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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2013 Oct 26;69(Pt 11):o1705. doi: 10.1107/S1600536813028535

1-(3,5-Di­fluoro­phen­yl)-4,4,4-tri­fluoro­butane-1,3-dione

KE Manoj Kumar a, B S Palakshamurthy b, P A Suchetan c, S Madan Kumar d, NK Lokanath d, S Sreenivasa a,*
PMCID: PMC3884355  PMID: 24454131

Abstract

In the title compound, C10H5F5O2, the C=O bonds are syn to one another. In the crystal, mol­ecules are linked into C(9) chains parallel to [101] through weak C—H⋯O inter­actions, with the O atom adjacent to the –CF3 group acting as the acceptor.

Related literature  

For biological-activity studies of compounds with tri­fluoro­methyl substituents, see: Manoj Kumar et al. (2013).graphic file with name e-69-o1705-scheme1.jpg

Experimental  

Crystal data  

  • C10H5F5O2

  • M r = 252.14

  • Monoclinic, Inline graphic

  • a = 12.393 (4) Å

  • b = 13.433 (5) Å

  • c = 12.877 (5) Å

  • β = 112.49 (2)°

  • V = 1980.7 (13) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 0.18 mm−1

  • T = 294 K

  • 0.24 × 0.20 × 0.16 mm

Data collection  

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009) T min = 0.959, T max = 0.972

  • 5651 measured reflections

  • 1604 independent reflections

  • 1246 reflections with I > 2σ(I)

  • R int = 0.040

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.074

  • wR(F 2) = 0.239

  • S = 1.08

  • 1604 reflections

  • 154 parameters

  • H-atom parameters constrained

  • Δρmax = 0.43 e Å−3

  • Δρmin = −0.47 e Å−3

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT-Plus (Bruker, 2009); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813028535/hb7151sup1.cif

e-69-o1705-sup1.cif (18.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813028535/hb7151Isup2.hkl

e-69-o1705-Isup2.hkl (79.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813028535/hb7151Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C3—H3⋯O2i 0.93 2.53 3.462 (5) 177

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors acknowledge the IOE X-ray diffractometer Facility, University of Mysore, Mysore, for the data collection. KEM and SS acknowledge Tumkur University, Tumkur, for providing laboratory facilities.

supplementary crystallographic information

1. Comment

As part of our ongoing studies of the biological activities of compounds with a trifluoromethyl substituent (Manoj Kumar et al., 2013), we now describe the structure of the title compound, (I).

The two C=O bonds are syn to one another (Fig.1), the O1—C7—C8—C9 and O2—C9—C8—C7 torsion angles being 0.4 (5) and -0.3 (6)°, respectively. In the crystal, the molecules are linked into C(9) chains parallel to [101] through a weak C3—H3···O2 interaction (Fig.2).

2. Experimental

3,5-Difluoroacetophenone (1 mmol) and sodium hydride (1.5 mmol) were taken in dry THF (20 ml), and the solution was stirred for 30 min at 0°C. To this solution trifluoroethylacetate (1.2 mmol) was added and the reaction mixture was stirred for 10 h at room temperature under nitrogen atmosphere. The reaction was monitored by TLC. The crude mass was purified by column chromatography using petroleum ether and ethyl acetate as an eluent (7:3), to obtain a yellow solid. Pale yellow prisms were obtained by recrystallisation fron dichloromethane/methanol (9:1) solution.

3. Refinement

The H atoms were positioned with idealized geometry using a riding model with C—H = 0.93–0.97 Å. All H atoms were refined with isotropic displacement parameters (set to 1.2 times of the Ueq of the parent atom).

Figures

Fig. 1.

Fig. 1.

Molecular structure of the title compound, showing displacement ellipsoids drawn at the 50% probability level.

Fig. 2.

Fig. 2.

Molecular packing foming C(9) chains parallel to [101] with hydrogen bonding shown as dashed lines.

Crystal data

C10H5F5O2 Prism
Mr = 252.14 Dx = 1.691 Mg m3
Monoclinic, C2/c Melting point: 393 K
Hall symbol: -C 2yc Mo Kα radiation, λ = 0.71073 Å
a = 12.393 (4) Å Cell parameters from 1023 reflections
b = 13.433 (5) Å θ = 0.0–24.6°
c = 12.877 (5) Å µ = 0.18 mm1
β = 112.49 (2)° T = 294 K
V = 1980.7 (13) Å3 Prism, colourless
Z = 8 0.24 × 0.20 × 0.16 mm
F(000) = 1008

Data collection

Bruker APEXII CCD diffractometer 1604 independent reflections
Radiation source: fine-focus sealed tube 1246 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.040
phi and ω scans θmax = 24.6°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009) h = −14→14
Tmin = 0.959, Tmax = 0.972 k = −15→7
5651 measured reflections l = −14→14

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.074 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.239 H-atom parameters constrained
S = 1.08 w = 1/[σ2(Fo2) + (0.1433P)2 + 2.2069P] where P = (Fo2 + 2Fc2)/3
1604 reflections (Δ/σ)max = 0.012
154 parameters Δρmax = 0.43 e Å3
0 restraints Δρmin = −0.47 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.0373 (3) 0.3441 (3) 0.4970 (3) 0.0558 (9)
H1 0.0691 0.4058 0.4923 0.067*
C2 −0.0308 (3) 0.3323 (3) 0.5594 (3) 0.0624 (10)
C3 −0.0787 (4) 0.2426 (3) 0.5705 (3) 0.0684 (11)
H3 −0.1238 0.2360 0.6135 0.082*
C4 −0.0565 (4) 0.1636 (3) 0.5147 (4) 0.0649 (10)
C5 0.0106 (3) 0.1700 (3) 0.4506 (3) 0.0574 (9)
H5 0.0242 0.1143 0.4144 0.069*
C6 0.0574 (3) 0.2624 (2) 0.4416 (3) 0.0474 (8)
C7 0.1298 (3) 0.2699 (2) 0.3734 (3) 0.0476 (8)
C8 0.1640 (3) 0.3603 (3) 0.3419 (3) 0.0511 (8)
H8A 0.0937 0.3983 0.3019 0.061*
H8B 0.2077 0.3967 0.4101 0.061*
C9 0.2304 (3) 0.3596 (3) 0.2760 (3) 0.0515 (9)
C10 0.2656 (3) 0.4562 (3) 0.2375 (3) 0.0624 (10)
F1 −0.0500 (3) 0.4121 (2) 0.6129 (3) 0.1000 (11)
F2 −0.1027 (3) 0.0740 (2) 0.5224 (3) 0.1010 (11)
F3 0.2245 (3) 0.4627 (2) 0.1272 (2) 0.0913 (9)
F4 0.3807 (2) 0.4629 (2) 0.2695 (3) 0.0989 (10)
F5 0.2306 (3) 0.5370 (2) 0.2748 (3) 0.1110 (13)
O1 0.1598 (2) 0.18650 (19) 0.3425 (2) 0.0671 (8)
O2 0.2645 (2) 0.2827 (2) 0.2411 (2) 0.0666 (8)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.065 (2) 0.051 (2) 0.066 (2) 0.0018 (15) 0.0410 (17) −0.0022 (16)
C2 0.072 (2) 0.063 (2) 0.070 (2) 0.0110 (18) 0.0473 (19) −0.0002 (17)
C3 0.070 (2) 0.083 (3) 0.073 (2) 0.007 (2) 0.050 (2) 0.012 (2)
C4 0.072 (2) 0.059 (2) 0.081 (2) −0.0095 (18) 0.048 (2) 0.0108 (19)
C5 0.064 (2) 0.050 (2) 0.069 (2) −0.0058 (15) 0.0380 (17) −0.0011 (15)
C6 0.0508 (18) 0.0460 (18) 0.0561 (18) 0.0013 (13) 0.0323 (15) 0.0034 (14)
C7 0.0473 (16) 0.0457 (18) 0.0588 (19) 0.0002 (13) 0.0306 (15) −0.0036 (14)
C8 0.0564 (18) 0.0448 (19) 0.065 (2) 0.0001 (14) 0.0373 (16) −0.0009 (15)
C9 0.0535 (18) 0.048 (2) 0.063 (2) −0.0011 (14) 0.0335 (16) −0.0016 (15)
C10 0.069 (2) 0.058 (2) 0.079 (3) −0.0047 (17) 0.049 (2) −0.0035 (18)
F1 0.146 (3) 0.0803 (18) 0.121 (2) 0.0129 (16) 0.105 (2) −0.0090 (15)
F2 0.125 (2) 0.0773 (18) 0.138 (3) −0.0305 (16) 0.092 (2) 0.0011 (16)
F3 0.112 (2) 0.0859 (19) 0.0818 (18) −0.0116 (15) 0.0440 (15) 0.0191 (13)
F4 0.0676 (15) 0.096 (2) 0.139 (3) −0.0226 (13) 0.0460 (15) 0.0177 (17)
F5 0.169 (3) 0.0515 (16) 0.173 (3) −0.0089 (16) 0.133 (3) −0.0034 (16)
O1 0.0897 (19) 0.0399 (14) 0.102 (2) 0.0042 (12) 0.0704 (16) −0.0031 (12)
O2 0.0793 (17) 0.0555 (16) 0.0924 (19) 0.0030 (12) 0.0633 (15) −0.0029 (13)

Geometric parameters (Å, º)

C1—C2 1.379 (5) C6—C7 1.479 (5)
C1—C6 1.383 (5) C7—O1 1.290 (4)
C1—H1 0.9300 C7—C8 1.396 (5)
C2—F1 1.344 (5) C8—C9 1.389 (5)
C2—C3 1.374 (6) C8—H8A 0.9700
C3—C4 1.367 (6) C8—H8B 0.9700
C3—H3 0.9300 C9—O2 1.262 (4)
C4—F2 1.353 (5) C9—C10 1.512 (5)
C4—C5 1.381 (5) C10—F3 1.316 (5)
C5—C6 1.393 (5) C10—F5 1.327 (5)
C5—H5 0.9300 C10—F4 1.328 (4)
C2—C1—C6 118.8 (3) O1—C7—C8 120.7 (3)
C2—C1—H1 120.6 O1—C7—C6 115.8 (3)
C6—C1—H1 120.6 C8—C7—C6 123.5 (3)
F1—C2—C3 118.5 (3) C9—C8—C7 119.2 (3)
F1—C2—C1 118.4 (4) C9—C8—H8A 107.5
C3—C2—C1 123.1 (4) C7—C8—H8A 107.5
C4—C3—C2 116.4 (3) C9—C8—H8B 107.5
C4—C3—H3 121.8 C7—C8—H8B 107.5
C2—C3—H3 121.8 H8A—C8—H8B 107.0
F2—C4—C3 118.5 (3) O2—C9—C8 125.5 (3)
F2—C4—C5 117.9 (4) O2—C9—C10 114.0 (3)
C3—C4—C5 123.7 (4) C8—C9—C10 120.5 (3)
C4—C5—C6 118.0 (4) F3—C10—F5 106.9 (4)
C4—C5—H5 121.0 F3—C10—F4 104.9 (3)
C6—C5—H5 121.0 F5—C10—F4 107.1 (3)
C1—C6—C5 120.0 (3) F3—C10—C9 111.8 (3)
C1—C6—C7 121.5 (3) F5—C10—C9 114.1 (3)
C5—C6—C7 118.4 (3) F4—C10—C9 111.5 (3)
C6—C1—C2—F1 −179.9 (3) C5—C6—C7—O1 −11.0 (5)
C6—C1—C2—C3 0.8 (6) C1—C6—C7—C8 −12.7 (5)
F1—C2—C3—C4 −179.9 (4) C5—C6—C7—C8 168.3 (3)
C1—C2—C3—C4 −0.6 (6) O1—C7—C8—C9 0.4 (5)
C2—C3—C4—F2 −179.5 (4) C6—C7—C8—C9 −178.9 (3)
C2—C3—C4—C5 0.4 (6) C7—C8—C9—O2 −0.3 (6)
F2—C4—C5—C6 179.4 (3) C7—C8—C9—C10 178.1 (3)
C3—C4—C5—C6 −0.5 (6) O2—C9—C10—F3 59.0 (4)
C2—C1—C6—C5 −0.9 (5) C8—C9—C10—F3 −119.5 (4)
C2—C1—C6—C7 −179.9 (3) O2—C9—C10—F5 −179.5 (3)
C4—C5—C6—C1 0.7 (5) C8—C9—C10—F5 1.9 (5)
C4—C5—C6—C7 179.8 (3) O2—C9—C10—F4 −58.1 (4)
C1—C6—C7—O1 168.0 (3) C8—C9—C10—F4 123.4 (4)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
C3—H3···O2i 0.93 2.53 3.462 (5) 177

Symmetry code: (i) x−1/2, −y+1/2, z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB7151).

References

  1. Bruker (2009). APEX2, SAINT-Plus and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Macrae, C. F., Bruno, I. J., Chisholm, J. A., Edgington, P. R., McCabe, P., Pidcock, E., Rodriguez-Monge, L., Taylor, R., van de Streek, J. & Wood, P. A. (2008). J. Appl. Cryst. 41, 466–470.
  3. Manoj Kumar, K. E., Sreenivasa, S., Shivaraja, G. & Madhu Chakrapani Rao, T. (2013). Molbank, M803, 10.3390/M803.
  4. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813028535/hb7151sup1.cif

e-69-o1705-sup1.cif (18.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813028535/hb7151Isup2.hkl

e-69-o1705-Isup2.hkl (79.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813028535/hb7151Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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