Abstract
Ralstonia pickettii is a nonfermenting Gram-negative bacillus that creates a significant problem in clinical settings, as it is a widespread cause of nosocomial infections. Here, we report the draft genome sequence of R. pickettii AU12-08, isolated from an intravascular catheter tip.
GENOME ANNOUNCEMENT
Ralstonia pickettii was previously known as Pseudomonas pickettii and Burkholderia pickettii (1). R. pickettii is an aerobic Gram-negative, oxidase-positive, nonfermenting rod that has been isolated from a wide variety of clinical specimens, including blood, urine, and cerebrospinal fluid (2). R. pickettii is not considered to be a major pathogen, and its virulence level is thought to be low (3). However, a wide range of R. pickettii infections have been reported recently (4). This demonstrates that this organism might be a more widespread pathogen than was thought. In addition, the types of infections are more invasive and severe than was thought (4).
R. pickettii AU12-08 was isolated from an intravascular catheter tip by rolling the tip back and forth on the surface of a Columbia agar plate supplemented with 5% sheep blood, essentially as described by Maki et al. (5). DNA was prepared and the genome sequence of R. pickettii AU12-08 was determined on a 454 GS FLX system using Titanium chemistry (Roche) (6). The sequence data consist of 135,359,388 bp of DNA sequence at 22× coverage. A total of 78 contigs (>500 bp) were de novo assembled using the Roche GS de novo assembler (version 2.3). The contig N50 is 178,545 bp, and the largest contig assembled is 592,110 bp. The contigs were then ordered and oriented into 14 scaffolds using paired-end information. The average length of the scaffolds is 446,804 bp.
The draft genome of R. pickettii AU12-08 consists of a circular 6,229,152-bp chromosome, with a G+C content of 63.6%. The genome was automatically annotated using the RAST server (7). The genome contains 50 tRNA genes coding for all amino acids and 5,733 predicted protein-coding genes, consistent with other sequenced Ralstonia spp. (8, 9). We identified numerous putative virulence factors, including those involved in quorum sensing and biofilm formation, as well as the production of bacteriocins and invasins. The R. pickettii AU12-08 genome contains 22 putative resistance-nodulation-cell division multidrug resistance efflux pumps, and 13 genes code for multidrug resistance. Four genes code for resistance to fluoroquinolones and 10 genes code for β-lactam antibiotics. In addition, 170 genes code for resistance to toxic compounds, including cobalt-zinc-cadmium resistance, copper homeostasis, mercury resistance, and arsenic and bile hydrolysis.
The sequence of the R. pickettii AU12-08 genome will greatly improve our understanding of the drug resistance and pathogenicity of this organism.
Nucleotide sequence accession number.
The genome sequence of R. rickettii AU12-08 has been deposited in NCBI GenBank under the accession no. ASZV00000000.
ACKNOWLEDGMENT
L.Z. is supported by an NHMRC training clinical research fellowship (Australian Government grant no. 597491).
Footnotes
Citation Zhang L, Morrison M, Rickard CM. 2014. Draft genome sequence of Ralstonia pickettii AU12-08, isolated from an intravascular catheter in Australia. Genome Announc. 2(1):e00027-14. doi:10.1128/genomeA.00027-14.
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