In this article, we found errors in the genotype data for 5 single nucleotide polymorphisms (SNPs). We therefore corrected Tables 4 and 5 (only the revised data are presented). In addition, the main text from the last sentence of the third paragraph through the end of the fourth paragraph of the Results section should be amended as follows: “For the remaining 104 polymorphisms, the MAF varied from 0.016 (PTGS2(COX2) C-163G) to 0.479 (CETP Val405Ile (G/A)), and most of the variations were common (MAF ≥0.05 for 96 polymorphisms).
Table 4. Genotype distributions and allele frequencies of 108 selected genetic polymorphisms (corrected part only).
Gene | Polymorphism | rs number | Genotypea | na | Frequency (proportion) |
P for HWE |
MAF | ||||||||||
Observed | Expectedb | ||||||||||||||||
AA | Aa | aa | AA | Aa | aa | XX | AA | Aa | aa | AA | Aa | aa | |||||
ADH1C | Arg272Gln (C/T) | rs1693482 | CC | CT | TT | 4027 | 474 | 15 | 3 | 0.892 | 0.105 | 0.003 | 0.892 | 0.105 | 0.003 | 0.78 | 0.056 |
ADIPOQ | G276T | rs1501299 | GG | GT | TT | 2353 | 1791 | 374 | 1 | 0.521 | 0.396 | 0.083 | 0.517 | 0.404 | 0.079 | 0.21 | 0.281 |
CETP | Val405Ile (G/A) | rs5882 | GG | GA | AA | 1254 | 2198 | 1066 | 1 | 0.278 | 0.486 | 0.236 | 0.271 | 0.499 | 0.230 | 0.089 | 0.479 |
CETP | G/T | rs3764261 | GG | GT | TT | 2877 | 1430 | 210 | 2 | 0.637 | 0.317 | 0.046 | 0.632 | 0.326 | 0.042 | 0.061 | 0.205 |
GCK | G-30A | rs1799884 | GG | GA | AA | 3056 | 1317 | 145 | 1 | 0.676 | 0.292 | 0.032 | 0.676 | 0.292 | 0.032 | 0.84 | 0.178 |
Abbreviations: HWE, Hardy-Weinberg equilibrium; MAF, minor allele frequency; SNP, single nucleotide polymorphism.
aAA, Aa, aa and XX indicate homozygotes of major alleles, heterozygotes, homozygotes of minor alleles, and samples of which genotype could not be determined, respectively.
bBased on the Hardy-Weinberg equilibrium.
Table 5. Minor allele frequencies of selected genetic polymorphisms by study area (corrected part only).
Gene | Polymorphism | rs number | Minor allele frequency by study area | Pa | ||||||||||
Total | Chiba | Shizu- oka |
Okazaki | ACC | Taka- shima |
Kyoto | Toku- shima |
Fukuoka | Saga | Amami | ||||
ADH1C | Arg272Gln (C/T) | rs1693482 | 0.056 | 0.053 | 0.068 | 0.035 | 0.046 | 0.056 | 0.053 | 0.058 | 0.065 | 0.053 | 0.072 | 0.013 |
ADIPOQ | G276T | rs1501299 | 0.281 | 0.290 | 0.284 | 0.301 | 0.279 | 0.266 | 0.263 | 0.289 | 0.286 | 0.308 | 0.236 | 0.024 |
CETP | Val405Ile (G/A) | rs5882 | 0.479 | 0.463 | 0.478 | 0.462 | 0.477 | 0.502 | 0.491 | 0.542 | 0.505 | 0.444 | 0.494 | 0.058 |
CETP | G/T | rs3764261 | 0.205 | 0.183 | 0.194 | 0.209 | 0.203 | 0.188 | 0.209 | 0.158 | 0.204 | 0.223 | 0.240 | 0.028 |
GCK | G-30A | rs1799884 | 0.178 | 0.193 | 0.179 | 0.183 | 0.186 | 0.179 | 0.138 | 0.147 | 0.191 | 0.173 | 0.159 | 0.29 |
Abbreviations: ACC, Aichi Cancer Center; SNP, single nucleotide polymorphism.
aP for difference among study areas.
The P value for departures from the Hardy-Weinberg equilibrium was less than 0.05 for 15 polymorphisms. However, the only genotype for which the difference between the observed and expected frequencies exceeded 3% was the SLC30A8 Arg325Trp (C/T) heterozygote. As shown in Table 5, some polymorphisms demonstrated a considerable difference in MAF among the participating cohorts; for 27 of the 108 polymorphisms, including ABCC11 Arg180Gly (T/C), there was a highly significant difference in MAF among study areas (P < 0.001).”
Furthermore, the first sentence of the third paragraph of the Discussion should read: “Of the remaining 104 polymorphisms, 15 showed departures from the Hardy-Weinberg equilibrium, with P values less than 0.05.”
The authors regret these errors.