Table 3.
STR marker | Primers (5′–3′) | Amplicon size (bp) | Ta (°C) |
---|---|---|---|
18-3 |
18-3 F:TCTTTCTCCTTTTGTGTCATGC 18-3 R: GTCAAAGTTGGGGTTACAGAATG* |
281–313 | 54 |
4-2 |
4-2 F:AAGCTTCTCTGGCCATTTGA 4-2 R:GTTCATAAACTTCAAGCAATGACA |
217–248 | 57 |
6-7 |
6-7 F:AGTCCACCCAGTGCATTCTC 6-7 R:GCATGTGGCTGGTATGCTGTT |
333–515 | 60 |
9-2 |
9-2 F:GGCTCTCTCACACCTCATCC* 9-2 R:GTCCATGAATCCAGACATTCC |
318–360 | 60 |
15-3 |
15-3F: TCTGGGCGTGTCTGTCATAA 15-3 R:GTTCTCAGGGAGGAGTGTGCT |
157–222 | 60 |
6-4 |
6-4 F:TTTGCAACAGCTCAGTTTCC 6-4 R:GAATCGCTGGCAGATCTTAGG |
276–311 | 52 |
12-1 |
12-1 F:CAAAATTGTCATTGAACACATGTAA* 12-1 R:GCAATGGTCAAGAAATACTGAAGTACAA |
222–259 | 55 |
5-5 |
5-5 F:CGTTTTACCTGGCTGACACA 5-5 R:GATGCTTGCCTGTTCCTAGC |
258–298 | 60 |
X-1 |
X-1 F:GGATGGATGGATGGATGAAA X-1 R:GAAGGTATATATCAAGATGGCATTATCA |
357–442 | 54 |
Sequencing primers listed with their respective amplicon size range (bp) and annealing temperatures (Ta). Primers that are not included in the multiplex assay (*) were designed for samples that were difficult to sequence with the original primers