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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2013 Nov 13;69(Pt 12):o1765. doi: 10.1107/S1600536813030523

6-Chloro-N-(pyridin-4-ylmeth­yl)pyridine-3-sulfonamide

Parameshwar Adimoole Suchetan a, Revanasiddappa Nadigar Mohan a, Vijithkumar b, Bandrehalli Siddagangaiah Palakshamurthy c, Swamy Sreenivasa a,*
PMCID: PMC3885039  PMID: 24454215

Abstract

In the title sulfonamide derivative, C11H10ClN3O2S, the dihedral angle between the pyridine rings is 46.85 (12)°. The N atom of the chloro­pyridine ring is anti to the N—H bond. In the crystal, mol­ecules are linked through N—H⋯N hydrogen bonds into zigzag chains parallel to [001] with a C(7) graph-set motif.

Related literature  

For graph-set analysis of hydrogen-bond patterns, see: Bernstein et al. (1995). For the anti­microbial activity of related compounds, see: Desai et al. (2013); Mohan et al. (2013). For the proliferation activity of these compounds, see: Renu et al. (2006), and for their tuberculostaic acitivity, see: Gobis et al. (2013).graphic file with name e-69-o1765-scheme1.jpg

Experimental  

Crystal data  

  • C11H10ClN3O2S

  • M r = 283.73

  • Monoclinic, Inline graphic

  • a = 5.4140 (6) Å

  • b = 18.172 (2) Å

  • c = 12.9392 (15) Å

  • β = 92.388 (6)°

  • V = 1271.9 (2) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.46 mm−1

  • T = 293 K

  • 0.35 × 0.29 × 0.23 mm

Data collection  

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009) T min = 0.852, T max = 0.899

  • 20929 measured reflections

  • 2961 independent reflections

  • 2185 reflections with I > 2σ(I)

  • R int = 0.035

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.044

  • wR(F 2) = 0.137

  • S = 0.82

  • 2961 reflections

  • 167 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.27 e Å−3

  • Δρmin = −0.39 e Å−3

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT-Plus (Bruker, 2009); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813030523/wm2782sup1.cif

e-69-o1765-sup1.cif (20.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813030523/wm2782Isup2.hkl

e-69-o1765-Isup2.hkl (142.4KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813030523/wm2782Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N2—HN2⋯N3i 0.78 (3) 2.10 (3) 2.870 (3) 174.53

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors thank Prof T. N. Guru Row, Solid State and Structural Chemistry Unit, Indian Institute of Science, Bangalore, for his help and valuable suggestions.

supplementary crystallographic information

1. Comment

Pyridine ring containing sulfonamide moieties show antimicrobial activity (Desai et al., 2013; Mohan et al., 2013), proliferation activity (Renu et al., 2006) and tuberculostaic acitivity (Gobis et al., 2013). Keeping this in mind, the title compound, C11H10ClN3O2S, (I), was synthesized and its crystal structure determined.

In the structure of compound (I) the dihedral angle between the two pyridine rings is 46.85(12°. The N-atom of the chloropyridine ring in the compound is anti to the N—H bond (Fig 1). In the crystal structure, the molecules are linked through N2—HN2···N3 hydrogen bonds (Table 1, Fig. 2) into zigzag chains with graph-set notation C(7) (Bernstein et al. 1995) running parallel to [001] .

2. Experimental

Pyridin-4-ylmethanamine (7.4 mmol) was taken in dry dichloromethane (10 ml) and cooled to 273 K. To this solution 6-chloropyridine-3-sulfonyl chloride (7.4 mmol) in dichloromethane and triethylamine (1.48 mmol) was added slowly and the solution was heated to 323 K for 4 h. The reaction was monitored by TLC. The reaction mixture was cooled and washed with 10% sodium bicarbonate solution. The organic layer was separated, dried and concentrated to obtain the crude compound. It was purified by column chromatography using petroleum ether: ethyl acetate (7:3) as eluent.

Yellow prisms of the title compound suitable for diffraction studies were obtained from evapouration of the solution of the compound in a mixture of petroleum ether: ethyl acetate (7:3).

3. Refinement

The H atom of the NH group was located in a difference map and refined freely. The other H atoms were positioned with idealized geometry using a riding model with C—H = 0.93 Å (aromatic) and 0.97 Å (methylene). Isotropic displacement parameters for all H atoms were set to 1.2 times Ueq of the parent atom.

Figures

Fig. 1.

Fig. 1.

Molecular structure of the title compound, showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level.

Fig. 2.

Fig. 2.

Linking of individual molecules into C(7) chains parallel to [001] through N—H···N hydrogen bonds. H-atoms not involved in H-bonding are omitted for clarity.

Crystal data

C11H10ClN3O2S Prism
Mr = 283.73 Dx = 1.482 Mg m3
Monoclinic, P21/c Melting point: 492 K
Hall symbol: -P 2ybc Mo Kα radiation, λ = 0.71073 Å
a = 5.4140 (6) Å Cell parameters from 1103 reflections
b = 18.172 (2) Å θ = 1.9–27.8°
c = 12.9392 (15) Å µ = 0.46 mm1
β = 92.388 (6)° T = 293 K
V = 1271.9 (2) Å3 Prism, yellow
Z = 4 0.35 × 0.29 × 0.23 mm
F(000) = 584

Data collection

Bruker APEXII CCD diffractometer 2961 independent reflections
Radiation source: fine-focus sealed tube 2185 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.035
φ and ω scans θmax = 27.8°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2009) h = −7→7
Tmin = 0.852, Tmax = 0.899 k = −23→23
20929 measured reflections l = −13→16

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.137 H atoms treated by a mixture of independent and constrained refinement
S = 0.82 w = 1/[σ2(Fo2) + (0.0847P)2 + 0.7427P] where P = (Fo2 + 2Fc2)/3
2961 reflections (Δ/σ)max < 0.001
167 parameters Δρmax = 0.27 e Å3
0 restraints Δρmin = −0.39 e Å3

Special details

Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
HN2 0.486 (4) 0.3469 (13) 0.213 (2) 0.058 (7)*
S1 0.32655 (10) 0.44681 (3) 0.19440 (4) 0.0590 (2)
Cl1 1.10225 (15) 0.64661 (4) 0.41805 (6) 0.0911 (3)
C1 0.5418 (4) 0.50525 (11) 0.25986 (16) 0.0486 (4)
C7 0.6225 (4) 0.32076 (10) 0.00501 (15) 0.0474 (4)
N2 0.4712 (4) 0.37356 (11) 0.16614 (15) 0.0584 (5)
C3 0.8769 (4) 0.59143 (12) 0.35659 (18) 0.0600 (5)
N3 0.5621 (4) 0.22140 (11) −0.15918 (16) 0.0692 (5)
C11 0.4300 (4) 0.27124 (12) −0.00074 (17) 0.0571 (5)
H11 0.3157 0.2700 0.0509 0.068*
N1 0.8263 (5) 0.60509 (13) 0.2581 (2) 0.0899 (7)
O1 0.1498 (3) 0.42543 (11) 0.26714 (16) 0.0804 (5)
O2 0.2501 (4) 0.48324 (12) 0.10098 (16) 0.0912 (6)
C10 0.4071 (4) 0.22353 (13) −0.08329 (19) 0.0653 (6)
H10 0.2746 0.1909 −0.0856 0.078*
C5 0.6049 (6) 0.49344 (15) 0.36172 (19) 0.0785 (8)
H5 0.5314 0.4553 0.3973 0.094*
C2 0.6559 (6) 0.56102 (15) 0.2099 (2) 0.0822 (8)
H2 0.6153 0.5691 0.1402 0.099*
C8 0.7862 (5) 0.31869 (14) −0.0734 (2) 0.0676 (6)
H8 0.9200 0.3508 −0.0731 0.081*
C6 0.6641 (4) 0.37509 (14) 0.09095 (17) 0.0635 (6)
H6A 0.8220 0.3648 0.1262 0.076*
H6B 0.6725 0.4241 0.0617 0.076*
C4 0.7741 (6) 0.53707 (15) 0.41083 (18) 0.0797 (8)
H4 0.8183 0.5298 0.4803 0.096*
C9 0.7497 (5) 0.26847 (16) −0.1525 (2) 0.0805 (8)
H9 0.8635 0.2675 −0.2044 0.097*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0487 (3) 0.0671 (4) 0.0603 (4) −0.0063 (2) −0.0084 (2) 0.0061 (3)
Cl1 0.0924 (5) 0.0868 (5) 0.0934 (5) −0.0227 (4) −0.0072 (4) −0.0295 (4)
C1 0.0463 (10) 0.0461 (10) 0.0534 (11) 0.0038 (8) 0.0016 (8) 0.0003 (8)
C7 0.0480 (10) 0.0485 (10) 0.0454 (10) 0.0020 (8) −0.0032 (8) 0.0064 (8)
N2 0.0767 (12) 0.0571 (10) 0.0413 (10) −0.0150 (9) 0.0034 (8) 0.0012 (8)
C3 0.0623 (13) 0.0550 (12) 0.0626 (14) −0.0032 (10) 0.0027 (10) −0.0153 (10)
N3 0.0808 (13) 0.0633 (11) 0.0640 (12) 0.0020 (10) 0.0095 (10) −0.0132 (9)
C11 0.0542 (11) 0.0622 (12) 0.0554 (12) −0.0072 (10) 0.0088 (9) −0.0077 (10)
N1 0.1045 (18) 0.0783 (14) 0.0853 (17) −0.0339 (13) −0.0122 (14) 0.0155 (12)
O1 0.0526 (9) 0.0965 (13) 0.0928 (13) −0.0144 (9) 0.0127 (9) −0.0050 (11)
O2 0.0814 (12) 0.1002 (14) 0.0883 (14) −0.0074 (10) −0.0385 (11) 0.0283 (11)
C10 0.0620 (13) 0.0641 (13) 0.0700 (15) −0.0071 (11) 0.0051 (11) −0.0144 (11)
C5 0.106 (2) 0.0773 (16) 0.0522 (14) −0.0350 (15) 0.0037 (13) 0.0053 (12)
C2 0.098 (2) 0.0758 (16) 0.0713 (16) −0.0242 (14) −0.0187 (15) 0.0251 (13)
C8 0.0635 (14) 0.0694 (14) 0.0710 (15) −0.0096 (11) 0.0158 (12) −0.0021 (12)
C6 0.0645 (13) 0.0728 (14) 0.0532 (12) −0.0219 (11) 0.0026 (10) −0.0049 (11)
C4 0.111 (2) 0.0838 (17) 0.0432 (12) −0.0313 (15) −0.0079 (13) −0.0001 (11)
C9 0.0896 (19) 0.0863 (18) 0.0678 (16) −0.0030 (15) 0.0309 (14) −0.0107 (14)

Geometric parameters (Å, º)

S1—O1 1.4238 (19) N3—C9 1.328 (3)
S1—O2 1.4244 (18) C11—C10 1.377 (3)
S1—N2 1.595 (2) C11—H11 0.9300
S1—C1 1.767 (2) N1—C2 1.354 (3)
Cl1—C3 1.745 (2) C10—H10 0.9300
C1—C2 1.364 (3) C5—C4 1.350 (3)
C1—C5 1.365 (3) C5—H5 0.9300
C7—C11 1.376 (3) C2—H2 0.9300
C7—C8 1.375 (3) C8—C9 1.379 (4)
C7—C6 1.497 (3) C8—H8 0.9300
N2—C6 1.457 (3) C6—H6A 0.9700
N2—HN2 0.78 (3) C6—H6B 0.9700
C3—N1 1.316 (3) C4—H4 0.9300
C3—C4 1.346 (3) C9—H9 0.9300
N3—C10 1.318 (3)
O1—S1—O2 120.54 (13) N3—C10—H10 118.1
O1—S1—N2 105.88 (11) C11—C10—H10 118.1
O2—S1—N2 108.75 (13) C4—C5—C1 120.0 (2)
O1—S1—C1 107.16 (11) C4—C5—H5 120.0
O2—S1—C1 106.87 (11) C1—C5—H5 120.0
N2—S1—C1 106.94 (10) N1—C2—C1 122.3 (2)
C2—C1—C5 118.3 (2) N1—C2—H2 118.9
C2—C1—S1 121.47 (18) C1—C2—H2 118.9
C5—C1—S1 120.14 (17) C7—C8—C9 119.2 (2)
C11—C7—C8 116.9 (2) C7—C8—H8 120.4
C11—C7—C6 124.15 (19) C9—C8—H8 120.4
C8—C7—C6 118.97 (19) N2—C6—C7 113.18 (17)
C6—N2—S1 120.65 (17) N2—C6—H6A 108.9
C6—N2—HN2 118.6 (19) C7—C6—H6A 108.9
S1—N2—HN2 112.0 (18) N2—C6—H6B 108.9
N1—C3—C4 124.7 (2) C7—C6—H6B 108.9
N1—C3—Cl1 116.52 (19) H6A—C6—H6B 107.8
C4—C3—Cl1 118.74 (19) C3—C4—C5 118.2 (2)
C10—N3—C9 116.2 (2) C3—C4—H4 120.9
C7—C11—C10 119.8 (2) C5—C4—H4 120.9
C7—C11—H11 120.1 N3—C9—C8 124.1 (2)
C10—C11—H11 120.1 N3—C9—H9 118.0
C3—N1—C2 116.4 (2) C8—C9—H9 118.0
N3—C10—C11 123.8 (2)
O1—S1—C1—C2 −148.2 (2) C2—C1—C5—C4 0.9 (4)
O2—S1—C1—C2 −17.7 (3) S1—C1—C5—C4 178.3 (2)
N2—S1—C1—C2 98.7 (2) C3—N1—C2—C1 0.0 (5)
O1—S1—C1—C5 34.4 (2) C5—C1—C2—N1 −0.7 (5)
O2—S1—C1—C5 164.9 (2) S1—C1—C2—N1 −178.2 (2)
N2—S1—C1—C5 −78.7 (2) C11—C7—C8—C9 0.3 (3)
O1—S1—N2—C6 178.59 (17) C6—C7—C8—C9 179.6 (2)
O2—S1—N2—C6 47.7 (2) S1—N2—C6—C7 −125.57 (19)
C1—S1—N2—C6 −67.37 (19) C11—C7—C6—N2 −3.3 (3)
C8—C7—C11—C10 −0.9 (3) C8—C7—C6—N2 177.4 (2)
C6—C7—C11—C10 179.8 (2) N1—C3—C4—C5 −0.6 (5)
C4—C3—N1—C2 0.7 (5) Cl1—C3—C4—C5 −178.2 (2)
Cl1—C3—N1—C2 178.4 (2) C1—C5—C4—C3 −0.2 (5)
C9—N3—C10—C11 0.5 (4) C10—N3—C9—C8 −1.2 (4)
C7—C11—C10—N3 0.5 (4) C7—C8—C9—N3 0.8 (4)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N2—HN2···N3i 0.78 (3) 2.10 (3) 2.870 (3) 174.53

Symmetry code: (i) x, −y+1/2, z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: WM2782).

References

  1. Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573.
  2. Bruker (2009). APEX2, SADABS and SAINT-Plus Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Desai, N. C., Satodiya, H. M., Rajpara, K. M., Joshi, V. V. & Vaghani, H. V. (2013). Indian J. Chem. Sect. B, 52, 904–914.
  4. Gobis, K., Foks, H., Slawinski, J., Augustynowicz-Kopec, E. & Napiorkowska, A. (2013). Monatsh. Chem. 144, 1197–1203. [DOI] [PMC free article] [PubMed]
  5. Macrae, C. F., Bruno, I. J., Chisholm, J. A., Edgington, P. R., McCabe, P., Pidcock, E., Rodriguez-Monge, L., Taylor, R., van de Streek, J. & Wood, P. A. (2008). J. Appl. Cryst. 41, 466–470.
  6. Mohan, R. N., Sreenivasa, S., Manojkumar, K. E. & Madhu Chakrapani Rao, T. (2013). J. Appl. Chem. 2, 722–729.
  7. Renu, M., Mithu, B., Anasuya, R., Tapas, M., Leslie, W., Takashi, O., Bhabatarak, B. & Dulal, P. (2006). Biochemistry, 45, 5440–5449.
  8. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813030523/wm2782sup1.cif

e-69-o1765-sup1.cif (20.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813030523/wm2782Isup2.hkl

e-69-o1765-Isup2.hkl (142.4KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813030523/wm2782Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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