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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2013 Aug 7;69(Pt 9):o1394–o1395. doi: 10.1107/S160053681302148X

1,2-Bis(2-hy­droxy-5-methyl­benzyl­idene)hydrazine

B Saravanan a, A Jayamani b, N Sengottuvelan b, G Chakkaravarthi c,*, V Manivannan a,*
PMCID: PMC3884483  PMID: 24427035

Abstract

The mol­ecular structure of the title compound, C16H16N2O2, is stabilized by intra­molecular O—H⋯N hydrogen bonds with S(6) graph-set motifs, so that the mol­ecule is almost planar, with a C=N—N=C torsion angle of −179.7 (2)° and a dihedral angle of 1.82 (12)° between the aromatic rings. In the crystal, weak C—H⋯π inter­actions lead to the formation of a three-dimensional network.

Related literature  

For the biological activity of Schiff base ligands, see: Kelley et al. (1995); Pandeya et al. (1999); Singh & Dash (1988); Tarafder et al. (2002). For standard bond lengths, see: Allen et al. (1987). For related strucutures, see: Chantrapromma et al. (2010); Fun et al. (2010). For graph-set motifs, see: Bernstein et al. (1995).graphic file with name e-69-o1394-scheme1.jpg

Experimental  

Crystal data  

  • C16H16N2O2

  • M r = 268.31

  • Orthorhombic, Inline graphic

  • a = 6.0108 (5) Å

  • b = 7.3394 (5) Å

  • c = 31.674 (2) Å

  • V = 1397.32 (17) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 295 K

  • 0.22 × 0.18 × 0.16 mm

Data collection  

  • Bruker Kappa APEXII diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.982, T max = 0.987

  • 5699 measured reflections

  • 2952 independent reflections

  • 1780 reflections with I > 2σ(I)

  • R int = 0.023

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.050

  • wR(F 2) = 0.154

  • S = 1.02

  • 2952 reflections

  • 185 parameters

  • H-atom parameters constrained

  • Δρmax = 0.17 e Å−3

  • Δρmin = −0.17 e Å−3

Data collection: APEX2 (Bruker, 2004); cell refinement: SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681302148X/is5296sup1.cif

e-69-o1394-sup1.cif (23.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681302148X/is5296Isup2.hkl

e-69-o1394-Isup2.hkl (142KB, hkl)

Supplementary material file. DOI: 10.1107/S160053681302148X/is5296Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg1 and Cg2 are the centroids of the C1–C6 and C10–C15 rings, respectively.

D—H⋯A D—H H⋯A DA D—H⋯A
O2—H2A⋯N2 0.82 1.91 2.635 (3) 146
O1—H1⋯N1 0.82 1.93 2.646 (3) 145
C5—H5⋯Cg1i 0.93 2.84 3.519 (3) 130
C14—H14⋯Cg2ii 0.93 2.85 3.519 (3) 130

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors acknowledge the Department of Chemistry, IIT Madras, for the data collection.

supplementary crystallographic information

1. Comment

Schiff base ligands exhibit anti-cancer, anti-fungal, anti-tumour and anti-HIV activities (Pandeya et al., 1999; Singh & Dash, 1988; Kelley et al., 1995; Tarafder et al., 2002). In the molecular structure of the title compound (Fig. 1), the bond distances are within the normal range (Allen et al., 1987) and are comparable with the related structures (Chantrapromma et al., 2010; Fun et al., 2010). In the molecule, two aromatic rings are almost co-planar, with a dihedral angle of 1.82 (12)°. The hydroxy groups form intramolecular O—H···N hydrogen bonds (O1—H1···N1 and O2—H2A···N2; Table 1) with S(6) graph-set motifs (Bernstein et al., 1995). The crystal structure also exhibits weak intermolecular C—H···π (Table 1) interactions which forms a three dimensional network.

2. Experimental

The title compound was synthesized by mixing a solution (1:2 molar ratio) of hydrazine hydrate (0.20 ml, 4 mmol) and 2-hydroxy-5-methylbenzaldehyde (1.08 g, 8 mmol) in ethanol (30 ml). The resulting solution was refluxed for 4 h, yielding (65%) the pale yellow crystalline solid. The resultant solid was filtered off and washed with methanol. Pale Yellow single crystals of the title compound suitable for X-ray structure determination were recrystalized from dimethylformamide by slow evaporation at room temperature over several days.

3. Refinement

H atoms were positioned geometrically with C—H = 0.93–0.96 Å and O—H = 0.82 Å and allowed to ride on their parent atoms, with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(O, methyl C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, with atom labels and 30% probability displacement ellipsoids for non-H atoms.

Crystal data

C16H16N2O2 F(000) = 568
Mr = 268.31 Dx = 1.275 Mg m3
Orthorhombic, P212121 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2ab Cell parameters from 2658 reflections
a = 6.0108 (5) Å θ = 2.4–27.2°
b = 7.3394 (5) Å µ = 0.09 mm1
c = 31.674 (2) Å T = 295 K
V = 1397.32 (17) Å3 Block, yellow
Z = 4 0.22 × 0.18 × 0.16 mm

Data collection

Bruker Kappa APEXII diffractometer 2952 independent reflections
Radiation source: fine-focus sealed tube 1780 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.023
ω and φ scans θmax = 27.2°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −6→7
Tmin = 0.982, Tmax = 0.987 k = −9→9
5699 measured reflections l = −40→39

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.154 H-atom parameters constrained
S = 1.02 w = 1/[σ2(Fo2) + (0.0788P)2] where P = (Fo2 + 2Fc2)/3
2952 reflections (Δ/σ)max < 0.001
185 parameters Δρmax = 0.17 e Å3
0 restraints Δρmin = −0.17 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 −0.1393 (4) 0.8872 (3) 0.28106 (7) 0.0424 (6)
C2 −0.0535 (4) 0.9211 (3) 0.24097 (7) 0.0467 (6)
H2 0.0874 0.9726 0.2387 0.056*
C3 −0.1689 (5) 0.8812 (4) 0.20427 (8) 0.0528 (7)
C4 −0.3790 (5) 0.8051 (4) 0.20879 (8) 0.0558 (7)
H4 −0.4604 0.7765 0.1847 0.067*
C5 −0.4700 (5) 0.7708 (3) 0.24753 (9) 0.0540 (7)
H5 −0.6106 0.7185 0.2493 0.065*
C6 −0.3559 (4) 0.8129 (4) 0.28389 (8) 0.0474 (7)
C7 −0.0682 (6) 0.9219 (4) 0.16150 (7) 0.0766 (10)
H7A −0.0947 0.8212 0.1428 0.115*
H7B 0.0891 0.9405 0.1645 0.115*
H7C −0.1352 1.0299 0.1500 0.115*
C8 −0.0071 (4) 0.9275 (3) 0.31799 (7) 0.0454 (6)
H8 0.1363 0.9726 0.3145 0.055*
C9 −0.0019 (4) 0.9213 (3) 0.42464 (7) 0.0451 (6)
H9 −0.1451 0.8758 0.4282 0.054*
C10 0.1302 (5) 0.9612 (3) 0.46142 (7) 0.0429 (6)
C11 0.0395 (5) 0.9322 (3) 0.50158 (7) 0.0478 (7)
H11 −0.1016 0.8810 0.5035 0.057*
C12 0.1501 (5) 0.9762 (3) 0.53841 (8) 0.0527 (7)
C13 0.3625 (6) 1.0501 (4) 0.53396 (8) 0.0578 (8)
H13 0.4417 1.0814 0.5581 0.069*
C14 0.4593 (5) 1.0786 (4) 0.49519 (8) 0.0556 (7)
H14 0.6019 1.1271 0.4935 0.067*
C15 0.3451 (5) 1.0352 (3) 0.45871 (8) 0.0460 (6)
C16 0.0438 (6) 0.9530 (4) 0.58087 (8) 0.0718 (9)
H16A −0.0435 1.0588 0.5874 0.108*
H16B 0.1573 0.9378 0.6019 0.108*
H16C −0.0504 0.8474 0.5805 0.108*
N1 −0.0818 (3) 0.9027 (3) 0.35543 (6) 0.0498 (6)
N2 0.0716 (4) 0.9465 (3) 0.38727 (6) 0.0498 (6)
O1 −0.4551 (3) 0.7801 (3) 0.32150 (5) 0.0680 (6)
H1 −0.3751 0.8171 0.3406 0.102*
O2 0.4451 (3) 1.0657 (3) 0.42094 (6) 0.0650 (6)
H2A 0.3623 1.0328 0.4018 0.098*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0381 (15) 0.0357 (12) 0.0534 (14) 0.0023 (12) −0.0003 (12) 0.0034 (10)
C2 0.0442 (15) 0.0392 (13) 0.0565 (16) 0.0000 (13) −0.0007 (12) 0.0069 (11)
C3 0.0594 (19) 0.0491 (15) 0.0499 (15) 0.0053 (16) −0.0034 (13) 0.0016 (12)
C4 0.0553 (19) 0.0488 (15) 0.0633 (17) 0.0011 (16) −0.0152 (15) −0.0051 (13)
C5 0.0412 (15) 0.0494 (14) 0.0715 (17) −0.0039 (14) −0.0070 (15) −0.0016 (14)
C6 0.0417 (16) 0.0458 (14) 0.0548 (15) 0.0020 (14) 0.0002 (13) 0.0028 (11)
C7 0.102 (3) 0.076 (2) 0.0512 (16) −0.006 (2) −0.0028 (17) 0.0065 (14)
C8 0.0386 (16) 0.0415 (13) 0.0562 (15) −0.0024 (13) −0.0057 (12) 0.0003 (12)
C9 0.0395 (15) 0.0413 (13) 0.0546 (14) −0.0010 (13) 0.0000 (12) 0.0035 (11)
C10 0.0412 (17) 0.0358 (12) 0.0518 (14) 0.0041 (12) −0.0031 (12) 0.0002 (10)
C11 0.0465 (17) 0.0399 (13) 0.0570 (15) 0.0003 (13) −0.0003 (13) 0.0042 (12)
C12 0.058 (2) 0.0425 (14) 0.0572 (16) 0.0059 (15) −0.0035 (14) 0.0008 (12)
C13 0.061 (2) 0.0471 (15) 0.0656 (18) 0.0036 (16) −0.0186 (15) −0.0005 (13)
C14 0.0401 (17) 0.0508 (15) 0.0759 (19) −0.0037 (15) −0.0086 (14) 0.0047 (14)
C15 0.0379 (16) 0.0436 (14) 0.0564 (15) −0.0008 (13) −0.0007 (13) 0.0036 (12)
C16 0.091 (3) 0.0697 (18) 0.0550 (16) 0.005 (2) 0.0022 (17) 0.0006 (14)
N1 0.0458 (13) 0.0551 (13) 0.0485 (11) −0.0018 (12) −0.0044 (10) 0.0023 (10)
N2 0.0476 (13) 0.0490 (12) 0.0527 (11) −0.0004 (11) −0.0053 (11) 0.0021 (9)
O1 0.0460 (12) 0.0922 (16) 0.0658 (12) −0.0134 (12) 0.0067 (10) 0.0055 (12)
O2 0.0490 (12) 0.0778 (14) 0.0683 (11) −0.0112 (12) 0.0037 (10) 0.0053 (11)

Geometric parameters (Å, º)

C1—C2 1.393 (3) C9—H9 0.9300
C1—C6 1.415 (3) C10—C11 1.400 (3)
C1—C8 1.445 (3) C10—C15 1.404 (3)
C2—C3 1.385 (3) C11—C12 1.381 (3)
C2—H2 0.9300 C11—H11 0.9300
C3—C4 1.388 (4) C12—C13 1.395 (4)
C3—C7 1.514 (3) C12—C16 1.499 (3)
C4—C5 1.367 (4) C13—C14 1.375 (4)
C4—H4 0.9300 C13—H13 0.9300
C5—C6 1.376 (3) C14—C15 1.381 (3)
C5—H5 0.9300 C14—H14 0.9300
C6—O1 1.354 (3) C15—O2 1.357 (3)
C7—H7A 0.9600 C16—H16A 0.9600
C7—H7B 0.9600 C16—H16B 0.9600
C7—H7C 0.9600 C16—H16C 0.9600
C8—N1 1.281 (3) N1—N2 1.404 (3)
C8—H8 0.9300 O1—H1 0.8200
C9—N2 1.277 (3) O2—H2A 0.8200
C9—C10 1.440 (3)
C2—C1—C6 117.9 (2) C10—C9—H9 119.0
C2—C1—C8 119.9 (2) C11—C10—C15 118.2 (2)
C6—C1—C8 122.3 (2) C11—C10—C9 119.3 (3)
C3—C2—C1 122.8 (2) C15—C10—C9 122.5 (2)
C3—C2—H2 118.6 C12—C11—C10 123.0 (3)
C1—C2—H2 118.6 C12—C11—H11 118.5
C2—C3—C4 117.0 (2) C10—C11—H11 118.5
C2—C3—C7 120.6 (3) C11—C12—C13 116.5 (3)
C4—C3—C7 122.4 (3) C11—C12—C16 121.8 (3)
C5—C4—C3 122.0 (3) C13—C12—C16 121.7 (3)
C5—C4—H4 119.0 C14—C13—C12 122.5 (3)
C3—C4—H4 119.0 C14—C13—H13 118.8
C4—C5—C6 120.7 (3) C12—C13—H13 118.8
C4—C5—H5 119.6 C13—C14—C15 120.1 (3)
C6—C5—H5 119.6 C13—C14—H14 119.9
O1—C6—C5 118.5 (2) C15—C14—H14 119.9
O1—C6—C1 122.0 (2) O2—C15—C14 118.6 (3)
C5—C6—C1 119.5 (2) O2—C15—C10 121.7 (2)
C3—C7—H7A 109.5 C14—C15—C10 119.7 (2)
C3—C7—H7B 109.5 C12—C16—H16A 109.5
H7A—C7—H7B 109.5 C12—C16—H16B 109.5
C3—C7—H7C 109.5 H16A—C16—H16B 109.5
H7A—C7—H7C 109.5 C12—C16—H16C 109.5
H7B—C7—H7C 109.5 H16A—C16—H16C 109.5
N1—C8—C1 121.8 (2) H16B—C16—H16C 109.5
N1—C8—H8 119.1 C8—N1—N2 113.7 (2)
C1—C8—H8 119.1 C9—N2—N1 113.9 (2)
N2—C9—C10 122.0 (2) C6—O1—H1 109.5
N2—C9—H9 119.0 C15—O2—H2A 109.5
C6—C1—C2—C3 −1.5 (4) C15—C10—C11—C12 1.3 (4)
C8—C1—C2—C3 178.2 (2) C9—C10—C11—C12 −176.3 (2)
C1—C2—C3—C4 0.3 (4) C10—C11—C12—C13 −0.9 (4)
C1—C2—C3—C7 179.6 (2) C10—C11—C12—C16 176.6 (2)
C2—C3—C4—C5 0.2 (4) C11—C12—C13—C14 0.0 (4)
C7—C3—C4—C5 −179.1 (3) C16—C12—C13—C14 −177.6 (2)
C3—C4—C5—C6 0.7 (4) C12—C13—C14—C15 0.6 (4)
C4—C5—C6—O1 178.5 (2) C13—C14—C15—O2 179.7 (2)
C4—C5—C6—C1 −1.9 (4) C13—C14—C15—C10 −0.3 (4)
C2—C1—C6—O1 −178.2 (2) C11—C10—C15—O2 179.4 (2)
C8—C1—C6—O1 2.1 (4) C9—C10—C15—O2 −3.1 (4)
C2—C1—C6—C5 2.3 (4) C11—C10—C15—C14 −0.6 (3)
C8—C1—C6—C5 −177.4 (2) C9—C10—C15—C14 176.9 (2)
C2—C1—C8—N1 178.2 (2) C1—C8—N1—N2 179.0 (2)
C6—C1—C8—N1 −2.0 (4) C10—C9—N2—N1 −179.07 (19)
N2—C9—C10—C11 179.4 (2) C8—N1—N2—C9 −179.7 (2)
N2—C9—C10—C15 2.0 (4)

Hydrogen-bond geometry (Å, º)

Cg1 and Cg2 are the centroids of the C1–C6 and C10–C15 rings, respectively.

D—H···A D—H H···A D···A D—H···A
O2—H2A···N2 0.82 1.91 2.635 (3) 146
O1—H1···N1 0.82 1.93 2.646 (3) 145
C5—H5···Cg1i 0.93 2.84 3.519 (3) 130
C14—H14···Cg2ii 0.93 2.85 3.519 (3) 130

Symmetry codes: (i) −x−1, y−1/2, −z+1/2; (ii) x+1/2, −y+5/2, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: IS5296).

References

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  2. Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555-1573.
  3. Bruker (2004). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  4. Chantrapromma, S., Jansrisewangwong, P. & Fun, H.-K. (2010). Acta Cryst. E66, o2994–o2995. [DOI] [PMC free article] [PubMed]
  5. Fun, H.-K., Jansrisewangwong, P. & Chantrapromma, S. (2010). Acta Cryst. E66, o2401–o2402. [DOI] [PMC free article] [PubMed]
  6. Kelley, J. L., Linn, J. A., Bankston, D. D., Burchall, C. J., Soroko, F. E. & Cooper, B. R. (1995). J. Med. Chem. 38, 3676–3679. [DOI] [PubMed]
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  8. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
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  12. Tarafder, M. T. H., Kasbollah, A., Saravanan, N., Crouse, K. A., Ali, A. M. & Khor, T. O. (2002). J. Biochem. Mol. Biol. Biophys. 6, 85–91. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681302148X/is5296sup1.cif

e-69-o1394-sup1.cif (23.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681302148X/is5296Isup2.hkl

e-69-o1394-Isup2.hkl (142KB, hkl)

Supplementary material file. DOI: 10.1107/S160053681302148X/is5296Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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