Skip to main content
Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2013 Aug 10;69(Pt 9):o1401–o1402. doi: 10.1107/S1600536813021533

Methyl (2Z)-((2Z)-2-{(2E)-[1-(4-methyl­phen­yl)ethyl­idene]hydrazinyl­idene}-4-oxo-3-phenyl-1,3-thia­zolidin-5-yl­idene)ethano­ate

Joel T Mague a, Mehmet Akkurt b, Shaaban K Mohamed c,d, Alaa A Hassan d, Mustafa R Albayati e,*
PMCID: PMC3884445  PMID: 24427040

Abstract

The asymmetric unit of the title compound, C21H19N3O3S, contains two independent mol­ecules. In one mol­ecule, the 1,3-thia­zolidine ring forms dihedral angles of 86.19 (8) and 8.37 (8)° with the phenyl and benzene rings, respectively. The corresponding dihedral angles in the other mol­ecule are 69.60 (7) and 14.08 (7)°. The dihedral angle between the phenyl and benzene rings is 84.70 (8)° in one mol­ecule and 69.62 (8)° in the other. In the crystal, mol­ecules pack in layers approximately parallel to (10-2). There are weak C—H⋯O hydrogen bonds within these layers. Further weak C—H⋯O hydrogen bonding occurs between the layers to form a three-dimensional network. A weak C—H⋯π inter­action is also observed.

Related literature  

For the synthesis and general applications of thia­zolidines, see: Pandey et al. (2011); Barreca et al. (2002); Botti et al. (1996); Pfahl et al. (2003); Sayyed et al. (2006); Sharma et al. (2006); Babaoğlu et al. (2003); Çapan et al. (1999). For standard bond-length data, see: Allen et al. (1987).graphic file with name e-69-o1401-scheme1.jpg

Experimental  

Crystal data  

  • C21H19N3O3S

  • M r = 393.46

  • Monoclinic, Inline graphic

  • a = 8.3713 (12) Å

  • b = 21.568 (3) Å

  • c = 21.591 (3) Å

  • β = 96.411 (2)°

  • V = 3873.9 (9) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 0.19 mm−1

  • T = 150 K

  • 0.19 × 0.19 × 0.11 mm

Data collection  

  • Bruker SMART APEX CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2013) T min = 0.81, T max = 0.98

  • 69242 measured reflections

  • 9850 independent reflections

  • 7890 reflections with I > 2σ(I)

  • R int = 0.057

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.044

  • wR(F 2) = 0.112

  • S = 1.05

  • 9850 reflections

  • 511 parameters

  • H-atom parameters constrained

  • Δρmax = 0.34 e Å−3

  • Δρmin = −0.34 e Å−3

Data collection: APEX2 (Bruker, 2013); cell refinement: SAINT (Bruker, 2013); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and DIAMOND (Brandenburg & Putz, 2012).; software used to prepare material for publication: WinGX (Farrugia, 2012) and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813021533/lh5636sup1.cif

e-69-o1401-sup1.cif (44.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813021533/lh5636Isup2.hkl

e-69-o1401-Isup2.hkl (539.4KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813021533/lh5636Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg is the centroid of the C36–C41 ring.

D—H⋯A D—H H⋯A DA D—H⋯A
C4—H4⋯O6i 0.95 2.56 3.4802 (19) 163
C6—H6B⋯O4i 0.98 2.52 3.465 (2) 163
C8—H8⋯O2ii 0.95 2.56 3.359 (2) 142
C12—H12⋯O4 0.95 2.43 3.302 (2) 152
C27—H27B⋯O1i 0.98 2.45 3.410 (2) 166
C30—H30⋯O5iii 0.95 2.44 3.331 (2) 157
C32—H32⋯O1iv 0.95 2.57 3.340 (2) 139
C33—H33⋯Cg v 0.95 2.58 3.4951 (19) 162

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic.

Acknowledgments

The use of X-ray crystallographic facilities at Tulane University, USA, is gratefully acknowledged, We thank Manchester Metropolitan University, Erciyes University and Minia University for supporting this study.

supplementary crystallographic information

1. Comment

Heterocyclic compounds such as thiazolidines have demonstrated widespread applications as pharmaceuticals (Pandey et al., 2011; Barreca et al., 2002) and materials (Botti et al., 1996). Thiazolidinone derivatives exhibit anticancer properties (Pfahl et al., 2003) as well as antibacterial (Sayyed et al., 2006), antimycobacterial (Babaoğlu et al., 2003), antimicrobial (Sharma et al., 2006) and antifungal (Çapan et al., 1999) activities. Therefore, we have synthesized the title compound (I) and determined its crystal structure.

The asymmetric unit of (I) is shown in Fig. 1. In one molecule, the 1,3-thiazolidine ring (S1/N1/C1–C3) forms dihedral angles of 86.19 (8) and 8.37 (8) °, respectively, with the phenyl ring (C7–C12) and the benzene ring (C15–C20). In the other molecule the corresponding angles between (S2/N4/C22-C24) are 69.60 (7) (C28-C33) and 14.08 (7)° (C36-C41), respectively. The dihedral angle between the phenyl and benzene rings is 84.70 (8)° (C7-C12 and C15-C20) and 69.62 (8)° (C28-C33 and C26-C41). The differences in the dihedral angles may be due to the packing effects of neighbouring molecules. The bond lengths (Allen et al., 1987) and angles in each molecule are normal.

In the crystal, molecules are arranged in layers approximately parallel to (102) connected by weak C—H···O hydrogen bonds (Table 1, Fig. 2). Additional weak C—H···O hydrogen bonds occur between theses layers (Table 1, Fig. 2) forming a three-dimensional network. A weak intermolecular C—H···π interaction is also observed (Table 1).

2. Experimental

A mixture of 283 mg (1 mmol) (2E)-2-[1-(4-methylphenyl)ethylidene]-N-phenylhydrazinecarbothioamide and 142 mg (1 mmol) of dimethyl but-2-ynedioate in 50 ml methanol was refluxed for three hours. The excess solvent was evaporated under vacuum and the residual solid product was collected and recrystallized from ethanol to afford a clear yellow blocks (M.p. 527 – 529 K) suitable for X-ray diffraction.

3. Refinement

H atoms were placed in geometrically idealized positions and constrained to ride on their parent atoms with C—H = 0.95 (aromatic H) and 0.98 Å (methyl H), with Uiso(H) = 1.2 Uiso(C) for aromatic H atoms and Uiso(H) = 1.5 Uiso(C) for methyl H atoms.

Figures

Fig. 1.

Fig. 1.

The asymmetric unit of (I) showing a weak C—H···O hydrogen bond (dashed line) between the independent molecules. Displacement ellipsoids are at the 30% probabilty level.

Fig. 2.

Fig. 2.

Part of the crystal structure viewed approximately along the b axis with weak C—H···O hydrogen bonds shown as dashed lines.

Fig. 3.

Fig. 3.

A view along the b axis showing weak C—H···π interactions as dashed lines.

Crystal data

C21H19N3O3S F(000) = 1648
Mr = 393.46 Dx = 1.349 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 9179 reflections
a = 8.3713 (12) Å θ = 2.5–28.6°
b = 21.568 (3) Å µ = 0.19 mm1
c = 21.591 (3) Å T = 150 K
β = 96.411 (2)° Block, clear yellow
V = 3873.9 (9) Å3 0.19 × 0.19 × 0.11 mm
Z = 8

Data collection

Bruker SMART APEX CCD diffractometer 9850 independent reflections
Radiation source: fine-focus sealed tube 7890 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.057
Detector resolution: 8.3660 pixels mm-1 θmax = 28.6°, θmin = 1.9°
φ and ω scans h = −10→11
Absorption correction: multi-scan (SADABS; Bruker, 2013) k = −28→28
Tmin = 0.81, Tmax = 0.98 l = −28→28
69242 measured reflections

Refinement

Refinement on F2 0 restraints
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044 H-atom parameters constrained
wR(F2) = 0.112 W = 1/[Σ2(FO2) + (0.0511P)2 + 1.054P] WHERE P = (FO2 + 2FC2)/3
S = 1.05 (Δ/σ)max = 0.001
9850 reflections Δρmax = 0.34 e Å3
511 parameters Δρmin = −0.34 e Å3

Special details

Experimental. 1H-NMR [δ, p.p.m., CDCl3]: 2.27 (S, 3H, CH3), 2.39 (S, 3H, CH3), 3.88 (S, 3H, OCH3), 6.97 (S, 1H, vinyl - CH), 7.19–7.26 (m, 2H, Ar- H), 7.44–7.47 (m, 3H, Ar - H), 7.51–7.55 (m, 2H, Ar - H), 7.78–7.83 (m, 2H, Ar - H). 13C-NMR [δ, p.p.m., CDCl3]: 15.03 (CH3), 21.42 (CH3), 52.49 (OCH3), 115.98 (vinyl-CH), 126.92, 127.46, 128.90, 129.09, 129.30 (Ar - CH), 132.21, 133.76 (Ar - C), 140.75 (Ar – C– N), 142.05 (CH3 – C=N), 158.15 (thiazole – C.2), 164.9 (cyclic – C=O), 166.59 (ester - CO).
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.59531 (4) 0.00119 (2) 0.42718 (2) 0.0226 (1)
O1 0.79183 (14) 0.14802 (5) 0.50471 (5) 0.0337 (3)
O2 0.74230 (14) −0.08842 (5) 0.50854 (5) 0.0302 (3)
O3 0.93261 (13) −0.06779 (5) 0.58848 (5) 0.0285 (3)
N1 0.60347 (15) 0.12318 (6) 0.42279 (6) 0.0241 (3)
N2 0.42172 (15) 0.07810 (6) 0.34568 (6) 0.0263 (4)
N3 0.36391 (15) 0.01878 (6) 0.32675 (6) 0.0260 (4)
C1 0.52809 (17) 0.07228 (7) 0.39283 (7) 0.0228 (4)
C2 0.71496 (18) 0.10956 (7) 0.47312 (7) 0.0250 (4)
C3 0.72573 (17) 0.04065 (6) 0.48243 (7) 0.0227 (4)
C4 0.82274 (18) 0.01562 (7) 0.52956 (7) 0.0247 (4)
C5 0.82622 (18) −0.05181 (7) 0.53990 (7) 0.0244 (4)
C6 0.9370 (2) −0.13330 (7) 0.60373 (8) 0.0319 (5)
C7 0.55457 (18) 0.18631 (6) 0.40694 (7) 0.0244 (4)
C8 0.4378 (2) 0.21376 (7) 0.43831 (8) 0.0306 (5)
C9 0.3904 (2) 0.27400 (8) 0.42290 (9) 0.0368 (5)
C10 0.4589 (2) 0.30597 (7) 0.37721 (8) 0.0367 (5)
C11 0.5760 (2) 0.27798 (8) 0.34637 (8) 0.0389 (6)
C12 0.6251 (2) 0.21778 (8) 0.36116 (8) 0.0334 (5)
C13 0.25712 (18) 0.01879 (7) 0.27854 (7) 0.0260 (4)
C14 0.1978 (2) 0.07602 (8) 0.24368 (8) 0.0346 (5)
C15 0.19100 (18) −0.04256 (8) 0.25778 (7) 0.0279 (4)
C16 0.2319 (2) −0.09620 (8) 0.29201 (8) 0.0367 (5)
C17 0.1656 (2) −0.15299 (8) 0.27352 (9) 0.0408 (6)
C18 0.0564 (2) −0.15848 (9) 0.22020 (9) 0.0390 (6)
C19 0.0179 (2) −0.10561 (9) 0.18561 (9) 0.0436 (6)
C20 0.0840 (2) −0.04854 (9) 0.20358 (8) 0.0373 (5)
C21 −0.0198 (3) −0.22033 (10) 0.20217 (11) 0.0575 (8)
S2 0.57525 (4) −0.01716 (2) 0.19020 (2) 0.0234 (1)
O4 0.79280 (13) 0.12820 (5) 0.26255 (5) 0.0291 (3)
O5 0.70484 (14) −0.10494 (5) 0.27998 (5) 0.0326 (3)
O6 0.89186 (13) −0.08142 (5) 0.36026 (5) 0.0286 (3)
N4 0.60388 (15) 0.10390 (5) 0.18031 (6) 0.0229 (3)
N5 0.42977 (16) 0.06042 (6) 0.10082 (6) 0.0266 (4)
N6 0.35687 (16) 0.00405 (6) 0.08093 (6) 0.0266 (4)
C22 0.52529 (17) 0.05328 (6) 0.15065 (7) 0.0230 (4)
C23 0.70949 (17) 0.09035 (6) 0.23226 (7) 0.0222 (4)
C24 0.70620 (17) 0.02231 (6) 0.24547 (7) 0.0221 (4)
C25 0.79655 (17) −0.00146 (6) 0.29468 (7) 0.0230 (4)
C26 0.79111 (18) −0.06797 (7) 0.30954 (7) 0.0239 (4)
C27 0.8927 (2) −0.14517 (7) 0.38080 (8) 0.0350 (5)
C28 0.57567 (17) 0.16650 (6) 0.15832 (7) 0.0244 (4)
C29 0.49625 (19) 0.20722 (7) 0.19350 (8) 0.0313 (5)
C30 0.4714 (2) 0.26784 (8) 0.17250 (9) 0.0401 (6)
C31 0.5262 (2) 0.28624 (8) 0.11736 (9) 0.0429 (6)
C32 0.6065 (2) 0.24503 (8) 0.08284 (9) 0.0415 (6)
C33 0.6307 (2) 0.18437 (7) 0.10301 (8) 0.0329 (5)
C34 0.28762 (18) 0.00516 (7) 0.02447 (7) 0.0246 (4)
C35 0.2913 (2) 0.05937 (7) −0.01919 (7) 0.0321 (5)
C36 0.19741 (18) −0.05168 (7) 0.00294 (7) 0.0257 (4)
C37 0.2025 (2) −0.10475 (7) 0.03991 (8) 0.0310 (5)
C38 0.1130 (2) −0.15691 (8) 0.02074 (8) 0.0358 (5)
C39 0.0141 (2) −0.15761 (8) −0.03558 (8) 0.0360 (5)
C40 0.0101 (2) −0.10492 (8) −0.07239 (9) 0.0404 (5)
C41 0.1002 (2) −0.05263 (8) −0.05402 (8) 0.0343 (5)
C42 −0.0846 (3) −0.21374 (10) −0.05661 (11) 0.0567 (8)
H4 0.89000 0.04180 0.55660 0.0300*
H6A 0.83230 −0.14610 0.61550 0.0480*
H6B 1.02020 −0.14080 0.63860 0.0480*
H6C 0.96160 −0.15720 0.56740 0.0480*
H8 0.39080 0.19180 0.46980 0.0370*
H9 0.31010 0.29340 0.44400 0.0440*
H10 0.42570 0.34720 0.36690 0.0440*
H11 0.62300 0.30010 0.31490 0.0470*
H12 0.70590 0.19850 0.34020 0.0400*
H14A 0.24530 0.11280 0.26520 0.0520*
H14B 0.08040 0.07820 0.24180 0.0520*
H14C 0.22890 0.07450 0.20130 0.0520*
H16 0.30630 −0.09370 0.32850 0.0440*
H17 0.19520 −0.18890 0.29760 0.0490*
H19 −0.05520 −0.10840 0.14880 0.0520*
H20 0.05610 −0.01300 0.17870 0.0450*
H21A −0.12960 −0.22130 0.21390 0.0860*
H21B 0.04350 −0.25360 0.22390 0.0860*
H21C −0.02270 −0.22620 0.15700 0.0860*
H25 0.86560 0.02510 0.32060 0.0280*
H27A 0.79620 −0.15330 0.40140 0.0530*
H27B 0.98860 −0.15280 0.41020 0.0530*
H27C 0.89380 −0.17270 0.34480 0.0530*
H29 0.45920 0.19410 0.23140 0.0380*
H30 0.41680 0.29650 0.19610 0.0480*
H31 0.50860 0.32760 0.10310 0.0510*
H32 0.64510 0.25830 0.04530 0.0500*
H33 0.68420 0.15560 0.07920 0.0400*
H35A 0.35810 0.09240 0.00130 0.0480*
H35B 0.18180 0.07490 −0.03020 0.0480*
H35C 0.33650 0.04620 −0.05700 0.0480*
H37 0.26800 −0.10530 0.07880 0.0370*
H38 0.11930 −0.19270 0.04650 0.0430*
H40 −0.05590 −0.10450 −0.11120 0.0480*
H41 0.09570 −0.01730 −0.08040 0.0410*
H42A −0.19850 −0.20230 −0.06310 0.0850*
H42B −0.06860 −0.24610 −0.02470 0.0850*
H42C −0.05080 −0.22930 −0.09580 0.0850*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0235 (2) 0.0238 (2) 0.0199 (2) −0.0006 (1) −0.0002 (1) −0.0011 (1)
O1 0.0348 (6) 0.0278 (6) 0.0350 (6) −0.0002 (5) −0.0117 (5) −0.0044 (5)
O2 0.0365 (6) 0.0277 (5) 0.0250 (5) −0.0039 (4) −0.0030 (5) 0.0016 (4)
O3 0.0288 (6) 0.0262 (5) 0.0286 (6) 0.0011 (4) −0.0055 (4) 0.0035 (4)
N1 0.0253 (6) 0.0225 (6) 0.0230 (6) 0.0015 (5) −0.0033 (5) −0.0004 (5)
N2 0.0260 (7) 0.0280 (6) 0.0239 (6) 0.0021 (5) −0.0021 (5) −0.0034 (5)
N3 0.0259 (7) 0.0287 (6) 0.0224 (6) 0.0013 (5) −0.0022 (5) −0.0040 (5)
C1 0.0225 (7) 0.0253 (7) 0.0203 (7) 0.0018 (5) 0.0012 (5) −0.0021 (5)
C2 0.0244 (7) 0.0257 (7) 0.0241 (7) 0.0016 (5) −0.0005 (6) −0.0020 (6)
C3 0.0209 (7) 0.0244 (7) 0.0229 (7) 0.0003 (5) 0.0031 (6) −0.0014 (5)
C4 0.0227 (7) 0.0268 (7) 0.0240 (7) −0.0003 (5) −0.0006 (6) −0.0012 (6)
C5 0.0217 (7) 0.0288 (7) 0.0228 (7) −0.0004 (5) 0.0024 (6) 0.0006 (6)
C6 0.0347 (9) 0.0277 (8) 0.0318 (8) 0.0031 (6) −0.0025 (7) 0.0054 (6)
C7 0.0268 (8) 0.0212 (7) 0.0235 (7) 0.0003 (5) −0.0048 (6) −0.0017 (5)
C8 0.0328 (9) 0.0275 (7) 0.0320 (8) −0.0003 (6) 0.0056 (7) −0.0009 (6)
C9 0.0357 (9) 0.0275 (8) 0.0477 (10) 0.0042 (6) 0.0068 (8) −0.0027 (7)
C10 0.0419 (10) 0.0241 (7) 0.0417 (10) 0.0013 (7) −0.0053 (8) 0.0029 (7)
C11 0.0494 (11) 0.0340 (9) 0.0335 (9) −0.0030 (7) 0.0052 (8) 0.0083 (7)
C12 0.0386 (9) 0.0335 (8) 0.0288 (8) 0.0021 (7) 0.0063 (7) 0.0011 (6)
C13 0.0202 (7) 0.0371 (8) 0.0203 (7) 0.0019 (6) 0.0012 (6) −0.0025 (6)
C14 0.0290 (9) 0.0438 (9) 0.0292 (8) 0.0007 (7) −0.0052 (7) 0.0053 (7)
C15 0.0202 (7) 0.0394 (8) 0.0237 (7) 0.0007 (6) 0.0009 (6) −0.0057 (6)
C16 0.0290 (9) 0.0410 (9) 0.0373 (9) 0.0027 (7) −0.0090 (7) −0.0070 (7)
C17 0.0321 (9) 0.0367 (9) 0.0505 (11) 0.0038 (7) −0.0087 (8) −0.0081 (8)
C18 0.0266 (9) 0.0456 (10) 0.0437 (10) 0.0008 (7) −0.0006 (7) −0.0190 (8)
C19 0.0362 (10) 0.0593 (12) 0.0323 (9) −0.0035 (8) −0.0091 (8) −0.0150 (8)
C20 0.0338 (9) 0.0501 (10) 0.0260 (8) −0.0007 (7) −0.0061 (7) −0.0025 (7)
C21 0.0447 (12) 0.0523 (12) 0.0720 (15) −0.0036 (9) −0.0093 (11) −0.0260 (11)
S2 0.0273 (2) 0.0195 (2) 0.0226 (2) −0.0013 (1) −0.0010 (1) −0.0012 (1)
O4 0.0307 (6) 0.0212 (5) 0.0330 (6) −0.0013 (4) −0.0072 (5) −0.0031 (4)
O5 0.0379 (7) 0.0259 (5) 0.0317 (6) −0.0070 (5) −0.0066 (5) 0.0031 (4)
O6 0.0309 (6) 0.0226 (5) 0.0301 (6) −0.0011 (4) −0.0060 (5) 0.0046 (4)
N4 0.0250 (6) 0.0187 (5) 0.0240 (6) 0.0015 (4) −0.0021 (5) −0.0007 (4)
N5 0.0292 (7) 0.0230 (6) 0.0261 (6) 0.0001 (5) −0.0032 (5) −0.0021 (5)
N6 0.0297 (7) 0.0224 (6) 0.0257 (6) 0.0007 (5) −0.0054 (5) −0.0019 (5)
C22 0.0227 (7) 0.0213 (6) 0.0244 (7) 0.0007 (5) 0.0005 (6) −0.0026 (5)
C23 0.0218 (7) 0.0207 (6) 0.0237 (7) 0.0016 (5) 0.0012 (5) −0.0020 (5)
C24 0.0227 (7) 0.0197 (6) 0.0242 (7) −0.0003 (5) 0.0042 (6) −0.0025 (5)
C25 0.0231 (7) 0.0222 (7) 0.0232 (7) −0.0019 (5) 0.0009 (6) −0.0016 (5)
C26 0.0244 (7) 0.0238 (7) 0.0231 (7) 0.0000 (5) 0.0016 (6) 0.0024 (5)
C27 0.0426 (10) 0.0242 (7) 0.0352 (9) −0.0027 (6) −0.0092 (7) 0.0092 (6)
C28 0.0225 (7) 0.0197 (6) 0.0292 (8) 0.0011 (5) −0.0048 (6) −0.0001 (5)
C29 0.0295 (8) 0.0274 (7) 0.0354 (9) 0.0036 (6) −0.0032 (7) −0.0042 (6)
C30 0.0388 (10) 0.0264 (8) 0.0513 (11) 0.0094 (7) −0.0116 (8) −0.0097 (7)
C31 0.0444 (11) 0.0224 (8) 0.0560 (12) −0.0003 (7) −0.0201 (9) 0.0070 (7)
C32 0.0421 (10) 0.0363 (9) 0.0437 (10) −0.0055 (7) −0.0057 (8) 0.0135 (8)
C33 0.0345 (9) 0.0301 (8) 0.0338 (9) 0.0013 (6) 0.0021 (7) 0.0037 (6)
C34 0.0225 (7) 0.0256 (7) 0.0245 (7) 0.0048 (5) −0.0021 (6) −0.0016 (5)
C35 0.0388 (9) 0.0296 (8) 0.0265 (8) 0.0016 (6) −0.0020 (7) 0.0011 (6)
C36 0.0250 (7) 0.0260 (7) 0.0245 (7) 0.0047 (5) −0.0042 (6) −0.0041 (6)
C37 0.0357 (9) 0.0292 (8) 0.0262 (8) −0.0001 (6) −0.0049 (7) −0.0027 (6)
C38 0.0444 (10) 0.0290 (8) 0.0332 (9) −0.0025 (7) 0.0015 (7) −0.0020 (7)
C39 0.0358 (9) 0.0330 (8) 0.0379 (9) −0.0004 (7) −0.0014 (7) −0.0134 (7)
C40 0.0418 (10) 0.0393 (9) 0.0352 (9) 0.0051 (7) −0.0168 (8) −0.0120 (7)
C41 0.0404 (10) 0.0305 (8) 0.0286 (8) 0.0068 (7) −0.0105 (7) −0.0020 (6)
C42 0.0638 (14) 0.0453 (11) 0.0589 (14) −0.0164 (10) −0.0026 (11) −0.0202 (10)

Geometric parameters (Å, º)

S1—C1 1.7676 (16) C11—H11 0.9500
S1—C3 1.7460 (15) C12—H12 0.9500
S2—C22 1.7699 (14) C14—H14A 0.9800
S2—C24 1.7488 (15) C14—H14B 0.9800
O1—C2 1.2122 (19) C14—H14C 0.9800
O2—C5 1.2121 (19) C16—H16 0.9500
O3—C5 1.3430 (19) C17—H17 0.9500
O3—C6 1.4503 (19) C19—H19 0.9500
O4—C23 1.2160 (18) C20—H20 0.9500
O5—C26 1.2090 (19) C21—H21B 0.9800
O6—C26 1.3373 (19) C21—H21C 0.9800
O6—C27 1.4445 (19) C21—H21A 0.9800
N1—C7 1.4517 (19) C23—C24 1.4958 (19)
N1—C1 1.390 (2) C24—C25 1.336 (2)
N1—C2 1.383 (2) C25—C26 1.472 (2)
N2—C1 1.282 (2) C28—C29 1.380 (2)
N2—N3 1.4121 (18) C28—C33 1.382 (2)
N3—C13 1.294 (2) C29—C30 1.392 (2)
N4—C22 1.3931 (18) C30—C31 1.381 (3)
N4—C28 1.4419 (17) C31—C32 1.382 (3)
N4—C23 1.380 (2) C32—C33 1.387 (2)
N5—C22 1.276 (2) C34—C35 1.504 (2)
N5—N6 1.4059 (19) C34—C36 1.487 (2)
N6—C34 1.290 (2) C36—C37 1.393 (2)
C2—C3 1.501 (2) C36—C41 1.397 (2)
C3—C4 1.342 (2) C37—C38 1.389 (2)
C4—C5 1.471 (2) C38—C39 1.393 (2)
C7—C12 1.384 (2) C39—C40 1.385 (2)
C7—C8 1.383 (2) C39—C42 1.507 (3)
C8—C9 1.388 (2) C40—C41 1.390 (2)
C9—C10 1.380 (2) C25—H25 0.9500
C10—C11 1.384 (2) C27—H27A 0.9800
C11—C12 1.388 (2) C27—H27B 0.9800
C13—C14 1.501 (2) C27—H27C 0.9800
C13—C15 1.484 (2) C29—H29 0.9500
C15—C16 1.395 (2) C30—H30 0.9500
C15—C20 1.398 (2) C31—H31 0.9500
C16—C17 1.385 (2) C32—H32 0.9500
C17—C18 1.393 (3) C33—H33 0.9500
C18—C21 1.511 (3) C35—H35A 0.9800
C18—C19 1.381 (3) C35—H35B 0.9800
C19—C20 1.387 (3) C35—H35C 0.9800
C4—H4 0.9500 C37—H37 0.9500
C6—H6B 0.9800 C38—H38 0.9500
C6—H6C 0.9800 C40—H40 0.9500
C6—H6A 0.9800 C41—H41 0.9500
C8—H8 0.9500 C42—H42A 0.9800
C9—H9 0.9500 C42—H42B 0.9800
C10—H10 0.9500 C42—H42C 0.9800
C1—S1—C3 90.54 (7) C19—C20—H20 120.00
C22—S2—C24 90.44 (7) C18—C21—H21A 109.00
C5—O3—C6 115.16 (12) C18—C21—H21B 109.00
C26—O6—C27 116.03 (12) C18—C21—H21C 109.00
C2—N1—C7 122.17 (13) H21A—C21—H21B 109.00
C1—N1—C7 122.00 (12) H21A—C21—H21C 110.00
C1—N1—C2 115.45 (13) H21B—C21—H21C 109.00
N3—N2—C1 109.05 (12) S2—C22—N4 112.14 (10)
N2—N3—C13 114.60 (13) S2—C22—N5 127.04 (11)
C22—N4—C23 115.76 (11) N4—C22—N5 120.82 (13)
C23—N4—C28 122.18 (11) O4—C23—N4 124.89 (12)
C22—N4—C28 122.07 (12) O4—C23—C24 125.29 (13)
N6—N5—C22 111.28 (12) N4—C23—C24 109.82 (12)
N5—N6—C34 113.98 (13) S2—C24—C23 111.77 (10)
S1—C1—N2 125.36 (12) S2—C24—C25 127.74 (11)
S1—C1—N1 112.54 (11) C23—C24—C25 120.49 (13)
N1—C1—N2 122.11 (14) C24—C25—C26 121.26 (13)
O1—C2—N1 124.49 (14) O5—C26—O6 125.04 (14)
O1—C2—C3 125.59 (14) O5—C26—C25 123.98 (14)
N1—C2—C3 109.92 (13) O6—C26—C25 110.97 (13)
S1—C3—C2 111.56 (10) N4—C28—C29 119.09 (13)
S1—C3—C4 126.95 (11) N4—C28—C33 119.18 (13)
C2—C3—C4 121.46 (13) C29—C28—C33 121.73 (13)
C3—C4—C5 120.84 (13) C28—C29—C30 118.84 (15)
O2—C5—O3 124.16 (14) C29—C30—C31 119.92 (16)
O2—C5—C4 123.97 (14) C30—C31—C32 120.57 (16)
O3—C5—C4 111.86 (13) C31—C32—C33 120.02 (17)
N1—C7—C12 119.78 (13) C28—C33—C32 118.91 (15)
C8—C7—C12 121.39 (14) N6—C34—C35 124.61 (14)
N1—C7—C8 118.83 (13) N6—C34—C36 116.04 (13)
C7—C8—C9 118.82 (15) C35—C34—C36 119.35 (13)
C8—C9—C10 120.57 (16) C34—C36—C37 121.08 (14)
C9—C10—C11 119.96 (15) C34—C36—C41 120.86 (14)
C10—C11—C12 120.32 (16) C37—C36—C41 118.02 (14)
C7—C12—C11 118.94 (15) C36—C37—C38 120.91 (15)
N3—C13—C14 124.30 (14) C37—C38—C39 121.15 (16)
N3—C13—C15 116.33 (13) C38—C39—C40 117.78 (16)
C14—C13—C15 119.36 (13) C38—C39—C42 121.62 (16)
C13—C15—C16 121.22 (14) C40—C39—C42 120.60 (17)
C13—C15—C20 121.17 (15) C39—C40—C41 121.64 (17)
C16—C15—C20 117.61 (16) C36—C41—C40 120.49 (16)
C15—C16—C17 120.94 (16) C24—C25—H25 119.00
C16—C17—C18 121.22 (17) C26—C25—H25 119.00
C19—C18—C21 121.55 (17) O6—C27—H27A 109.00
C17—C18—C19 117.95 (17) O6—C27—H27B 110.00
C17—C18—C21 120.48 (18) O6—C27—H27C 109.00
C18—C19—C20 121.31 (17) H27A—C27—H27B 109.00
C15—C20—C19 120.95 (17) H27A—C27—H27C 109.00
C3—C4—H4 120.00 H27B—C27—H27C 109.00
C5—C4—H4 120.00 C28—C29—H29 121.00
O3—C6—H6A 109.00 C30—C29—H29 121.00
O3—C6—H6B 109.00 C29—C30—H30 120.00
O3—C6—H6C 109.00 C31—C30—H30 120.00
H6A—C6—H6B 110.00 C30—C31—H31 120.00
H6A—C6—H6C 109.00 C32—C31—H31 120.00
H6B—C6—H6C 109.00 C31—C32—H32 120.00
C7—C8—H8 121.00 C33—C32—H32 120.00
C9—C8—H8 121.00 C28—C33—H33 121.00
C10—C9—H9 120.00 C32—C33—H33 121.00
C8—C9—H9 120.00 C34—C35—H35A 109.00
C9—C10—H10 120.00 C34—C35—H35B 109.00
C11—C10—H10 120.00 C34—C35—H35C 109.00
C12—C11—H11 120.00 H35A—C35—H35B 109.00
C10—C11—H11 120.00 H35A—C35—H35C 109.00
C7—C12—H12 121.00 H35B—C35—H35C 110.00
C11—C12—H12 121.00 C36—C37—H37 120.00
C13—C14—H14A 109.00 C38—C37—H37 119.00
C13—C14—H14B 110.00 C37—C38—H38 119.00
C13—C14—H14C 109.00 C39—C38—H38 119.00
H14A—C14—H14B 109.00 C39—C40—H40 119.00
H14A—C14—H14C 109.00 C41—C40—H40 119.00
H14B—C14—H14C 109.00 C36—C41—H41 120.00
C17—C16—H16 120.00 C40—C41—H41 120.00
C15—C16—H16 119.00 C39—C42—H42A 109.00
C16—C17—H17 119.00 C39—C42—H42B 109.00
C18—C17—H17 119.00 C39—C42—H42C 109.00
C20—C19—H19 119.00 H42A—C42—H42B 110.00
C18—C19—H19 119.00 H42A—C42—H42C 109.00
C15—C20—H20 120.00 H42B—C42—H42C 109.00
C3—S1—C1—N1 0.11 (11) C3—C4—C5—O3 178.91 (14)
C3—S1—C1—N2 −179.71 (14) N1—C7—C8—C9 −179.64 (15)
C1—S1—C3—C2 −0.07 (11) C12—C7—C8—C9 0.5 (2)
C1—S1—C3—C4 177.97 (15) N1—C7—C12—C11 179.59 (14)
C24—S2—C22—N4 −1.44 (11) C8—C7—C12—C11 −0.5 (2)
C24—S2—C22—N5 178.62 (15) C7—C8—C9—C10 −0.2 (3)
C22—S2—C24—C23 −0.07 (10) C8—C9—C10—C11 −0.1 (3)
C22—S2—C24—C25 179.95 (14) C9—C10—C11—C12 0.0 (3)
C6—O3—C5—C4 176.87 (12) C10—C11—C12—C7 0.3 (3)
C6—O3—C5—O2 −2.7 (2) N3—C13—C15—C16 5.6 (2)
C27—O6—C26—C25 177.82 (12) C14—C13—C15—C20 5.1 (2)
C27—O6—C26—O5 −1.2 (2) N3—C13—C15—C20 −175.20 (15)
C2—N1—C1—S1 −0.13 (16) C14—C13—C15—C16 −174.20 (15)
C7—N1—C2—C3 173.02 (13) C13—C15—C20—C19 −177.58 (15)
C1—N1—C7—C8 90.13 (18) C13—C15—C16—C17 177.81 (15)
C1—N1—C7—C12 −89.96 (18) C16—C15—C20—C19 1.7 (2)
C2—N1—C7—C8 −82.35 (19) C20—C15—C16—C17 −1.5 (2)
C2—N1—C7—C12 97.56 (18) C15—C16—C17—C18 0.1 (3)
C1—N1—C2—O1 −179.89 (15) C16—C17—C18—C19 1.0 (3)
C1—N1—C2—C3 0.08 (17) C16—C17—C18—C21 −177.52 (18)
C7—N1—C2—O1 −7.0 (2) C21—C18—C19—C20 177.73 (18)
C7—N1—C1—N2 6.8 (2) C17—C18—C19—C20 −0.8 (3)
C2—N1—C1—N2 179.70 (14) C18—C19—C20—C15 −0.6 (3)
C7—N1—C1—S1 −173.08 (11) O4—C23—C24—S2 −178.30 (12)
N3—N2—C1—N1 −178.21 (13) O4—C23—C24—C25 1.7 (2)
C1—N2—N3—C13 −178.90 (13) N4—C23—C24—S2 1.55 (15)
N3—N2—C1—S1 1.60 (18) N4—C23—C24—C25 −178.47 (14)
N2—N3—C13—C14 0.8 (2) S2—C24—C25—C26 −2.0 (2)
N2—N3—C13—C15 −178.93 (12) C23—C24—C25—C26 178.07 (13)
C23—N4—C22—N5 −177.30 (14) C24—C25—C26—O5 −1.4 (2)
C28—N4—C22—S2 −176.83 (11) C24—C25—C26—O6 179.53 (14)
C23—N4—C22—S2 2.75 (16) N4—C28—C29—C30 179.08 (14)
C22—N4—C23—O4 177.12 (14) C33—C28—C29—C30 −0.1 (2)
C22—N4—C23—C24 −2.73 (17) N4—C28—C33—C32 −178.52 (14)
C28—N4—C23—O4 −3.3 (2) C29—C28—C33—C32 0.6 (2)
C28—N4—C23—C24 176.84 (12) C28—C29—C30—C31 −0.1 (2)
C22—N4—C28—C29 110.72 (17) C29—C30—C31—C32 −0.3 (3)
C22—N4—C28—C33 −70.12 (19) C30—C31—C32—C33 0.9 (3)
C28—N4—C22—N5 3.1 (2) C31—C32—C33—C28 −1.0 (3)
C23—N4—C28—C33 110.33 (17) N6—C34—C36—C37 −6.3 (2)
C23—N4—C28—C29 −68.83 (19) N6—C34—C36—C41 171.27 (15)
N6—N5—C22—S2 3.38 (19) C35—C34—C36—C37 174.39 (15)
N6—N5—C22—N4 −176.57 (13) C35—C34—C36—C41 −8.0 (2)
C22—N5—N6—C34 −165.53 (14) C34—C36—C37—C38 177.40 (15)
N5—N6—C34—C36 −175.22 (13) C41—C36—C37—C38 −0.3 (2)
N5—N6—C34—C35 4.0 (2) C34—C36—C41—C40 −176.81 (15)
O1—C2—C3—C4 1.8 (2) C37—C36—C41—C40 0.9 (2)
O1—C2—C3—S1 179.97 (14) C36—C37—C38—C39 −0.7 (3)
N1—C2—C3—S1 0.02 (16) C37—C38—C39—C40 1.1 (3)
N1—C2—C3—C4 −178.15 (14) C37—C38—C39—C42 −179.48 (18)
C2—C3—C4—C5 177.02 (14) C38—C39—C40—C41 −0.5 (3)
S1—C3—C4—C5 −0.8 (2) C42—C39—C40—C41 −179.92 (18)
C3—C4—C5—O2 −1.5 (2) C39—C40—C41—C36 −0.5 (3)

Hydrogen-bond geometry (Å, º)

Cg is the centroid of the C36–C41 ring.

D—H···A D—H H···A D···A D—H···A
C4—H4···O6i 0.95 2.56 3.4802 (19) 163
C6—H6B···O4i 0.98 2.52 3.465 (2) 163
C8—H8···O2ii 0.95 2.56 3.359 (2) 142
C12—H12···O4 0.95 2.43 3.302 (2) 152
C14—H14A···N2 0.98 2.28 2.728 (2) 107
C27—H27B···O1i 0.98 2.45 3.410 (2) 166
C30—H30···O5iii 0.95 2.44 3.331 (2) 157
C32—H32···O1iv 0.95 2.57 3.340 (2) 139
C35—H35A···N5 0.98 2.27 2.718 (2) 106
C33—H33···Cgv 0.95 2.58 3.4951 (19) 162

Symmetry codes: (i) −x+2, −y, −z+1; (ii) −x+1, −y, −z+1; (iii) −x+1, y+1/2, −z+1/2; (iv) x, −y+1/2, z−1/2; (v) −x+1, −y, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH5636).

References

  1. Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
  2. Babaoğlu, K., Page, M. A., Jones, V. C., McNeil, M. R., Dong, C., Naismith, J. H. & Lee, R. E. (2003). Bioorg. Med. Chem. Lett. 13, 3227–3230. [DOI] [PubMed]
  3. Barreca, M. L., Balzarini, J., Chimirri, A., Clercq, E. D., Luca, L. D., Höltje, H. D., Höltje, M., Monforte, A. M., Monforte, P., Pannecouque, C., Rao, A. & Zappala, M. (2002). J. Med. Chem. 45, 5410–5413. [DOI] [PubMed]
  4. Botti, P., Pallin, T. D. & Tam, J. P. (1996). J. Am. Chem. Soc. 118, 10018–10024.
  5. Brandenburg, K. & Putz, H. (2012). DIAMOND Crystal Impact GbR, Bonn, Germany.
  6. Bruker (2013). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  7. Çapan, G., Ulusoy, N., Ergenç, N. & Kiraz, M. (1999). Monatsh. Chem. 130, 1399–1407.
  8. Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854.
  9. Pandey, Y., Sharma, P. K., Kumar, N. & Singh, A. (2011). Int. J. Pharm. Tech. Res. 3, 980–985.
  10. Pfahl, M., Al-Shamma, H. A., Fanjul, A. N., Pleynet, D. P. M., Bao, H., Spruce, L. W., Cow, C. N., Tachdjian, C., Zapt, J. W. & &Wiemann, T. R. (2003). Patent WO 2003/050 098; Int. Appl. No. PCT/US2002/039 178.
  11. Sayyed, M., Mokle, S., Bokhare, M., Mankar, A., Surwase, S., Bhusare, S. & Vilohute, Y. (2006). Arkivoc, ii, 187–197.
  12. Sharma, R., Nagda, D. P. & Talesara, G. L. (2006). Arkivoc, i, 1–12.
  13. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  14. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813021533/lh5636sup1.cif

e-69-o1401-sup1.cif (44.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813021533/lh5636Isup2.hkl

e-69-o1401-Isup2.hkl (539.4KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813021533/lh5636Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

RESOURCES