoproteins Srr1 and Srr2 are surface adhesins of Streptococcus agalactiae important for pathogenicity.
Results: Both Srrs bind tandem repeats of the fibrinogen Aα chain, but Srr2 has greater affinity explained by structure-function analysis of the Srrs.
Conclusion: A dock, lock, and latch mechanism describes the Srr-fibrinogen interaction.
Significance: The higher affinity of Srr2 may contribute to the hypervirulence of Srr2-expressing strains.
Keywords: Bacterial Adhesion, Bacterial Pathogenesis, Fibrinogen, Protein Crystallization, Streptococcus, Streptococcus agalactiae, Prot
Abstract
The serine-rich repeat glycoproteins of Gram-positive bacteria comprise a large family of cell wall proteins. Streptococcus agalactiae (group B streptococcus, GBS) expresses either Srr1 or Srr2 on its surface, depending on the strain. Srr1 has recently been shown to bind fibrinogen, and this interaction contributes to the pathogenesis of GBS meningitis. Although strains expressing Srr2 appear to be hypervirulent, no ligand for this adhesin has been described. We now demonstrate that Srr2 also binds human fibrinogen and that this interaction promotes GBS attachment to endothelial cells. Recombinant Srr1 and Srr2 bound fibrinogen in vitro, with affinities of KD = 2.1 × 10−5 and 3.7 × 10−6 m, respectively, as measured by surface plasmon resonance spectroscopy. The binding site for Srr1 and Srr2 was localized to tandem repeats 6–8 of the fibrinogen Aα chain. The structures of both the Srr1 and Srr2 binding regions were determined and, in combination with mutagenesis studies, suggest that both Srr1 and Srr2 interact with a segment of these repeats via a “dock, lock, and latch” mechanism. Moreover, properties of the latch region may account for the increased affinity between Srr2 and fibrinogen. Together, these studies identify how greater affinity of Srr2 for fibrinogen may contribute to the increased virulence associated with Srr2-expressing strains.
Introduction
The serine-rich repeat (SRR)2 glycoproteins of Gram-positive bacteria are a family of adhesins that are important virulence factors for their respective pathogens (1–3). These bacterial surface components are encoded within large loci that also encode proteins mediating their glycosylation and export. Each SRR protein consists of a long and specialized signal sequence, a short serine-rich region (SRR1), a ligand binding region, a second lengthy SRR region, and a typical LPXTG cell wall anchoring motif at the C terminus (4, 5). Although relatively few of the SRR proteins have been studied in detail, the binding regions of the SRR glycoproteins appear to vary significantly in predicted structure and binding properties. Among the best characterized SRR proteins is GspB of Streptococcus gordonii, which binds human platelets through its interaction with sialyl-T antigen on the platelet receptor GPIb (6, 7). This interaction appears to be an important event in the pathogenesis of endocarditis, because disruption of GspB binding is associated with a marked reduction in virulence, as tested by animal models of endocardial infection (7, 8). A number of other SRR proteins have been shown to contribute to virulence, including SraP of Staphylococcus aureus, PsrP of Streptococcus pneumoniae, and UafB of Staphylococcus saprophyticus (9–11), although the molecular basis for binding by these other adhesins is somewhat less well defined.
Streptococcus agalactiae (group B Streptococcus, GBS) is a leading cause of neonatal sepsis, pneumonia, and meningitis (12, 13). In recent decades, this organism has also become a significant cause of invasive infections among adults (14). GBS strains express either one of two SRR proteins, Srr1 or Srr2. Expression of Srr1 by GBS has been shown to contribute to colonization and virulence in models of infection (15–17). Srr1 mediates bacterial binding to cytokeratin 4, which is likely to be important for colonization of the female genital tract and is a risk factor for subsequent invasive disease (17, 18). In addition, we have recently shown that Srr1 binds to human fibrinogen via its interaction with the Aα chain of the protein. Srr1-mediated binding to fibrinogen is important for the attachment of GBS to human brain microvascular endothelial cells (hBMEC), where fibrinogen served as a bridging molecule between Srr1 and the endovascular surface (4).
Sequence comparisons and deletion mutagenesis studies (4) suggest that the interaction between Srr1 and fibrinogen could employ the “dock, lock, and latch” (DLL) mechanism described for several other fibrinogen-binding adhesins, such as ClfB of S. aureus and SdrG of Staphylococcus epidermidis (19–21). During this binding process, fibrinogen engages a cleft between two IgG-like folds (the N2 and N3 domains) of the binding region. This docking event results in a conformational change of the adhesin, such that the flexible C terminus of the N3 domain (the “latch”) forms a β-strand and completes a β-sheet within the N2 domain, thereby “locking” the ligand in place. Deletion of the latch region of Srr1 is associated with reduced GBS binding in vitro to fibrinogen and hBMEC and resulted in attenuated virulence in a mouse model of bacteremia and meningitis (4). These findings indicate that fibrinogen binding via Srr1 may occur via a DLL mechanism and that this interaction enhances pathogenicity.
As compared with Srr1, relatively little is known about the binding properties of Srr2 or its contribution toward GBS virulence. Srr2 has been detected in serotype III strains exclusively and only in isolates belonging to sequence multilocus sequence type 17 (ST-17), a genotype linked epidemiologically to increased invasive disease (16, 22–28). In addition, strains expressing Srr2 were significantly more virulent in a mouse model of neonatal sepsis, as compared with Srr1-expressing strains (16), suggesting that this surface component may at least in part explain the increased virulence associated with ST-17 isolates. ST-17 strains also have higher levels of fibrinogen binding, but the molecular basis for this has not been well defined (28). Delineating the molecular differences between Srr1 and Srr2 could improve our understanding of how Srr2 confers hypervirulence in S. agalactiae. We now report that both Srr1 and Srr2 bind to a specific tandem repeat region of fibrinogen Aα chain. Crystal structures and mutagenesis studies indicate that both proteins employ a DLL mechanism for host binding. Moreover, Srr2 has significantly higher binding affinity for fibrinogen as compared with Srr1, and analysis of their structures suggests that the physical positioning of the latch region may underlie this enhanced affinity.
EXPERIMENTAL PROCEDURES
Reagents
Purified human fibrinogen was obtained from Hematologic Technologies. Rabbit anti-fibrinogen IgG was purchased from Aniara. Rabbit anti-Srr2 IgG was generated by NeoPeptide, using purified recombinant protein corresponding to the binding region (BR) of Srr2.
Strains and Growth Conditions
The bacteria and plasmids used in this study are listed in Tables 1 and 2. S. agalactiae strains were grown in Todd-Hewitt broth (Difco) supplemented with 0.5% yeast extract (THY). All mutant strains grew comparably well in vitro, as compared with parent strains (data not shown). Escherichia coli strains DH5α, BL21, and BL21(DE3) were grown at 37 °C under aeration in Luria broth (LB; Difco). Antibiotics were added to the media as required.
TABLE 1.
Strain or plasmid | Genotype or descriptiona | Source |
---|---|---|
E. coli | ||
DH5α | F−r−m+Ø80dlacZΔM15 | Invitrogen |
BL21 (DE3) | Expression host, inducible T7 RNA polymerase | Novagen |
S. agalactiae | ||
COH31 | Serotype III | 67 |
PS954 | COH31Δsrr1, CmR | 15 |
NCTC 10/84 | Serotype V, clinical isolate | 68 |
PS2645 | NCTC 10/84Δsrr1, CmR | 15 |
COH1 | Serotype III, clinical isolate, ST-17 | 69 |
PS2641 | COH1Δsrr2, CmR | 17, 49 |
PS2931 | PS2641/pDE-Srr1 | This study |
PS2933 | PS2641/pDE-Srr2 | This study |
H36B | Serotype Ib | 70 |
NCTC 1/82 | Serotype IV | 4 |
J48 | Serotype III, ST-17 | 16 |
NEM316 | Serotype III, ST-23 | 71 |
a ErmR, erythromycin resistance; CmR, chloramphenicol resistance.
TABLE 2.
Plasmid | Description | Source |
---|---|---|
pDE123 | Streptococcal shuttle vector, ErmR | 4 |
pDE123-srr1 | Vector for expression of Srr1, ErmR | 4 |
pDE123-srr2 | Vector for expression of Srr2, ErmR | This study |
pET22b(+) | Expression vector, AmpR | Novagen |
pET28-FLAG | Expression vector with FLAG tag, KanR | 32 |
pET22-Srr1-BR | Vector for expression of Srr1-BR, AmpR | 4 |
pET22-Srr2-BR | Vector for expression of Srr2-BR, AmpR | This study |
pET22-ClfA-BR | Vector for expression of ClfA-BR, AmpR | This study |
pET28-FLAG-Srr2-BRΔlatch | Vector for expression of FLAG-tagged Srr1 (303–627) | This study |
pSET-5S | Streptococcal thermosensitive suicide vector, CmR | 72 |
pSET-5S-srr2KO | Vector for deletion of srr2 gene, CmR | This study |
pMAL-C2X | Expression vector with MBP fusion protein | New England Biolabs |
pMal-Aα | Vector for expression of MBP-tagged Aα chain | 33 |
pMal-Bβ | Vector for expression of MBP-tagged Bβ chain | 33 |
pMal-γ | Vector for expression of MBP-tagged γ chain | 33 |
pMal-Aα(1–197) | Vector for expression of MBP-tagged Aα variant | 4 |
pMal-Aα(198–610) | Vector for expression of MBP-tagged Aα variant | 4 |
pMal-Aα(198–282) | Vector for expression of MBP-tagged Aα variant | 4 |
pMal-Aα(283–410) | Vector for expression of MBP-tagged Aα variant | 4 |
pMal-Aα(198–282 + 411–610) | Vector for expression of MBP-tagged Aα variant | 4 |
pMal-Aα-RU1–10 | Vector for expression of MBP-tagged Aα variant | This study |
pMal-Aα-RU1–6 | Vector for expression of MBP-tagged Aα variant | This study |
pMal-Aα-RU1–7 | Vector for expression of MBP-tagged Aα variant | This study |
pMal-Aα-RU1–8 | Vector for expression of MBP-tagged Aα variant | This study |
pMal-Aα-RU1–9 | Vector for expression of MBP-tagged Aα variant | This study |
Cloning and Expression of Srr1-BR and Srr2-BR
Genomic DNA was isolated from GBS NCTC 10/84 and COH1 using Wizard Genomic DNA purification kits (Promega), according to the manufacturer's instructions. PCR products were cloned into pET28-FLAG to express FLAG-tagged versions of Srr1-BR (amino acids 303–641), Srr2-BR (amino acids 303–641), or the latch deletion variant of Srr2-BR (amino acids 303–628). DNA encoding Srr1-BR, Srr2-BR, Srr1-BRΔlatch, Srr2-BRΔlatch, or ClfA-BR (N2N3) were cloned into pET22b(+) (Novagen) or pET28-FLAG. Proteins were purified by either nickel-nitrilotriacetic acid (Promega) or anti-FLAG M2-agarose affinity chromatography (Sigma), according to the manufacturers' instructions.
Cloning and Expression of Fibrinogen Chains
DNA of each chain was amplified from cDNA encoding the Aα-, Bβ-, and γ-chains of human fibrinogen and cloned into pMAL-C2X (New England Laboratory) as described previously (29–31). The recombinant proteins were purified by affinity chromatography with amylose resin, according to the manufacturer's instructions (New England Biolabs).
Site-directed Mutagenesis
Cysteine replacement mutations were made within latch and latching cleft domains of Srr-BRs by a two-stage PCR procedure. For codon conversion to cysteine in the latching cleft, overlapping primers were used with either primer 3006(NotI)/5003 (N423C) or 3003(N423C)/5006(XhoI) for Srr1-BR and either 3012(NotI)/5009 (N336C) or 3009(N339C)/5012(XhoI) for Srr2-BR to generate overlapping DNA fragments spanning the entire Srr1-BR and Srr2-BR. The two DNA fragments were combined for the second stage PCR and then amplified using primers 3006(NotI)/5006(XhoI, K639C) for the Srr1-BR and 3012(NotI)/5012(XhoI, N541C) for Srr2-BR. Amplified products were digested with the appropriate restriction enzymes and ligated into pET28-FLAG. The constructs were sequenced to confirm that the mutations were correctly positioned and then expressed in E. coli, as described above.
Construction of Plasmids for Gene Complementation
Genomic DNA was isolated from COH1 and NCTC 10/84 strains, using Wizard Genomic DNA purification kits (Promega). Polymerase chain reaction (PCR) was performed with the primers (Srr1 forward, AAT CTA GAT AGA TTT CTA ATC ACT TAA TTT TAC, and Srr1 reverse, GCT CTA GAA GAA TTC AAA GTA GGT TTA GTC; Srr2 forward, TTT CTA GAT AGC ATT ATT TTT TAA ATA TGG, and Srr2 reverse, TTC TGC AGT TAA TCT TTT TTC TTC TTG C) to amplify srr1 or srr2 genes. PCR products were purified, digested, and ligated into pDE123 to express the full-length Srr1 and Srr2.
Analysis of Srr2-BR Binding to Fibrinogen by Far Western Blotting
Purified human fibrinogen (0.1 μg) and recombinant fibrinogen truncations (0.5 μg) were separated by electrophoresis in 3–8% NuPAGE Tris acetate gels (Invitrogen) and transferred onto nitrocellulose membranes. The membranes were treated with a casein-based blocking solution (Western Blocking Reagent, Roche Applied Science) for 1 h at room temperature and then incubated for 1 h with FLAG-tagged Srr2-BR(5 μg/ml) suspended in PBS, 0.05% Tween 20 (PBS-T). The membranes were then washed three times for 15 min in PBS-T, and bound proteins were detected with mouse anti-FLAG antibody (Sigma).
Analysis of Srr2-BRs Binding to Fibrinogen by Enzyme-linked Immunosorbent Assay (ELISA)
Purified fibrinogen (0.1 μm) or recombinant fibrinogen truncations were immobilized overnight in 96-well microtiter plates at 4 °C. The wells were blocked with 300 μl of casein blocking solution (Roche Applied Science) for 1 h at room temperature (32, 33). The plates were washed three times with PBS-T and either FLAG-Srr2-BR or FLAG-Srr2-BRΔlatch in PBS-T was added over a range of concentrations for 1 h. The plates were incubated for 1 h at 37 °C, washed with PBS-T to remove unbound protein, and incubated with mouse anti-FLAG antibodies (1:4000) in PBS-T for 1 h at 37 °C. Wells were washed and incubated with HRP-conjugated rabbit anti-mouse IgG (Sigma) diluted 1:5000 in PBS-T for 1 h at 37 °C. For some studies, wells containing immobilized fibrinogen were pretreated with rabbit anti-fibrinogen IgG or recombinant untagged proteins, followed by washing prior to the addition of FLAG-Srr2-BR. Levels of binding were assessed by absorbance at 450 or 495 nm, using 3,3′,5,5′-tetramethylbenzidine or o-phenylenediamine dihydrochloride as chromogenic substrates.
Lectin Blot Analysis of Srr2 Expression by GBS
Cell wall proteins were released from whole bacteria using mutanolysin, as described previously (4). The proteins were separated by SDS-PAGE in 3–8% Tris acetate gels (Invitrogen) under reducing conditions (0.5 m dithiothreitol) and transferred to nitrocellulose membranes. After incubating for 1 h at room temperature with the casein blocking reagent (Roche Applied Science), the membranes were incubated with biotin-conjugated wheat germ agglutinin (Vector Laboratories) (0.2 μg/ml) followed by incubation with HRP-conjugated streptavidin (0.2 μg/ml) (4).
GBS Adherence Assay
Primary hBMEC were purchased from ScienCell (34). Bacterial adherence assays were performed as described (15). In brief, bacteria were grown to mid-log phase and adjusted to the concentration of 105 CFU/ml in PBS. Bacterial suspensions were added to confluent hBMEC monolayers and incubated for 30 min. The wells were washed to remove unbound bacteria and treated with 100 μl of trypsin (2.5 mg/ml) for 10 min at 37 °C to release attached bacteria. The number of bound bacteria was determined by plating serial dilutions of the recovered bacterial suspensions onto THY agar. After 24 h, the number of bacteria were counted, and bacterial adherence was calculated as recovered CFU/initial inoculum CFU × 100%. In the indicated experiments, exogenous fibrinogen (20 μg/ml) was added directly to bacteria and incubated for 30 min with rotation at 37 °C prior to addition to hBMEC monolayers.
Binding of GBS to Immobilized Fibrinogen and Recombinant Proteins
Overnight cultures of GBS were harvested by centrifugation and suspended in PBS (final concentration, 106 CFU/ml). Purified fibrinogen (0.1 μm) or recombinant truncated fibrinogen polypeptides were immobilized in 96-well microtiter plates and then incubated with 100 μl of GBS suspension for 30 min at 37 °C. Unbound bacteria were removed from the plates by washing with PBS, and the number of bound bacteria was determined by treating the wells with trypsin and plating serial dilutions of the recovered bacteria onto THY agar plates as described above or staining with crystal violet (0.5% v/v) for 1 min, as described previously (32).
Surface Plasmon Resonance (SPR) Spectroscopy
SPR spectroscopy was performed using a BIAcore T100 system (GE Healthcare). Purified human fibrinogen (10 μg/ml in sodium citrate buffer, pH 5.5) was covalently immobilized on CM5 sensor chips using amine coupling as described previously (35, 36). Increasing 2-fold concentrations (range, 1.25–160 μm) of Srr1-BR and Srr2-BR were flowed over fibrinogen or block reagent (ethanolamine) at a rate of 10 μl/min. The sensorgram data were subtracted from the corresponding data from the reference flow cell and analyzed using the BIAevaluation software version 3.0. A plot of the level of binding (response units) at equilibrium against a concentration of analyte was used to determine the KD.
Isothermal Titration Calorimetry (ITC)
ITC was performed with a MicroCal ITC200 microcalorimeter at 25 °C as described previously for ClfA (a fibrinogen-binding protein of S. aureus) (35). All recombinant proteins were dialyzed against HBS buffer (10 mm HEPES, 150 mm NaCl, pH 7.4). The reaction cell contained 50 μm fibrinogen Aα RU678 or RU789 (expressed as MBP fusion proteins), and the syringe contained 0.5 mm recombinant Srr1-BR or Srr2-BR in HBS buffer. These concentrations were based on the above-published studies with ClfA. The data were analyzed using MicroCal Origin software (version 5.0), with results fitted to a single binding mode (35, 36).
Crystallization of Srr Binding Regions
Purified recombinant Srr1-BR (7.6 mg/ml in 0.5 m NaCl, 0.01 m Tris-HCl, pH 8.3, 5 mm β-mercaptoethanol) was crystallized using the sitting drop vapor diffusion method with 1 μl of protein incubated with 0.2 mm peptide (NPGSPRPGSTGTWNPGSSERGSAGHWTSESSVSGSTGQWHSESGSFRPDSPG) and 1 μl of reservoir solution (0.2 m CaCl2, 0.1 m Tris-HCl, pH 6.0, 20% (w/v) PEG 6000) at room temperature. Srr2-BR was crystallized using the sitting drop vapor diffusion method with 1 μl of protein (7.5 mg/ml, 0.25 m NaCl, 0.01 m Tris-HCl, pH 8.3, 5 mm β-mercaptoethanol) and 1 μl of reservoir solution (5 m NaCl) at room temperature.
Crystals of S. agalactiae Srr1-BR were cryo-cooled from the reservoir solution without additional cryoprotectant. Data were collected at 100 K using beamline 21-ID-D of the Life Sciences Collaborative Access Team (LS-CAT) at the Advanced Photon Source (Argonne, IL) using a wavelength of 0.97928 Å and a MarMosaic 300 CCD detector. Crystals of S. agalactiae Srr2-BR were removed from the crystallization droplet and cryo-protected in 4 m NaHCOO prior to cryo-cooling. Data were collected at 100 K on beamline 21-ID-G of the LS-CAT using a wavelength of 0.97956 Å and a MarMosiac 300 CCD detector. All data were processed using the HKL3000 suite (37). The structure of Srr1-BR was determined by molecular replacement using PHASER (38) and the structure of S. epidermidis adhesin SdrG (Protein Data Bank code 1R17) as a search model (39). The structure of Srr2-BR was determined by molecular replacement with the program PHASER (38, 40) using the refined coordinates of Srr1 as the search model. Both models were improved using iterative rounds of model building in COOT and refinement in REFMAC (41, 42). Details of data collection, structure determination, refinement, and model quality are provided in Table 3.
TABLE 3.
S. agalactiae Srr1-BR | S. agalactiae Srr2-BR | |
---|---|---|
PDB entry | 4MBO | 4MBR |
Data collection | ||
Resolution | 30 to 1.65 Å (1.68 to 1.65 Å)a | 30 to 3.65Å (3.71 to 3.65 Å) |
Beamline | 21-ID-D | 21-ID-G |
Wavelength | 0.97928 Å | 0.97956 Å |
Space group | P21212 | P41212 |
Unit cell parameters | a = 73.36Å | a = b = 97.60 Å |
b = 83.24 Å | ||
c = 57.06 Å | c = 173.27 Å | |
α = β = γ = 90° | α = β = γ = 90° | |
No. of reflections | 255,636 | 93,050 |
Unique reflections | 42,747 | 9,911 |
Completeness | 99.5% (100.0%) | 99.9% (100.0%) |
I/σ | 26.4 (3.8) | 41.0 (3.3) |
Rsymb | 0.058 (0.500) | 0.050 (0.690) |
Refinement | ||
Rworkc | 0.154 | 0.213 |
Rfreec | 0.187 | 0.241 |
No. of Rfree reflections | 2141 | 471 |
a Values in parentheses are for the highest resolution shell.
b Rsym = Σ(Ii − 〈I〉)/Σ (〈I〉), where i is the ith measurement and 〈I〉 is the weighted mean of I.
c Rwork = Σ ‖Fobs| − |Fcalc‖/S|Fobs|.
d Rfree is calculated using the same equation as Rwork using a subset of reflections omitted from refinement and reserved in the test set of the data.
Data Analysis
Binding data are expressed as means ± S.D. and were compared for statistical significance by the unpaired t test.
RESULTS
Srr2 Mediates GBS Binding to Fibrinogen
We have previously shown that the Srr1 glycoprotein of GBS can bind fibrinogen in vitro and that this interaction mediates bacterial binding to the host in vivo (4). To assess whether Srr2 has a similar role, we first measured the adherence of two GBS strains expressing Srr2 to immobilized fibrinogen. Strain NCTC 10/84, which expresses Srr1, served as a control for fibrinogen binding. As shown in Fig. 1A, strains COH1 adhered to immobilized human fibrinogen at levels that were significantly higher than those seen with a negative control (casein). Similar results were seen with strain J48 (data not shown). Binding of the strains was significantly inhibited by pretreatment of immobilized fibrinogen with anti-fibrinogen IgG, indicating that the interaction between GBS and fibrinogen was specific (Fig. 1B).
To more directly assess the impact of Srr2 on bacterial binding, we compared the binding of COH1 and an Srr2-deficient strain (COH1Δsrr2) to immobilized fibrinogen. As shown in Fig. 1C, loss of srr2 expression significantly reduced GBS binding to fibrinogen but had no effect on bacterial binding to immobilized fibronectin. Expression of the srr2 gene in trans restored binding to wild type (COH1) levels, demonstrating that the loss of binding observed with srr2 disruption was not due to polar or pleiotropic effects (Fig. 9B). In addition, binding by COH1 to fibrinogen was inhibited by rabbit anti-Srr2 IgG but not by normal (preimmune) rabbit IgG (Fig. 1D). The level of inhibition was concentration-dependent, with 100 μg/ml of anti-Srr2 IgG being sufficient to reduce WT GBS binding to levels comparable with those seen with GBSΔsrr2. These results indicate that the binding of GBS COH1 to immobilized fibrinogen is predominantly mediated by Srr2.
To confirm that the putative binding region of Srr2 interacts with fibrinogen, we assessed the interaction of the purified FLAG-tagged binding region (FLAG-Srr2-BR) with immobilized human fibrinogen (Fig. 2). In control studies, no significant binding by FLAG-Srr2-BR to immobilized casein was detected. In contrast, FLAG-Srr2-BR showed significant levels of binding to fibrinogen, which increased in direct proportion to the amount of protein applied. At concentrations above 3.3 μm of FLAG-Srr2-BR, binding reached a plateau, consistent with saturation. Binding of Srr2-BR was significantly inhibited by anti-fibrinogen IgG, indicating that this interaction was specific (Fig. 2C).
Structures of S. agalactiae Srr1 and Srr2 Binding Regions
To assess whether Srr1 and Srr2 could support a DLL mechanism of ligand binding, we determined the crystal structures of S. agalactiae Srr1-BR and Srr2-BR at resolutions of 1.65 and 3.65 Å, respectively (Fig. 3). As was previously predicted from sequence and functional analyses (4), Srr1-BR and Srr2-BR each adopt an overall fold that resembles the binding regions of “microbial surface components recognizing adhesive matrix molecules” (MSCRAMMs), including the well characterized ClfA (43, 44), ClfB (20), SdrG (21), and the likely MSCRAMM UafA (45). However, Srr1-BR and Srr2-BR are more similar to each other than they are to these structurally characterized MSCRAMMs, with a root mean square deviation of 1.6 Å between Srr1-BR and Srr2-BR and root mean square deviations between 2.1 and 2.5 Å when either Srr1 or Srr2 is placed in a pairwise structural alignment with ClfA, ClfB, SdrG, or UafA (20, 21, 43–45).
Like other MSCRAMMs, Srr1-BR and Srr2-BR contain two domains, termed N2 and N3, with each adopting the DE variation of the Ig fold (44). Between the N2 and N3 domains is a cleft, demonstrated to be the ligand-binding site in other MSCRAMMs. The size and shape of the interdomain cleft is consistent with this being the binding site. An unusual feature of the Srr2-BR structure, not observed in Srr1-BR or in any previous structures of MSCRAMMs, is the conformation of the C terminus of the N3 domain. To date, the structures of MSCRAMMs crystallized in the absence of a ligand have the C-terminal extension of the N3 domain either completely or partially disordered (21, 44, 45). This C-terminal extension, known as the latch, has been shown to close over the peptide mimetic of a host ligand in co-crystal structures. Once closed, the latch forms a β-strand that completes a fully hydrogen-bonded β-sheet within the N2 domain and locks the host ligand in place (21, 43) (Fig. 3, C and D). In contrast to other structurally characterized DLL proteins, the latch region in S. agalactiae Srr2-BR adopted a distinct conformation in the absence of ligand. Although the assignment of amino acids is somewhat tenuous at this resolution, electron density is consistent with the latch being nearly closed or “ajar.”
Srr2-BR Binding to Fibrinogen Occurs through a Variant DLL Mechanism
To reveal whether the latch domain of Srr2-BR was important for binding, we generated a variant of the protein (Srr2-BRΔlatch), in which the terminal 13 residues of this domain were deleted. We have previously shown that this type of deletion in Srr1-BR abrogates binding, without altering the overall conformation of the protein (4). As shown in Fig. 2B, removing the C-terminal amino acids of the Srr2 binding region abolished fibrinogen binding. In addition, untagged Srr2-BR inhibited the binding of FLAG-Srr2-BR to immobilized fibrinogen, whereas untagged Srr2-BRΔlatch failed to block this interaction (Fig. 4B). These data indicate that the fibrinogen binding domain of Srr2 is indeed located in the predicted binding region and that Srr2-BR binds fibrinogen by a DLL mechanism.
Based on the above findings, we hypothesized that the affinity of Srr-BRs to fibrinogen is affected by the location of the latch prior to ligand binding, with a more closed conformation of the latch associated with enhanced affinity. To address this possibility, we constructed variants of the Srr1 and Srr2 BRs, in which residues in both the latch and latching cleft regions were replaced with a cysteine, such that a disulfide bond would be formed, thus fixing the spatial position of the latch. We used the crystal structures to guide the location of the cysteine insertions, to generate BRs with the latch adopting a closed conformation, even in the absence of ligand. When assessed by SDS-PAGE under nonreducing conditions, the mutated Srr1 and Srr2 BRs migrated faster than their respective WT proteins, presumably due to the more compact folding of the cross-linked proteins (Fig. 5). Under reducing conditions (1 mm DTT), the mutant proteins had mobilities identical to their WT counterparts As compared with the WT Srr1-BR and the Srr2 BR, both cross-linked proteins showed enhanced binding to fibrinogen (Fig. 5). These data indicate that the affinities of Srr1 and Srr2 for fibrinogen are enhanced by a pre-closed latch, consistent with the location of the latch influencing binding affinity.
Identification of the Fibrinogen Region Bound by Srr2-BR
Fibrinogen is a 340-kDa hexameric glycoprotein composed of three pairs of chains (α, β, and γ) linked by disulfide bonds (Fig. 4A). To identify the binding site on fibrinogen for Srr2, we first examined whether binding of FLAG-Srr2-BR to immobilized fibrinogen could be inhibited by untagged Srr1-BR (which binds the tandem repeat region of the fibrinogen Aα chain) or untagged ClfA-BR (which binds the N terminus of the fibrinogen Bβ chain) (4, 46). As shown in Fig. 4B, binding of FLAG-Srr2-BR was significantly reduced by pretreatment of immobilized fibrinogen with either untagged Srr1-BR or Srr2-BR. In contrast, no inhibition was seen with ClfA-BR. To further characterize the binding site for Srr2 on fibrinogen, we analyzed by far Western blotting the interaction of FLAG-Srr2-BR with human fibrinogen and recombinant fibrinogen Aα, Bβ, and γ chains. As was found for Srr1 (4), Srr2 binding was only detected to the Aα chain (Fig. 4, C and D). To better define the binding site on this chain for the SRR proteins, we then measured their binding to recombinant Aα chain fragments. When assessed by ELISA, we found no significant binding of either FLAG-Srr1-BR or FLAG-Srr2-BR to MBP:Aα(198–282) or MBP:Aα(198–282 + 411–610). In contrast, both SRR proteins exhibited levels of binding to MBP:Aα(283–410) that were comparable with those seen with the recombinant full-length Aα chain (MBP:Aα(1–610); Fig. 4E). Far Western blotting analysis confirmed that the Srr1-BR- and Srr2-BR-binding sites are indeed contained within the tandem repeat region (amino acids 283–410) of the Aα chain of fibrinogen (Fig. 4F).
We then sought to characterize further which subdomain within the tandem repeat region is the receptor for the SRR proteins. This region of the fibrinogen Aα chain is composed of 10 repeating units, each containing 13 amino acids (Fig. 6). We therefore expressed various portions of this region as maltose-binding protein fusions and assessed SRR protein binding to these peptides by far Western blotting (Fig. 6A). Peptides composed of repeat units 1–8 (RU1–8) and 1–9 (RU1–9) were bound by both Srr1-BR and Srr2-BR. In addition, tandem repeat units 5–9 (RU5–9) and 6–9 (RU6–9) were bound by both binding regions, indicating that the binding site of the Srr proteins is located within tandem repeats 6–8 of the fibrinogen Aα chain. To directly confirm these findings, we assessed Srr1-BR or Srr2-BR binding to peptides composed of tandem repeat units 1–10 (RU1–10), 6–8 (RU678), and 7–9 (RU789), as measured by ELISA (Fig. 6B). Binding levels of Srr1-BR and Srr2-BR to RU678 were comparable with those seen with the full-length tandem repeat region (RU1–10). In contrast, no binding was detected with immobilized RU789, suggesting that the RU678 comprises the minimum target for Srr1-BR and Srr2-BR binding to the fibrinogen Aα chain.
To examine whether the binding of GBS NCTC 10/84 and COH1 to fibrinogen was mediated by the interaction of Srr1-BR and Srr2-BR with RU678, the above WT strains and their respective Δsrr1 or Δsrr2 isogenic mutants were incubated with immobilized fibrinogen, RU1–10 (amino acids 283–410), RU678, or RU789 (Fig. 7). The WT GBS strains exhibited levels of binding to RU678 that were comparable with those seen with fibrinogen, but both strains had only minimal levels of binding to immobilized RU789. In contrast, the GBSΔsrr1 and Δsrr2 mutant strains exhibited low levels of binding to all immobilized proteins. To further investigate whether GBS binding to fibrinogen was mediated by the interaction of Srr1-BR or Srr2-BR with RU678, we tested the ability of the RU678 peptide to inhibit GBS binding to immobilized fibrinogen. Preincubation of GBS strains with 10 μm RU678 resulted in a significant reduction in binding (Fig. 7B), further indicating that bacterial binding to fibrinogen is mediated by the interaction of the Srr proteins with repeating units 6–8 of the fibrinogen Aα chain.
Quantitative Assessment of SRR Protein Binding to Fibrinogen by SPR and ITC
We assessed the relative binding of Srr1-BR and Srr2-BR to immobilized fibrinogen (0.1 μm) or MBP-RU678 (0.1 μm), by ELISA as described previously (4). As shown in Fig. 8, A and B, both proteins bound to immobilized fibrinogen and MBP-RU678 in a concentration-dependent manner. Next, the binding of Srr1-BR and Srr2-BR to fibrinogen was analyzed via SPR (Fig. 8C). Increasing concentrations of Srr1-BR or Srr2-BR (1.25–160 μm) were flowed over fibrinogen immobilized on a CM5 chip, and the dissociation constant (KD) of binding was determined from analysis of the equilibrium binding data. Srr1-BR and Srr2-BR showed specific and concentration-dependent binding to human fibrinogen. The KD values of Srr1-BR and Srr2-BR were determined to be 2.1 × 10−5 and 3.7 × 10−6 m, respectively. These values are within the range reported for fibrinogen-binding proteins of Gram-positive bacteria (43, 47). However, the above KD value for Srr1-BR was considerably larger than the 7.51 × 10−8 we had previously calculated, based on ELISA data (4). A similar variation in KD values has been reported for ClfA binding to fibrinogen (43), although the reason for this variability is unclear.
We next sought to confirm these results by ITC. Because of the limited solubility of fibrinogen, we were unable to assess its binding to the Srr binding regions by this method. For that reason, we assessed the binding of Srr1-BR and Srr2-BR to RU678 (Fig. 8D). In control studies, no significant interaction of Srr1-BR or Srr2-BR with RU789 was detected (data not shown). However, Srr1-BR and Srr2-BR bound RU678 with dissociation constants (KD) of 6.9 × 10−5 and 1.2 × 10−5 m, respectively. Both binding reactions were exothermic, and the stoichiometry (n) of the binding reaction with both proteins was close to 1.
GBS Strains Expressing Srr2 Have Higher Levels of Fibrinogen and Endothelial Cell Binding
Because Srr2-BR exhibited higher binding affinity to fibrinogen than Srr1-BR, we next compared fibrinogen binding by Srr1-expressing strains with strains expressing Srr2. As shown in Fig. 9, the Srr2 strains (COH1 and J48) had significantly higher levels of fibrinogen binding, as compared with five strains expressing Srr1. We then examined the impact of expressing either Srr1 or Srr2 in strain COH1Δsrr2 (Fig. 9B). Of note, expression levels of the SRR glycoproteins on the cell surface of the complemented strains were comparable, as measured by binding to wheat germ agglutinin, although somewhat lower than those seen with the WT strain (data not shown). Complementation with the srr1 gene in trans significantly increased fibrinogen binding by COH1 Δsrr2, but not to levels observed with the WT strain. However, complementation of the same mutant with srr2 gene in trans restored binding of COH1 Δsrr2 to WT levels. These results indicate that the higher affinity of Srr2 for fibrinogen, as compared with Srr1, can result in higher levels of bacterial binding to the protein.
The attachment of GBS to hBMEC is thought to be important for the invasion of the organism into the central nervous system (48, 49). Our previous study indicates that Srr1-fibrinogen binding is important for the attachment of GBS to hBMEC. To determine whether Srr2 has a similar role, we assessed the impact of Srr2 on GBS attachment to hBMEC pretreated with purified fibrinogen. WT GBS and isogenic Δsrr1 and Δsrr2 variants were incubated with hBMEC. After 30 min, WT GBS efficiently adhered to these cells, whereas the Δsrr1 and Δsrr2 mutants were significantly reduced in binding (p < 0.01) (Fig. 10). Preincubation of bacteria with purified human fibrinogen (20 μg/ml) enhanced the binding of the WT strains to hBMEC but had no effect on the binding of the Δsrr1 and Δsrr2 mutant strains. Of note, strain COH1, which expresses Srr2, had higher levels of binding to hBMEC, as compared with the Srr1-expressing strain (NCTC 10/84), which was further increased by the addition of fibrinogen.
DISCUSSION
S. agalactiae is a leading cause of neonatal bacteremia and meningitis. Infection is initiated by colonization of the lower genital tract of pregnant women, followed by bacterial invasion and neonatal involvement. Srr1 has been shown to enhance the attachment of bacteria to vaginal and cervical epithelial cells in vitro and to augment genital colonization in mice (17). In addition, expression of the protein is associated with increased pathogenicity in animal models of infection. This enhanced virulence appears to be due at least in part to the binding of fibrinogen via Srr1, resulting in increased microvascular invasion and CNS penetration.
In contrast, Srr2 is associated with hypervirulence, but the ligand for this adhesin was previously unknown. Although the binding regions of Srr1 and Srr2 have limited amino acid sequence homology, our findings demonstrate that Srr2 also binds human fibrinogen. In addition, the crystal structures of the binding regions of Srr1 and Srr2 indicate that these both resemble those of several other fibrinogen-binding proteins, including ClfA and ClfB of S. aureus, and SdrG of S. epidermidis (19, 21, 43, 50). These and a number of other adhesins of Gram-positive bacteria bind fibrinogen through a DLL-like mechanism (35, 47, 51, 52). Co-crystal structures of MSCRAMMs with peptide mimetics of host ligands have revealed that an extended conformation of the polypeptide binds within a cleft between the N2 and N3 domains and forms a β-strand that hydrogen bonds to (and completes) a β-sheet of the N3 domain. This docking of host peptide to the trench in turn induces the C-terminal extension of the MSCRAMM to fold over the host ligand and lock it down. Variations of the DLL mechanism include whether the MSCRAMM has an inactivated state that requires a conformational change prior to binding the host ligand, whether the host ligand binds parallel or antiparallel to the strands of the MSCRAMM, and whether the latch can be closed before (latch and dock) or after (dock, lock, and latch) binding of the peptide mimetic of the host ligand (20, 21, 35, 39, 43, 51).
Srr1 and Srr2 appear to bind fibrinogen by a DLL process, because these share a fold with DLL proteins and because deletion of the predicted latch domains of the SRR proteins significantly reduced fibrinogen binding. As noted above, a shared feature of DLL adhesins is the binding of fibrinogen through a trench formed between two IgG-like folds within the binding domain. Although sequence alignment of the binding regions of Srr1 and Srr2 revealed little homology between their putative binding trenches or with the binding subdomain of ClfA (data not shown), the structures of Srr1 and Srr2 suggest that the binding trenches are more similar to each other than to other DLL proteins, consistent with the trench sequence conferring ligand selectivity. Notably, a bulky amino acid of the N3 domain (Tyr-623 of Srr1 and His-528 of Srr2) significantly constricts the center of each trench. In other structurally characterized DLL proteins, this location harbors a conserved asparagine.
One interesting finding is that, although the Srr proteins interact with the same region of fibrinogen, the binding affinity of Srr2 was higher, both when measured by SPR (using whole fibrinogen as the ligand) and by ITC (using recombinant tandem repeats 6–8). Examination of the structures of the S. agalactiae Srr1 and Srr2 binding regions suggests how Srr2 might have greater affinity for the host ligand. In Srr2, the C-terminal latch of N3 appears to be pre-ordered in a conformation that might best be called “open, but ajar” that is poised to close over host ligand quickly. Experimentally reported time scales for protein conformational changes can vary widely, and the time scales of the conformational changes in Srr1 and Srr2 have not been measured. Although the cysteine cross-linking studies suggest that both Srr1 and Srr2 C termini are able to close even in the absence of ligand, the pre-ordered conformation of the C terminus in Srr2 would almost certainly require less time to do so. This would theoretically increase the kon and reduce the koff, and it could be numerically reflected as improved ligand affinity. This is consistent with previous studies of the MSCRAMM ClfA (43), where the introduction of a disulfide bond in the latch resulted in an increase in affinity for peptides corresponding to host ligand, which bind to the cleft in an antiparallel fashion. Interestingly, the converse was observed when disulfide bonds were added to the latch of SdrG (39), which binds the host peptide mimetic in a parallel orientation (21).
Although the biological implications of this difference in affinity are unclear, it is noteworthy that Srr2 is expressed exclusively by GBS serotype III strains belonging to the ST-17 clonal complex. These organisms have been strongly associated with neonatal invasive infections (16, 22–26, 53). Few ST-17-specific virulence factors have been described to explain this enhanced pathogenicity of ST-17 strains, although it is likely that more than one virulence determinant contributes to the hypervirulence of this sequence type (27, 53). Of note, the surface protein HvgA is exclusively expressed by ST-17 strains, and its expression has been shown to promote GBS attachment to endothelial and epithelial cell lines (53). However the host receptor for HvgA remains to be elucidated.
Intriguingly, in contrast to the binding trenches, there is significant sequence homology among the latch-binding subdomain (“latching cleft”) of Srr1 and Srr2 (Table 4), with both having a conserved cleft motif. Alignment of the Srr1- and Srr2-predicted latching clefts with those of other DLL adhesins showed that Srr1 has closer homology to these other DLL proteins, as compared with Srr2. Thus although the structure of the latch may control binding affinity, the influence of sequence differences in the latching clefts on the structure of the latch is unclear.
TABLE 4.
DLL-binding adhesin | Latching cleft | Cleft-latch residue spacing | Latch motif | Organism | Ref. |
---|---|---|---|---|---|
ClfA | IYTFTDYVN | 207 | GSGSGDG | S. aureus | 43 |
ClfB | TFVFTDYVN | 204 | GGGSADG | S. aureus | 19 |
SdrC | TYTFTNYVD | 196 | GSSTANG | S. aureus | 21 |
SdrD | TYTFTDYVD | 212 | NQSGGAG | S. aureus | 21 |
SdrE | TYTFTDYVD | 216 | GGGDGTV | S. aureus | 21 |
SdrG | TYTFTDYVD | 207 | SSGQGQG | S. epidermidis | 21 |
SdrF | TYTFTNYVD | 200 | GSSTAQG | S. epidermidis | 21 |
FnbpA | RYTFTNDIE | 210 | NKANGNE | S. aureus | 21, 35 |
FnbpB | RYTFKEYVQ | 204 | NNAQGDG | S. aureus | 21, 52 |
Srr1 | TYTWTRYAS | 209 | GDSDANA | S. agalactiae | 4 |
Srr2 | VYSFTDFAA | 200 | GYSDVNA | S. agalactiae | This study |
The binding site on fibrinogen for staphylococcal adhesins is typically composed of about 20 amino acids on one of the fibrinogen chains. For example, ClfA recognizes the C-terminal 17 residues of the γ chain (GEGQQHHLGGAKQAGDV); ClfB binds to 16 residues (tandem repeat 5; GSWNSGSSGTGSTGNQ) in the αC domain of the Aα chain, and SdrG binds the N-terminal 20 residues of the β chain (NEEGFFSARGHRPLDKKREE) (19, 43, 50). Although Srr1 and Srr2 also interact with the C terminus of the Aα chain, the binding site for both adhesins is contained within the adjacent tandem repeats 6–8 of the protein (NPGSPRPGSTGTWNPGSSERGSAGHWTSESSVSGSTGQW). Thus, not only do these bacterial surface proteins bind fibrinogen via a DLL-like mechanism, but these adhesins can interact with different regions of fibrinogen.
In vivo, GBS may interact with fibrinogen through several pathways, in addition to Srr1- or Srr2-mediated binding. Studies by Harris et al. (54) identified a cell wall-anchored protease of GBS (CspA) that both cleaved the fibrinogen Aα chain in vitro and appeared to mediate fibrinogen-dependent aggregation of whole bacteria. Deletion or disruption of cspA was associated with both increased opsonophagocytosis by neutrophils and decreased virulence in an animal model of neonatal sepsis. In addition, GBS may complement binding of Srr1 and Srr2 with binding by other adhesins. FbsA and FbsB are two additional surface proteins that also mediate GBS binding to human fibrinogen (55–59). These adhesins appear to be structurally unrelated to each other or the SRR proteins, and neither protein is associated with a DLL binding mechanism. The binding site on fibrinogen for FbsA is contained within the D fragment (60) but has not been further characterized. No binding site for FbsB has as yet been identified. Expression of FbsA enhances GBS binding to human epithelial and endothelial cells (61, 62), but it does not appear to contribute to cell invasion (63). In addition, fibrinogen binding via FbsA reduced uptake by a macrophage cell line (64), indicating that it may block phagocytosis. Deletion of fbsA attenuated the virulence of GBS in animal models of arthritis and septicemia (65), indicating that this protein contributes to pathogenicity of the organism. FbsB promotes GBS invasion of human brain microvascular cells (58), although the in vivo relevance of this phenotype remains to be examined. Recent proteomic screening identified two additional fibrinogen-binding proteins expressed by GBS, the fibronectin-binding protein Fib and a predicted ABC transporter (SAG0242) (66). The mechanisms for fibrinogen binding by these proteins are unknown, and the importance of these interactions for colonization or virulence has not as yet been described.
The results presented in this study show that Srr2 is an ST-17-specific surface protein that, like Srr1 (present in other GBS sequence types), interacts with fibrinogen through a DLL mechanism and promotes GBS attachment to human brain endothelial cells. Previous in vivo studies have shown that strains expressing Srr2 are more virulent than Srr1-expressing strains, as measured by a mouse model of sepsis (16). These findings suggest that, although both Srr proteins interact with fibrinogen, the increased affinity of Srr2 for the protein may be one factor contributing to the enhanced pathogenicity and invasive disease associated with ST-17 strains. Studies to address these issues are now in progress.
Acknowledgments
We thank Peter Hwang (University of California at San Francisco) for assistance with the SPR studies, Wendy Thomas (University of Washington) for valuable suggestions, and Jeannine Brady (University of Florida) and Craig Rubens (Seattle Children's Hospital) for providing GBS isolates. Use of the Advanced Photon Source, an Office of Science User Facility operated for the United States Department of Energy Office of Science by Argonne National Laboratory, was supported by the United States Department of Energy under Contract DE-AC02–06CH11357. Use of the LS-CAT Sector 21 was supported by the Michigan Economic Development Corp. and Michigan Technology Tri-Corridor Grant 085P1000817.
This work was supported, in whole or in part, by National Institutes of Health Grants R01-AI41513 and R01-AI057433 (to P. M. S.), R01-NS051247 (to K. S. D.), R01-GM09563 and R01-GM079419 (to T. M. I.), and HHSN272201200026C from NIAID (Department of Health and Human Services). This work was also supported by the Department of Veterans Affairs and the Veterans Affairs Merit Review program, the Northern California Institute for Research and Education, a fellowship award from the American Heart Association, Western Affiliate (to H. S. S.), and Grant 12GRNT11920011 from the American Heart Association.
The atomic coordinates and structure factors (codes 4MBO and 4MBR) have been deposited in the Protein Data Bank (http://wwpdb.org/).
- SRR
- serine-rich repeat
- GBS
- group B streptococci (Streptococcus agalactiae)
- DLL
- dock, lock, and latch
- ITC
- isothermal calorimetry
- hBMEC
- human brain microvascular endothelial cells
- MSCRAMM
- microbial surface components recognizing adhesive matrix molecules
- CFU
- colony-forming unit
- MBP
- maltose-binding protein
- SPR
- surface plasmon resonance
- BR
- binding region
- RU
- repeating unit
- LS-CAT
- Life Sciences Collaborative Access Team.
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