Mitochondrial Homeostasis in Acute Organ Failure

Abstract

The kidneys compose approximately 0.5% of the body mass but consume about 10% of the oxygen in cellular respiration. This discordance is due to the high energy demands on the kidney for reabsorption of filtered blood components and makes the kidney sensitive to mitochondrial stress, the primary source of cellular ATP. Regardless of the etiology, acute kidney injury (AKI) almost always involves aspects of mitochondrial dysfunction. Recent evidence from experimental models suggests that preserving mitochondrial function or promoting mitochondrial repair rescues renal function during AKI. In this review we discuss the effect of AKI on disruption of mitochondrial homeostasis, and how the dynamic processes of mitochondrial biogenesis, fission/fusion, and mitophagy influence renal injury and recovery.

Introduction

The primary functions of the kidney are to regulate body fluid volume, electrolyte balance, and excretion of waste products such as urea, ammonia, and xenobiotics. The kidney also secretes hormones (e.g. renin) which, along with maintaining fluid volume, help regulate blood pressure. There is a high demand for energy in the kidney due to the constant reabsorption of ions, small molecules, and peptides which occurs through active transport in the tubular epithelium. Renal epithelial cells, therefore, rely heavily on mitochondrial oxidative phosphorylation to supply sufficient ATP, which renders the kidney susceptible to injury due to energy deprivation and mitochondrial toxicants.

Acute kidney injury (AKI) is defined as an abrupt reduction in renal function associated with decreased urine output and an accumulation of serum waste products, namely urea and creatinine [1] (Fig 1). The prevalence of AKI is 2–7% in hospital inpatients [2] and increases dramatically with diagnosis of sepsis [3] or admission to the ICU [4, 5]. AKI mortality is 50–80% depending on severity of injury and population studied, and has not changed for decades [6–9]. Additionally, the medical expenses associated with treatment of AKI have been estimated to exceed $8 billion per year in the U.S. [10, 11]. Given the absence of viable drug therapies for AKI, it is clear that new targets are needed for therapeutic intervention. In this minireview we address recent advances in the field identifying mitochondrial dysfunction as a potential therapeutic target for AKI.

Figure 1. Dynamic processes affecting mitochondrial injury and recovery during the progression of AKI.

Following insult to the kidney (ischemia, endotoxemia, toxicant exposure), development of AKI is defined as a loss of renal function, and characterized by a rise in serum creatinine. At the cellular level, elevated intracellular and mitochondrial calcium concentrations, increased production of reactive oxygen species (ROS), permeabilization of the mitochondrial outer membrane (MOMP), and loss of mitochondrial membrane potential (ΔΨm) and ATP production, coincide with mitochondrial damage, fragmentation, and dysfunction. Over time, mitochondrial and renal function can be restored (blue line), and specific mitochondrial-targeted processes may facilitate recovery, including enhanced PGC-1α/mitochondrial biogenesis signaling [47], stimulation of autophagy [82, 85], inhibition of Drp1/mitochondrial fission [64, 65], or reduced Bax/Bak expression [72]. Persistent mitochondrial and kidney injury (red line) may result under conditions of PGC-1α deficiency [49], insufficient autophagy [79, 81, 82], or reduced Mfn2/mitochondrial fusion [66].

Mitochondrial dysfunction is a cornerstone of AKI pathophysiology

Mitochondrial damage is a major contributor to the lethal and sublethal tubular cell injury observed in the initiation and progression of AKI [12–16]. Increased production of reactive oxygen species (ROS), formed prominently within the mitochondria, as well as compromised antioxidant mechanisms after injury make the mitochondria particularly susceptible [17–20]. Additionally, elevations in intracellular and mitochondrial Ca²⁺ and Fe³⁺ may contribute to the central role of the mitochondria in the disease process [14, 21] (Fig 1).

There is ample evidence indicating that mitochondrial dysfunction precedes renal dysfunction in animal models of AKI. Isolated proximal tubules subjected to hypoxia/reperfusion developed severe mitochondrial functional deficits, decreased mitochondrial membrane potential, and persistent ATP depletion [12, 15, 22]. In vivo, mitochondrial membrane potential decreased as soon as 2 min after the onset of renal ischemia [23]. Similar results were found using ex vivo imaging of kidney slices after 10 min of reperfusion [19]. The nephrotoxin HgCl₂ inhibited mitochondrial ADP uptake and state 3 mitochondrial respiration in less than 3 h in vivo, while renal function was not affected until 12 h [24]. In animal models of septic AKI, treatment with lipopolysaccharide (LPS) decreased renal ATP [25] and increased renal lactate levels [26] in less than 4 h, well before the onset of AKI. Mitochondrial structure and function were damaged in the proximal and distal tubules 3 h after direct infusion of LPS to isolated kidneys [27]. These temporal studies suggest that mitochondrial dysfunction is an early pathology in AKI and may be driving the cell death and organ failure.

Persistent mitochondrial dysfunction is also a hallmark of AKI. Funk et al. showed that several markers of mitochondrial content, including electron transport chain (ETC) proteins and mitochondrial DNA (mtDNA) copy number, decrease quickly after ischemia/reperfusion- (I/R) and myoglobinuric-AKI and remain suppressed for 6 d [28]. In a gentamicin-induced AKI model, mitochondrial respiration defects and opening of the mitochondrial permeability transition pore (MPTP) were seen after 6 d [29]. Zsengellér et al. used functional electron microscopy to demonstrate that cytochrome c oxidase (COX) enzyme activity decreased 3 d after a dose of the chemotherapeutic drug cisplatin that caused AKI at day 1 [30]. We suggest that mitochondrial dysfunction persists even with partial or complete recovery of renal function [28] and may be a sensitive biomarker of renal function.

The localization of mitochondrial dysfunction raises interesting questions about its impact on renal function. While the outer stripe of the outer medulla (OSOM) is the primary site of cell death in many AKI models including cisplatin [31], I/R [32], and HgCl₂ [33], recent studies by Funk et al. and others have characterized specific mitochondrial dysfunction in the renal cortex in the absence of gross cell death [28–30]. This observation indicates that 1) mitochondrial function is disrupted outside the primary target area (e.g. the S₃ segment of the proximal tubule), 2) renal function is also decreased in the outer cortex, and 3) potential therapeutics also need to address this mitochondrial dysfunction.

There is extensive evidence of mitochondrial dysfunction in acute organ failure other than the kidney. Sepsis-induced heart failure caused myriad toxic effects on myocardial mitochondria including swelling, decreased respiration, and increased ROS production [34]. Liver failure in humans is most commonly caused by acetaminophen (APAP) [35], which causes hepatotoxicity through its toxic metabolite by induction of mitochondrial ROS [36]. Traumatic brain injury induced mitochondrial dysfunction includes increases in ROS production and reduced mitochondrial respiration rates [37, 38]. The significant connection between mitochondrial dysfunction and acute and critical diseases has been reviewed [39] and suggests that mitochondria are a potential therapeutic target for diseases including AKI, which currently have limited therapies. The remainder of this review will focus on specific pathways affecting mitochondrial homeostasis, particularly in AKI.

Mitochondrial Biogenesis

Mitochondrial biogenesis involves a complex, coordinated effort pairing a nuclear signal and response with a mitochondrial response. A variety of factors such as exercise, cold exposure, and injury, can stimulate mitochondrial biogenesis by turning on signaling pathways including NOS/cGMP, p38 MAPK, SIRT1, and AMPK [40]. The program includes activation of nuclear hormone receptors such as the peroxisome proliferator activated receptors (PPARs) and estrogen-related receptors (ERRs), and transcription factors and co-activators including PPARγ co-activator-1α (PGC-1α), the master regulator of mitochondrial biogenesis. The majority of genes expressed in mitochondria are transcribed from the nuclear genome, synthesized, and translocated to the mitochondrion because the mitochondrial genome only encodes 13 electron transport chain proteins. The complete mitochondrial biogenic program has been comprehensively reviewed elsewhere [41].

Initial observations that PGC-1α and mitochondrial biogenesis may play a pivotal role in renal cell recovery were performed in primary renal proximal tubule cell (RPTC) culture models with oxidant injury [42–44]. Severe mitochondrial dysfunction occurred within 24 h of acute oxidant exposure, represented by dramatic reductions in ATP levels and mitochondrial oxygen consumption which spontaneously recovered over several days [43, 45]. Recovery of mitochondrial function in oxidant-injured RPTC was further clarified with the discovery that PGC-1α was robustly elevated in response to the insult via a Src-EGFR-p38 MAPK signaling pathway, and recovery could be expedited through adenoviral overexpression of PGC-1α or by pharmacological stimulation of mitochondrial biogenesis [42, 44, 46]. In a related study examining glomerular toxicity, Yuan et al. reported decreased PGC-1α expression, which correlated with mitochondrial and podocyte injury, following exposure to aldosterone [47]. The authors also found that mitochondrial and cell injury could be attenuated by overexpressing PGC-1α or by overexpressing or pharmacologically stimulating SIRT1, a key regulator of PGC-1α activity. Weinberg has recently summarized some of the studies identifying mitochondrial biogenesis as a potential target in renal disease [48].

The role of PGC-1α in recovery of renal function was recently explored in an endotoxic AKI model [49]. Marked mitochondrial dysfunction was observed in the cortex and the corticomedullary junction of LPS-exposed mice, which was characterized by the loss of cytochrome c oxidase expression and activity, mitochondrial swelling, and rarefaction of mitochondrial cristae [49]. Renal expression of PGC-1α mapped predominantly to cortical proximal tubules, and expression correlated with kidney function, with PGC-1α mRNA and protein suppressed early after injury and restored during recovery [49]. Finally, global and proximal tubule (PT)-specific PGC-1α knockout resulted in persistent AKI following endotoxin exposure, confirming that recovery of renal function was dependent on recovery of PGC-1α expression [49] (Fig 1).

In agreement with the report by Tran et al. recent studies from our laboratory examined mitochondrial dysfunction in the outer cortex of a renal I/R injury model, a region outside of the overt necrosis seen in the OSOM, and demonstrated suppressed PGC-1α mRNA early after reperfusion (between 0–72 h) which was restored as renal function partially recovered (between 72–144 h after reperfusion) [28]. Interestingly, PGC-1α protein was robustly expressed at the later time points in both the I/R model and glycerol-induced myoglobinuric injury model [28]; however, ETC proteins did not recover in the same time frame, which is consistent with the lack of full recovery of PT histology or renal function markers. Our unpublished observations revealed that restoration of mitochondrial proteins coincides with full recovery of renal function (approximately two weeks after injury), suggesting a delayed restoration following the induction of PGC-1α. In addition to the studies described, suppressed PGC-1α mRNA has also been reported in cisplatin nephrotoxicity, supporting the concept that signaling for mitochondrial biogenesis is decreased after injury and recovery of biogenesis could promote renal functional recovery [28, 47, 50].

The case for PGC-1α as an important molecular switch in organ dysfunction and repair is supported by the findings in acute injuries to extra-renal tissues. Alterations in PGC-1α expression and mitochondrial biogenesis have also been reported in models of myocardial infarction (MI), partial hepactectomy, and stroke [51–53], suggesting some overlapping mechanisms of injury and repair following mitochondrial-targeted injuries, although the exact responses may vary in different tissues. Reduced PGC-1α mRNA has been reported in heart failure in rats, and PGC-1α expression correlated with cardiac oxidative capacity, suggesting that reduced PGC-1α was involved in the pathophysiology of heart failure [51, 54]. The finding was confirmed in PGC-1α-deficient mice, which experienced accelerated cardiac dysfunction compared to matched wild type mice in a model of transverse aortic constriction [55]. More importantly, in studies examining gene expression in human cardiomyopathy, Sihag et al., observed reduced PGC-1α and ERRα in failing hearts [56]. The levels were correlated with left ventricular ejection fraction, which implicated reduced PGC-1α, ERRα, and mitochondrial biogenesis in the pathophysiology of heart failure. In an ischemic brain injury model, Yin et al. reported an increase in mitochondrial biogenesis almost immediately after reperfusion [53]. Although PGC-1α expression did not change, the authors observed increased mtDNA content, elevated mitochondrial proteins and citrate synthase activity, and increased expression of NRF-1 and mitochondrial transcription factor A (Tfam). In a related study, overexpression of Tfam was neuroprotective in a transient forebrain ischemia model [57]. As more data support the idea that mitochondrial biogenesis is a key target of acute organ failure, this pathway becomes a better target for therapeutic intervention to improve recovery.

Mitochondrial Dynamics

Mitochondrial morphology influences function, and morphological stability is governed by a balance of the dynamic processes controlling mitochondrial fusion and fission. Mitochondrial fusion, which involves multiple steps to tether membranes of adjacent mitochondria and share intramitochondrial components, is primarily driven by the dynamin-related GTPases, mitofusin1 (Mfn1) and mitofusin2 (Mfn2) at the outer mitochondrial membrane (OMM) and Opa1 on the inner membrane. Mitochondrial fission is primarily controlled by fission protein 1 (Fis1), which is localized on the OMM as an anchor protein for dynamin-related protein 1 (Drp1), a cytosolic GTPase recruited to mitochondrial scission sites. Additionally, recent findings have implicated the pro-apoptotic molecules, Bax and Bak, as regulators of mitochondrial morphology and fragmentation, intimately linked with mitochondrial outer membrane permeabiliztion (MOMP) and cell death [58, 59]. There are a number of constituents and biological factors that affect mitochondrial dynamics is various systems and disease states, which is beyond the scope of this review, but have been previously described in detail [60–62].

Drp1 mRNA is highly expressed in the human kidney, in addition to the heart, brain, and skeletal muscle [63], and therefore may play a central role in the pathophysiology of mitochondrial-targeted injuries to these organs. Brooks et al. elegantly demonstrated the pathological consequences of excess mitochondrial fission after injury to renal cells and the acquired protection by blocking the response [64]. The authors showed that both cisplatin and chemical anoxia induced Drp1-dependent mitochondrial fragmentation, which preceded cytochrome c release and apoptosis in RPTC. Dominant-negative Drp1 or siRNA-reduced expression of Drp1 preserved mitochondrial morphology, and protected against cytochrome c release and apoptosis in vitro [64]. They further demonstrated mitochondrial fragmentation in I/R and cisplatin in vivo models, and were able to protect renal function with mdivi-1, a pharmacological inhibitor of Drp1 [64]. Similar renoprotective effects were observed with Drp1 inhibition in the glycerol-induced myoglobinuric model, in which mdivi-1 treatment attenuated tubular apoptosis compared to control animals [65] (Fig 1).

A recent study examining kidney-specific Mfn2 deletion under basal and stressed conditions further supported the benefits of preserved mitochondrial fission/fusion balance following renal cell injury [66]. Mitochondrial fragmentation increased in kidneys and cultured renal epithelial cells from the Mfn2-knockout mice; however, oxygen consumption and ATP turnover were not affected, and apoptosis was not increased under basal conditions [66]. Following ATP depletion with sodium cyanide exposure, mitochondrial-associated Bax, cytosolic cytrochrome c and apoptosis-inducing factor (AIF), and apoptotic cell death were elevated in the Mfn2-deficient cells compared to controls [66].

The Bcl-2 family proteins, Bax and Bak, have been implicated in human kidney disease [67–69], and although they are most commonly associated with progression of apoptosis, recent findings suggest a more complex role for these proteins in the maintenance of mitochondrial morphology under normal and stress conditions [62]. From a series of studies performed in his lab, Zheng Dong and colleagues described the involvement of Bak and Bax in mitochondrial fragmentation, mitochondrial permeabilization, and renal pathophysiology [70–72]. Whereas it was associated with Mfn2 under physiological conditions, Bak associated with and inhibited Mfn1 under apoptotic conditions in several cell stress models [70]. Following azide, staurosporine, or cisplatin treatment, they observed mitochondrial fragmentation, cytochrome c release, and cell death, which was attenuated in Bak-deficient cells. Cytochrome c release and apoptosis, but not mitochondrial fragmentation, were also attenuated in Bax-deficient cells, illustrating the slightly different roles of these molecules in mitochondrial injury [70]. Importantly, in a murine model of renal I/R, Wei et al. demonstrated that global deletion of Bak inhibited mitochondrial fragmentation, suppressed cytochrome c release, and protected against tubule apoptosis and renal dysfunction [72]. The authors also observed renal protection in mice with proximal tubule-specific Bax deletion, validating the function of these proteins as regulators of mitochondrial integrity and renal pathology in vivo [72].

Outside of renal pathophysiology, disruption of mitochondrial dynamics appears to be a pivotal component of acute injuries to other tissues, including the heart and the brain. Ong et al. demonstrated that inhibition of mitochondrial fission was cardioprotective in an ischemia-reperfusion injury [73]. In cardiomyocyte cell models with simulated ischemia, the authors showed that overexpression of mitofusin proteins, Mfn1 or Mfn2, or inhibition of Drp1 was mitochondrial- and cytoprotective. Additionally, mdivi-1 pretreatment in a mouse model of MI significantly reduced infarct size compared to vehicle-treated animals at two hours post-reperfusion [73]. Similarly, treatment with the Drp1 inhibitors mdiviA and mdiviB reduced infarct size in a mouse model of transient focal brain ischemia [74]. Additionally, and in agreement with findings in the kidney, Whelan et al. reported preservation of mitochondrial morphology and cardioprotection in mice lacking Bak and Bax that underwent MI [75]. The results of these studies suggest common mechanisms of mitochondrial membrane instability and permeability leading to organ dysfunction in various tissue injuries.

Autophagy and Mitophagy

Autophagy, also referred to as macroautophagy, is the bulk degradation of cytosolic components, including aged or damaged proteins, other macromolecules, and organelles. The process of autophagy involves the formation of a membranous structure, mediated by the initiating complex of class 3 phosphatidylinositol-3-kinase (PI3KCl3) and Beclin-1, the lipidated microtubule-associated protein light-chain-3 (LC3-II), and the adaptor protein p62, which sequesters flagged organelles or portions of cytosol into a vesicle known as an autophagosome. The autophagosome fuses with a lysosome to create an autolysosome, which proceeds to degrade the sequestered contents. In addition to the players listed above, a number of autophagy-specific proteins, identified as Atg proteins, have been characterized in yeast and mammalian systems [76]. Several of these are discussed in more detail below. Mitochondrial autophagy (mitophagy) is the selective engulfment of depolarized mitochondria, involving identification by PTEN-induced kinase 1 (PINK1) and ubiquitylation of OMM proteins by Parkin. The details surrounding PINK1- and Parkin-mediated mitophagy were extensively covered recently [77].

Several studies have examined the role of the autophagic response in AKI and renal disease since the finding that LC3 and Beclin-1 increased after I/R injury in the rat [78]. PT-specific Atg5 knockout mice accumulated morphologically-defective mitochondria and were more susceptible to I/R-induced PT apoptosis and elevated BUN and serum creatinine [79]. Atg5 forms complex with Atg12 and Atg16 that is essential in formation of the sequestration vesicle [80], and PT-specific Atg5 knockout mice were also more susceptible to cisplatin-induced AKI [81]. The authors found that cisplatin exposure exacerbated renal injury by functional markers and histopathology, and increased DNA damage, p53 activation, and apoptosis in PT-specific Atg5 knockout mice. Atg5-deficient PT cells exhibited an accumulation of ROS-producing mitochondria compared to wild type cells [81]. Jiang et al. also found that PT-specific deletion of Atg7, a key protein in the conjugation of phosphatidylethanolamine to LC3-I to form LC3-II, sensitized mice to cisplatin- and I/R-induced AKI [82]. PT-Atg7 knockouts had a deficient autophagic response, elevated BUN and serum creatinine, and more severe tubular histopathology and apoptosis after AKI [82]. The authors also demonstrated that pharmacological inhibition of autophagy produced results that were similar to those observed in the knockout studies, with elevated creatinine, BUN, and tissue damage in chloroquine-treated mice after cisplatin exposure [82]. Although mitochondrial effects were not specifically described in the study, previous studies have demonstrated that loss of Atg7 function results in accumulation of defective mitochondria [83, 84]; therefore, it could be speculated that deficient mitochondrial autophagy contributed to the resultant phenotype. Conversely, promoting autophagy by pharmacological intervention may be renoprotective after AKI [82, 85]. In a critically ill rabbit model, Gunst et al. identified insufficient autophagy in the kidneys and livers of hyperglycemic rabbits, which correlated with impaired mitochondrial function and, unlike mitochondrial fusion/fission and biogenesis, severity of organ dysfunction [85]. By stimulating autophagy with rapamycin, the authors were able to improve renal mitochondrial complex V activity, and normalize plasma creatinine levels [85] (Fig 1).

In addition to the studies from experimental models, there is evidence that mitophagy may play a role in cellular repair in human renal disease. In postmortem analysis of kidneys taken from septic patients, Takasu et al., described autophagosomes juxtaposed to membrane-damaged mitochondria in the tubular epithelium [86]. The authors claimed that the autophagic response did not appear to be associated with cell death, but rather reversible injury. Autophagic vacuoles containing abnormal mitochondria were also reported in the kidneys of a hemolytic patient presenting with AKI, establishing a common mechanism for removal of damaged mitochondria in human renal failure [87].

Selective removal of damaged mitochondria has also been suggested as protective mechanism in acute injuries to other tissues, including the heart and the liver. In a study examining the molecular mechanisms of mitophagy, it was found that cardiac mitophagy, which occurred after ischemic injury, was further promoted in p53-deficient mice, and corresponded with reduced accumulation of damaged mitochondria and cardioprotection [88]. The protective effects of p53 inhibition were reversed with chloroquine treatment, an inhibitor of autophagy. The protective effect of mitophagy was further illustrated in a model of cardiac ischemic preconditioning (IPC), as Parkin-deficient mice displayed dysfunctional p62 signaling and were resistant to IPC-cardioprotection [89]. Ni, et al., demonstrated the protective effects of autophagy in APAP hepatotoxicity [90]. APAP induced autophagy in the livers of exposed mice, which included selective removal of damaged mitochondria, and Inhibition of autophagy with chloroquine or 3-methyladenine exacerbated injury, while rapamycin-induced autophagy attenuated liver injury. Results from studies in the kidney and other organs indicate that autophagy, and specifically mitophagy, is a critical pathway for removal of damaged mitochondria and cellular repair after cell injury.

Conclusions

The preponderance of data supports a central role of mitochondrial dysfunction in the pathology of AKI. Numerous phenomenological and mechanistic studies have demonstrated that mitochondria are damaged at initiation of injury, and at the very least, the recovery of mitochondrial function is correlated with recovery of renal function, if not a primary driver of recovery. As depicted in Fig 1, mitochondria are at the center of a number of dynamic processes, initiated under either physiological or pathological conditions. Pathological signals leading to elevated levels of intracellular and mitochondrial Ca²⁺, increased production of reactive oxygen species, mitochondrial membrane permeabilization and depolarization, and loss of ATP are hallmarks of mitochondrial dysfunction. Abnormal mitochondrial biogenesis, fission/fusion, and autophagy have been characterized in experimental models of AKI as well as in human kidney disease, and restoration of physiological levels may be a primary determinant of not only recovery of mitochondrial function, but also recovery of organ function. In light of the studies discussed in this review, a number of critical questions need to be addressed. 1) Are mitochondria a suitable target for therapeutic intervention in human AKI? 2) What cellular pathway(s) trigger mitochondrial dysfunction so consistently in renal injuries with distinct etiologies, and could these be pharmacologically manipulated? 3) Which mitochondrial repair pathway(s) are essential to recovery of organ function in human AKI? There is support from experimental models that recovery of the master regulator of mitochondrial biogenesis PGC-1α after AKI is necessary for recovery of renal function [47, 49]. Other studies have demonstrated efficacy with drugs that target mitochondrial dynamics [64, 65] and autophagy [82, 85]. While these agents will require more testing before being translated into clinical trials, we suggest mitochondria are a promising new target for a disease that has had no new drugs approved for therapy and has an unacceptably high mortality rate.