Skip to main content
Proceedings of the National Academy of Sciences of the United States of America logoLink to Proceedings of the National Academy of Sciences of the United States of America
. 1986 Nov;83(22):8589–8593. doi: 10.1073/pnas.83.22.8589

Structural homology of reaction centers from Rhodopseudomonas sphaeroides and Rhodopseudomonas viridis as determined by x-ray diffraction.

J P Allen, G Feher, T O Yeates, D C Rees, J Deisenhofer, H Michel, R Huber
PMCID: PMC386976  PMID: 3022298

Abstract

Crystals of the reaction center (RC) from Rhodopseudomonas sphaeroides with the space group P2(1)2(1)2(1), have been studied by x-ray diffraction. The Patterson search (molecular replacement) technique was used to analyze the data, with the structure of the reaction center from Rhodopseudomonas viridis as a model system. A preliminary electron density map of the reaction center from R. sphaeroides has been obtained. Comparison of the structure of the RC from R. sphaeroides with that from R. viridis showed the following conserved features: five membrane-spanning helices in each of the L and M subunits, a single membrane-spanning helix in the H subunit, a 2-fold symmetry axis, and similar positions and orientations of the cofactors. Unlike the RCs from R. viridis, both quinones are retained in the RCs from R. sphaeroides. The secondary quinone is located near the position related by the 2-fold symmetry axis to the primary quinone.

Full text

PDF
8589

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Allen J. P., Feher G. Crystallization of reaction center from Rhodopseudomonas sphaeroides: preliminary characterization. Proc Natl Acad Sci U S A. 1984 Aug;81(15):4795–4799. doi: 10.1073/pnas.81.15.4795. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Bunker G., Stern E. A., Blankenship R. E., Parson W. W. An x-ray absorption study of the iron site in bacterial photosynthetic reaction centers. Biophys J. 1982 Feb;37(2):539–551. doi: 10.1016/S0006-3495(82)84699-7. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Butler W. F., Calvo R., Fredkin D. R., Isaacson R. A., Okamura M. Y., Feher G. The electronic structure of Fe2+ in reaction centers from Rhodopseudomonas sphaeroides. III. EPR measurements of the reduced acceptor complex. Biophys J. 1984 May;45(5):947–973. doi: 10.1016/S0006-3495(84)84241-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Chang C. H., Tiede D., Tang J., Smith U., Norris J., Schiffer M. Structure of Rhodopseudomonas sphaeroides R-26 reaction center. FEBS Lett. 1986 Sep 1;205(1):82–86. doi: 10.1016/0014-5793(86)80870-5. [DOI] [PubMed] [Google Scholar]
  5. Deisenhofer J., Epp O., Miki K., Huber R., Michel H. X-ray structure analysis of a membrane protein complex. Electron density map at 3 A resolution and a model of the chromophores of the photosynthetic reaction center from Rhodopseudomonas viridis. J Mol Biol. 1984 Dec 5;180(2):385–398. doi: 10.1016/s0022-2836(84)80011-x. [DOI] [PubMed] [Google Scholar]
  6. Eisenberger P., Okamura M. Y., Feher G. The electronic structure of Fe2+ in reaction centers from Rhodopseudomonas sphaeroides. II. Extended x-ray fine structure studies. Biophys J. 1982 Feb;37(2):523–538. doi: 10.1016/S0006-3495(82)84698-5. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Feher G., Hoff A. J., Isaacson R. A., Ackerson L. C. ENDOR experiments on chlorophyll and bacteriochlorophyll in vitro and in the photosynthetic unit. Ann N Y Acad Sci. 1975 Apr 15;244:239–259. doi: 10.1111/j.1749-6632.1975.tb41534.x. [DOI] [PubMed] [Google Scholar]
  8. Hendrickson W. A. Stereochemically restrained refinement of macromolecular structures. Methods Enzymol. 1985;115:252–270. doi: 10.1016/0076-6879(85)15021-4. [DOI] [PubMed] [Google Scholar]
  9. Howard A. J., Nielsen C., Xuong N. H. Software for a diffractometer with multiwire area detector. Methods Enzymol. 1985;114:452–472. doi: 10.1016/0076-6879(85)14030-9. [DOI] [PubMed] [Google Scholar]
  10. Michel H. Three-dimensional crystals of a membrane protein complex. The photosynthetic reaction centre from Rhodopseudomonas viridis. J Mol Biol. 1982 Jul 5;158(3):567–572. doi: 10.1016/0022-2836(82)90216-9. [DOI] [PubMed] [Google Scholar]
  11. Michel H., Weyer K. A., Gruenberg H., Dunger I., Oesterhelt D., Lottspeich F. The 'light' and 'medium' subunits of the photosynthetic reaction centre from Rhodopseudomonas viridis: isolation of the genes, nucleotide and amino acid sequence. EMBO J. 1986 Jun;5(6):1149–1158. doi: 10.1002/j.1460-2075.1986.tb04340.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Michel H., Weyer K. A., Gruenberg H., Lottspeich F. The ;heavy' subunit of the photosynthetic reaction centre from Rhodopseudomonas viridis: isolation of the gene, nucleotide and amino acid sequence. EMBO J. 1985 Jul;4(7):1667–1672. doi: 10.1002/j.1460-2075.1985.tb03835.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Norris J. R., Druyan M. E., Katz J. J. Electron nuclear double resonance of bacteriochlorophyll free radical in vitro and in vivo. J Am Chem Soc. 1973 Mar 7;95(5):1680–1682. doi: 10.1021/ja00786a066. [DOI] [PubMed] [Google Scholar]
  14. Norris J. R., Scheer H., Katz J. J. Models for antenna and reaction center chlorophylls. Ann N Y Acad Sci. 1975 Apr 15;244:260–280. doi: 10.1111/j.1749-6632.1975.tb41535.x. [DOI] [PubMed] [Google Scholar]
  15. Packham N. K., Dutton P. L., Mueller P. Photoelectric currents across planar bilayer membranes containing bacterial reaction centers. Response under conditions of single electron turnover. Biophys J. 1982 Feb;37(2):465–473. doi: 10.1016/S0006-3495(82)84693-6. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Williams J. C., Steiner L. A., Feher G., Simon M. I. Primary structure of the L subunit of the reaction center from Rhodopseudomonas sphaeroides. Proc Natl Acad Sci U S A. 1984 Dec;81(23):7303–7307. doi: 10.1073/pnas.81.23.7303. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Williams J. C., Steiner L. A., Ogden R. C., Simon M. I., Feher G. Primary structure of the M subunit of the reaction center from Rhodopseudomonas sphaeroides. Proc Natl Acad Sci U S A. 1983 Nov;80(21):6505–6509. doi: 10.1073/pnas.80.21.6505. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Youvan D. C., Bylina E. J., Alberti M., Begusch H., Hearst J. E. Nucleotide and deduced polypeptide sequences of the photosynthetic reaction-center, B870 antenna, and flanking polypeptides from R. capsulata. Cell. 1984 Jul;37(3):949–957. doi: 10.1016/0092-8674(84)90429-x. [DOI] [PubMed] [Google Scholar]

Articles from Proceedings of the National Academy of Sciences of the United States of America are provided here courtesy of National Academy of Sciences

RESOURCES