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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2013 Aug 23;69(Pt 9):o1467. doi: 10.1107/S1600536813023210

Fluazinam

Youngeun Jeon a, Jineun Kim a,*, Sangjin Lee a, Tae Ho Kim a,*
PMCID: PMC3884378  PMID: 24427089

Abstract

In the asymmetric unit of the title compound {systematic name: 3-chloro-N-[3-chloro-5-(tri­fluoro­meth­yl)pyridin-2-yl]-2,6-di­nitro-4-(tri­fluoro­methyl)­aniline}, C13H4Cl2F6N4O4, which is the fungicide fluazinam, the dihedral angle between the pyridine and benzene ring planes is 42.20 (4)°. In the crystal, pairs of N—H⋯F hydrogen bonds link the mol­ecules into inversion dimers which are linked by C—Cl⋯π [Cl⋯ring centroid = 3.3618 (4) A °] and N—O⋯π [O⋯ring centroid = 3.1885 (16) Å] inter­actions into chains along [100]. In addition, short Cl⋯Cl, O⋯Cl, and F⋯F contacts [3.4676 (7), 3.2371 (13) and 2.7910 (15) Å] are present which connect the chains, yielding a three-dimensional network.

Related literature  

For information on the toxicity and fungicidal properties of the title compound, see: Yoshida & Yukimoto (1993); Draper et al. (2003). For a related structure, see: McCullough et al. (1972).graphic file with name e-69-o1467-scheme1.jpg

Experimental  

Crystal data  

  • C13H4Cl2F6N4O4

  • M r = 465.10

  • Triclinic, Inline graphic

  • a = 8.9546 (1) Å

  • b = 9.0724 (1) Å

  • c = 10.6818 (2) Å

  • α = 79.556 (1)°

  • β = 75.420 (1)°

  • γ = 83.451 (1)°

  • V = 823.79 (2) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.49 mm−1

  • T = 173 K

  • 0.30 × 0.18 × 0.15 mm

Data collection  

  • Bruker APEXII CCD detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2006) T min = 0.867, T max = 0.930

  • 15193 measured reflections

  • 4096 independent reflections

  • 3662 reflections with I > 2σ(I)

  • R int = 0.022

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.032

  • wR(F 2) = 0.085

  • S = 1.04

  • 4096 reflections

  • 262 parameters

  • H-atom parameters constrained

  • Δρmax = 0.47 e Å−3

  • Δρmin = −0.45 e Å−3

Data collection: APEX2 (Bruker, 2006); cell refinement: SAINT (Bruker, 2006); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and DIAMOND (Brandenburg, 1998); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813023210/kj2230sup1.cif

e-69-o1467-sup1.cif (24.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813023210/kj2230Isup2.hkl

e-69-o1467-Isup2.hkl (200.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813023210/kj2230Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N3—H3⋯F3i 0.88 2.52 3.0690 (15) 121

Symmetry code: (i) Inline graphic.

Acknowledgments

This research was supported by the Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education, Science and Technology (No. 2012R1A1B3003337).

supplementary crystallographic information

1. Comment

The title compound fluazinam, C13H4Cl2F6N4O4, is a broad spectrum contact fungicide that can be applied as a foliar spray or soil treatment (Yoshida et al., 1993; Draper et al., 2003) and its crystal structure is reported herein. In this compound (Fig. 1), the dihedral angle between the pyridyl ring and the phenyl ring is 42.20 (4)°. All bond lengths and bond angles are normal and comparable to those observed in the crystal structures of a similar compound (McCullough et al., 1972). In the crystal structure (Fig. 2), an intermolecular N—H···F hydrogen bond is observed (Table 1), giving a dimer structure. In this structure there are both a C3—Cl1···π interaction with the pyridyl ring [Cl1···Cg1ii = 3.3618 (4) Å] and a N1—O1···π interaction with the phenyl ring [O1···Cg2ii = 3.1885 (16) Å]. In addition, short Cl···Cl, O···Cl, and F···F contacts [Cl2···Cl2iii, 3.4676 (7) Å, O3···Cl1iv, 3.2371 (13) Å, and F3···F6v, 2.7910 (15) Å] are present [for symmetry codes: (ii), -x+1, -y+1, -z+1, (iii), -x+1, -y+1, -z+2, (iv), x, y - 1, z, and (v), x + 1, y + 1, z + 1]. A three-dimensional network is formed by the hydrogen bond and these interactions.

2. Experimental

The title compound was purchased from the Dr. Ehrenstorfer GmbH Company. Slow evaporation of a solution in CH2Cl2 gave single crystals suitable for X-ray analysis.

3. Refinement

All H-atoms were positioned geometrically and refined using a riding model with d(N—H) = 0.88 Å, Uiso = 1.2Ueq(C) for amine and d(C—H) = 0.95 Å, Uiso = 1.2Ueq(C) for Csp2—H.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound. Displacement ellipsoids are drawn at the 50% probability level. H atoms are shown as small spheres of arbitrary radius.

Fig. 2.

Fig. 2.

Crystal packing of the title compound with N—H···F hydrogen bonds and weak intermolecular Cl···Cl and F···F interactions shown as dashed lines.

Crystal data

C13H4Cl2F6N4O4 Z = 2
Mr = 465.10 F(000) = 460
Triclinic, P1 Dx = 1.875 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 8.9546 (1) Å Cell parameters from 8261 reflections
b = 9.0724 (1) Å θ = 2.4–28.3°
c = 10.6818 (2) Å µ = 0.49 mm1
α = 79.556 (1)° T = 173 K
β = 75.420 (1)° Block, yellow
γ = 83.451 (1)° 0.30 × 0.18 × 0.15 mm
V = 823.79 (2) Å3

Data collection

Bruker APEXII CCD detector diffractometer 4096 independent reflections
Radiation source: fine-focus sealed tube 3662 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.022
φ and ω scans θmax = 28.4°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2006) h = −11→11
Tmin = 0.867, Tmax = 0.930 k = −12→10
15193 measured reflections l = −14→14

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.085 H-atom parameters constrained
S = 1.04 w = 1/[σ2(Fo2) + (0.0402P)2 + 0.3959P] where P = (Fo2 + 2Fc2)/3
4096 reflections (Δ/σ)max < 0.001
262 parameters Δρmax = 0.47 e Å3
0 restraints Δρmin = −0.45 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl1 0.83432 (5) 0.72367 (4) 0.34806 (4) 0.03069 (10)
Cl2 0.43809 (5) 0.32745 (5) 0.99480 (4) 0.03760 (11)
F1 1.06852 (11) 0.34123 (11) 0.15585 (9) 0.0342 (2)
F2 0.90981 (11) 0.53398 (12) 0.12664 (9) 0.0369 (2)
F3 1.11164 (11) 0.55470 (11) 0.19484 (10) 0.0357 (2)
F4 0.25749 (13) −0.25110 (12) 0.84106 (12) 0.0484 (3)
F5 0.07528 (12) −0.07681 (13) 0.86228 (14) 0.0542 (3)
F6 0.17049 (16) −0.17401 (14) 1.02625 (11) 0.0572 (3)
N1 0.63148 (15) 0.61200 (13) 0.60382 (12) 0.0257 (3)
N2 0.82927 (13) 0.07922 (13) 0.58834 (12) 0.0239 (2)
N3 0.62868 (14) 0.31709 (14) 0.72658 (11) 0.0234 (2)
H3 0.6329 0.3764 0.7821 0.028*
N4 0.52522 (14) 0.10739 (14) 0.69279 (12) 0.0240 (2)
O1 0.51649 (16) 0.65800 (18) 0.56501 (17) 0.0595 (4)
O2 0.6693 (2) 0.65407 (19) 0.68990 (16) 0.0653 (5)
O3 0.83309 (13) −0.01445 (12) 0.51781 (11) 0.0321 (2)
O4 0.84483 (13) 0.05111 (13) 0.70083 (11) 0.0321 (2)
C1 1.00024 (17) 0.46373 (17) 0.20469 (14) 0.0257 (3)
C2 0.90782 (15) 0.42479 (15) 0.34387 (13) 0.0210 (3)
C3 0.82543 (16) 0.53636 (15) 0.41309 (13) 0.0210 (3)
C4 0.73336 (15) 0.49449 (15) 0.53729 (13) 0.0209 (3)
C5 0.72421 (15) 0.34551 (15) 0.60148 (13) 0.0197 (3)
C6 0.81363 (15) 0.23826 (15) 0.53006 (13) 0.0204 (3)
C7 0.90021 (16) 0.27574 (15) 0.40317 (13) 0.0215 (3)
H7 0.9548 0.1987 0.3564 0.026*
C8 0.52749 (15) 0.20410 (15) 0.77180 (13) 0.0208 (3)
C9 0.42873 (16) 0.19730 (16) 0.89770 (14) 0.0238 (3)
C10 0.32506 (17) 0.08814 (17) 0.94103 (14) 0.0267 (3)
H10 0.2564 0.0818 1.0253 0.032*
C11 0.32343 (17) −0.01298 (16) 0.85797 (15) 0.0257 (3)
C12 0.42492 (17) 0.00019 (16) 0.73578 (15) 0.0261 (3)
H12 0.4234 −0.0698 0.6800 0.031*
C13 0.20746 (19) −0.12907 (18) 0.89734 (17) 0.0332 (3)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl1 0.0402 (2) 0.01712 (16) 0.03235 (19) −0.00298 (13) −0.00704 (15) 0.00063 (13)
Cl2 0.0392 (2) 0.0455 (2) 0.02904 (19) −0.01359 (17) 0.00518 (15) −0.02051 (17)
F1 0.0373 (5) 0.0320 (5) 0.0270 (4) −0.0033 (4) 0.0067 (4) −0.0076 (4)
F2 0.0418 (5) 0.0452 (6) 0.0211 (4) 0.0003 (4) −0.0090 (4) 0.0013 (4)
F3 0.0328 (5) 0.0331 (5) 0.0372 (5) −0.0146 (4) −0.0007 (4) 0.0018 (4)
F4 0.0441 (6) 0.0303 (5) 0.0704 (8) −0.0134 (4) −0.0029 (5) −0.0154 (5)
F5 0.0303 (5) 0.0468 (7) 0.0869 (9) −0.0104 (5) −0.0176 (6) −0.0038 (6)
F6 0.0738 (8) 0.0510 (7) 0.0409 (6) −0.0357 (6) 0.0012 (6) 0.0069 (5)
N1 0.0302 (6) 0.0191 (6) 0.0264 (6) 0.0011 (5) −0.0048 (5) −0.0047 (5)
N2 0.0218 (6) 0.0194 (6) 0.0264 (6) −0.0010 (4) 0.0003 (4) −0.0018 (5)
N3 0.0264 (6) 0.0231 (6) 0.0203 (5) −0.0068 (4) 0.0004 (4) −0.0074 (5)
N4 0.0246 (6) 0.0230 (6) 0.0237 (6) −0.0033 (4) −0.0018 (4) −0.0067 (5)
O1 0.0400 (7) 0.0658 (10) 0.0874 (11) 0.0247 (7) −0.0296 (8) −0.0471 (9)
O2 0.0887 (12) 0.0629 (10) 0.0628 (10) 0.0380 (9) −0.0454 (9) −0.0464 (8)
O3 0.0366 (6) 0.0195 (5) 0.0370 (6) −0.0018 (4) 0.0002 (5) −0.0092 (4)
O4 0.0354 (6) 0.0287 (6) 0.0283 (6) 0.0002 (4) −0.0075 (4) 0.0039 (4)
C1 0.0263 (7) 0.0261 (7) 0.0224 (7) −0.0049 (5) −0.0024 (5) −0.0013 (5)
C2 0.0211 (6) 0.0221 (6) 0.0195 (6) −0.0036 (5) −0.0044 (5) −0.0021 (5)
C3 0.0245 (6) 0.0168 (6) 0.0227 (6) −0.0032 (5) −0.0081 (5) −0.0009 (5)
C4 0.0232 (6) 0.0184 (6) 0.0223 (6) −0.0007 (5) −0.0057 (5) −0.0064 (5)
C5 0.0199 (6) 0.0205 (6) 0.0191 (6) −0.0034 (5) −0.0040 (5) −0.0044 (5)
C6 0.0213 (6) 0.0175 (6) 0.0218 (6) −0.0019 (5) −0.0042 (5) −0.0025 (5)
C7 0.0225 (6) 0.0199 (6) 0.0218 (6) −0.0011 (5) −0.0032 (5) −0.0052 (5)
C8 0.0205 (6) 0.0200 (6) 0.0209 (6) −0.0011 (5) −0.0033 (5) −0.0031 (5)
C9 0.0254 (7) 0.0250 (7) 0.0209 (6) −0.0016 (5) −0.0027 (5) −0.0072 (5)
C10 0.0248 (7) 0.0299 (8) 0.0220 (7) −0.0044 (6) 0.0000 (5) −0.0020 (6)
C11 0.0246 (7) 0.0215 (7) 0.0296 (7) −0.0035 (5) −0.0054 (5) −0.0005 (6)
C12 0.0268 (7) 0.0219 (7) 0.0298 (7) −0.0030 (5) −0.0046 (6) −0.0070 (6)
C13 0.0321 (8) 0.0272 (8) 0.0377 (8) −0.0090 (6) −0.0032 (6) −0.0014 (6)

Geometric parameters (Å, º)

Cl1—C3 1.7180 (13) N4—C8 1.3280 (18)
Cl2—C9 1.7283 (14) N4—C12 1.3391 (18)
F1—C1 1.3326 (17) C1—C2 1.5090 (19)
F2—C1 1.3366 (17) C2—C7 1.3868 (19)
F3—C1 1.3382 (17) C2—C3 1.3936 (19)
F4—C13 1.334 (2) C3—C4 1.3864 (19)
F5—C13 1.340 (2) C4—C5 1.4017 (19)
F6—C13 1.330 (2) C5—C6 1.3978 (18)
N1—O2 1.1911 (18) C6—C7 1.3849 (18)
N1—O1 1.2084 (18) C7—H7 0.9500
N1—C4 1.4834 (17) C8—C9 1.4065 (19)
N2—O4 1.2220 (16) C9—C10 1.373 (2)
N2—O3 1.2263 (16) C10—C11 1.391 (2)
N2—C6 1.4701 (17) C10—H10 0.9500
N3—C8 1.3846 (17) C11—C12 1.384 (2)
N3—C5 1.3906 (17) C11—C13 1.495 (2)
N3—H3 0.8800 C12—H12 0.9500
O2—N1—O1 125.30 (14) C7—C6—C5 122.46 (12)
O2—N1—C4 117.99 (13) C7—C6—N2 115.65 (12)
O1—N1—C4 116.71 (12) C5—C6—N2 121.78 (12)
O4—N2—O3 125.24 (12) C6—C7—C2 120.52 (13)
O4—N2—C6 117.51 (12) C6—C7—H7 119.7
O3—N2—C6 117.15 (12) C2—C7—H7 119.7
C8—N3—C5 126.00 (12) N4—C8—N3 118.35 (12)
C8—N3—H3 117.0 N4—C8—C9 122.28 (13)
C5—N3—H3 117.0 N3—C8—C9 119.35 (12)
C8—N4—C12 118.20 (12) C10—C9—C8 119.38 (13)
F1—C1—F2 107.50 (12) C10—C9—Cl2 120.99 (11)
F1—C1—F3 107.14 (12) C8—C9—Cl2 119.63 (11)
F2—C1—F3 106.99 (12) C9—C10—C11 118.07 (13)
F1—C1—C2 111.51 (12) C9—C10—H10 121.0
F2—C1—C2 111.11 (12) C11—C10—H10 121.0
F3—C1—C2 112.33 (12) C12—C11—C10 119.23 (13)
C7—C2—C3 119.09 (12) C12—C11—C13 120.38 (14)
C7—C2—C1 119.92 (12) C10—C11—C13 120.30 (14)
C3—C2—C1 120.96 (12) N4—C12—C11 122.83 (14)
C4—C3—C2 118.91 (12) N4—C12—H12 118.6
C4—C3—Cl1 119.39 (11) C11—C12—H12 118.6
C2—C3—Cl1 121.70 (10) F6—C13—F4 107.38 (14)
C3—C4—C5 123.74 (12) F6—C13—F5 106.72 (14)
C3—C4—N1 118.60 (12) F4—C13—F5 106.11 (14)
C5—C4—N1 117.56 (12) F6—C13—C11 112.20 (14)
N3—C5—C6 126.22 (12) F4—C13—C11 112.41 (13)
N3—C5—C4 118.65 (12) F5—C13—C11 111.63 (13)
C6—C5—C4 115.13 (12)
F1—C1—C2—C7 −1.24 (18) O3—N2—C6—C7 −41.24 (17)
F2—C1—C2—C7 118.67 (14) O4—N2—C6—C5 −40.98 (18)
F3—C1—C2—C7 −121.52 (14) O3—N2—C6—C5 142.43 (13)
F1—C1—C2—C3 −179.22 (12) C5—C6—C7—C2 3.5 (2)
F2—C1—C2—C3 −59.31 (17) N2—C6—C7—C2 −172.80 (12)
F3—C1—C2—C3 60.50 (17) C3—C2—C7—C6 −0.9 (2)
C7—C2—C3—C4 −2.56 (19) C1—C2—C7—C6 −178.88 (12)
C1—C2—C3—C4 175.44 (12) C12—N4—C8—N3 −178.61 (13)
C7—C2—C3—Cl1 177.84 (10) C12—N4—C8—C9 −0.1 (2)
C1—C2—C3—Cl1 −4.16 (18) C5—N3—C8—N4 3.9 (2)
C2—C3—C4—C5 3.7 (2) C5—N3—C8—C9 −174.67 (13)
Cl1—C3—C4—C5 −176.73 (10) N4—C8—C9—C10 −0.5 (2)
C2—C3—C4—N1 −172.68 (12) N3—C8—C9—C10 178.00 (13)
Cl1—C3—C4—N1 6.93 (17) N4—C8—C9—Cl2 −179.84 (11)
O2—N1—C4—C3 −104.70 (18) N3—C8—C9—Cl2 −1.30 (19)
O1—N1—C4—C3 74.84 (19) C8—C9—C10—C11 0.6 (2)
O2—N1—C4—C5 78.73 (19) Cl2—C9—C10—C11 179.93 (11)
O1—N1—C4—C5 −101.72 (17) C9—C10—C11—C12 −0.2 (2)
C8—N3—C5—C6 −43.9 (2) C9—C10—C11—C13 −176.82 (14)
C8—N3—C5—C4 135.41 (14) C8—N4—C12—C11 0.5 (2)
C3—C4—C5—N3 179.48 (12) C10—C11—C12—N4 −0.4 (2)
N1—C4—C5—N3 −4.14 (18) C13—C11—C12—N4 176.21 (14)
C3—C4—C5—C6 −1.2 (2) C12—C11—C13—F6 151.47 (15)
N1—C4—C5—C6 175.22 (12) C10—C11—C13—F6 −31.9 (2)
N3—C5—C6—C7 176.86 (13) C12—C11—C13—F4 30.3 (2)
C4—C5—C6—C7 −2.45 (19) C10—C11—C13—F4 −153.10 (14)
N3—C5—C6—N2 −7.1 (2) C12—C11—C13—F5 −88.78 (18)
C4—C5—C6—N2 173.63 (12) C10—C11—C13—F5 87.80 (19)
O4—N2—C6—C7 135.34 (13)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N3—H3···F3i 0.88 2.52 3.0690 (15) 121

Symmetry code: (i) −x+2, −y+1, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: KJ2230).

References

  1. Brandenburg, K. (1998). DIAMOND Crystal Impact GbR, Bonn, Germany.
  2. Bruker (2006). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Draper, A., Cullinan, P., Campbell, C., Jones, M. & Taylor, A. N. (2003). Occup. Environ. Med. 60, 76–77. [DOI] [PMC free article] [PubMed]
  4. McCullough, J. D., Paul, I. C. & Curtin, D. Y. (1972). J. Am. Chem. Soc. 94, 883–889.
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  6. Yoshida, M. & Yukimoto, M. (1993). Pestic. Biochem. Physiol. 47, 171–177.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813023210/kj2230sup1.cif

e-69-o1467-sup1.cif (24.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813023210/kj2230Isup2.hkl

e-69-o1467-Isup2.hkl (200.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813023210/kj2230Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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