Abstract
The principal finding of this study is that two drugs, alverine and benfluorex, used in vastly different clinical settings and previously unknown to share mechanistic or structural similarity, activated the nuclear receptor transcription factor HNF4α. Both were hits in a high-throughput screen for compounds that reversed the inhibitory effect of the fatty acid palmitate on human insulin promoter activity. Alverine is used in the treatment of irritable bowel syndrome, while benfluorex (Mediator) was used to treat hyperlipidemia and type II diabetes. Benfluorex was withdrawn from the market recently because of serious cardiovascular side effects related to fenfluramine-like activity. Strikingly, alverine and benfluorex have a previously unrecognized structural similarity, consistent with a common mechanism of action. Gene expression and biochemical studies revealed that they both activate HNF4α. This novel mechanism of action should lead to a reinterpretation of previous studies with these drugs and suggests a path towards the development of therapies for diseases such as inflammatory bowel and diabetes that may respond to HNF4α activators.
INTRODUCTION
A key element in the pathogenesis of type II diabetes is β-cell dysfunction and loss, resulting in deterioration in insulin secretion over time1. A major factor leading to β-cell dysfunction is thought to be high levels of circulating lipids, including free fatty acids. Chronic exposure of pancreatic β-cells to fatty acids inhibits β-cell function in vitro and in vivo and can lead to β-cell apoptosis2. Recent data suggest that free fatty acid inhibition of insulin gene expression is an early functional defect that may contribute to β-cell failure in type 2 diabetes3. Thus, β-cells exposed to elevated fatty acids represent an in vitro model of some important aspects of type 2 diabetes,
Given the central role of fatty acids in the pathogenesis of type II diabetes, compounds that prevent β-cell failure in the face of lipotoxic stress from fatty acids hold promise as potential drugs. One approach to the discovery and development of such drugs is high throughput screening (HTS) with cells cultured in the presence of fatty acids to detect compounds that antagonize lipotoxic effects on those cells. Previously, we performed HTS for compounds that modulate the insulin promoter using a novel human islet cell line, T6PNE, derived from human fetal islets4.
In one case, we found a previously unrecognized activity of antipsychotics in activating the TGFβ pathway effector SMAD34b, c. Another screen yielded a potent antagonist of the nuclear receptor transcription factor hepatic nuclear factor 4 alpha (HNF4α)4a. HNF4α is a central regulator of gene expression in cell types that play a critical role in metabolic homeostasis, including pancreatic β-cells, where it plays a critical role in insulin gene expression and secretion and is mutated in a monogenic form of diabetes, MODY15.
To search for compounds that reversed the inhibitory effects of fatty acids on the insulin promoter, we adapted the T6PNE insulin promoter assay, priming the assay with the fatty acid palmitate to inhibit insulin promoter activity. A screen of a library of known drugs for those that increased insulin promoter activity in the presence of palmitate yielded as hits the drugs alverine and benfluorex. In light of the fact that these two drugs are used clinically for completely different purposes and were believed to have distinct mechanisms of action, we were surprised to find that they have a high degree of structural similarity. Given that similarity and the fact that they were hits in the same assay, we hypothesized that they might be acting on a common target. Here, we report that alverine and benfluorex act as HNF4α activators. This finding should lead to a reinterpretation of previous studies of these drugs, as well as open the door to new therapeutic opportunities based on this novel mechanism of action.
RESULTS AND DISCUSSION
Screen of a library of known drugs for those that reverse insulin promoter repression by fatty acids
Previously, we found that fatty acids repressed the human insulin promoter in T6PNE cells4a. This offered the opportunity to adapt the T6PNE insulin promoter assay4c to detect compounds that reversed the effect of fatty acids on the insulin promoter. To that end, we developed a dose response curve of the human insulin promoter-GFP transgene in T6PNE cells to palmitate. Consistent with our previous results demonstrating that palmitate dose-dependently inhibited the endogenous human insulin promoter in T6PNE cells4a, it repressed the transgene as well (Figure 1A).
Based on the dose-response curve, we conducted a screen of T6PNE cells in the presence of 0.03mM palmitate. A screen of the NIH/JDRF library of known drugs4c for those that increased the number of GFP-positive cells in the presence of palmitate was conducted in triplicate. Benfluorex and alverine citrate consistently activated insulin promoter activity as measured by an increased number of GFP-positive cells (Figure 1B). Both drugs passed confirmatory assays, including increasing the number of GFP-positive cells in a dose-responsive manner (Figure 2A) and increasing the level of endogenous insulin mRNA (Figure 2B). Neither had estrogenic activity, which causes false-positive results in our assay4c.
The fact that benfluorex was positive in our assay was gratifying, as it was used in the treatment of hyperlipidemia and type II diabetes6. Alverine is an antispasmodic used in the treatment of irritable bowel syndrome7, with no known connection to diabetes or the effects of fatty acids. Strikingly, an examination of the structures of benfluorex and alverine revealed substantial similarity between the two compounds (Figure 3), a finding that has not been reported previously.
Alverine was first described in 1939 as having been synthesized as a synthetic analog of papaverine, a smooth muscle relaxant8. It has been used since then as an antispasmodic in the treatment of irritable bowel syndrome, a poorly defined condition that can present with diarrhea or constipation7. Therapeutic benefit in that condition has been variable7, 9. Alverine has not been well studied for its mechanism of action10, although it has been described as an antagonist of the 5-hydroxytryptamine 1A (5-HT1A) receptor11.
Benfluorex (CAS 23602-78-0) was described in a French patent issued in 196912 as a synthetic an analog of fenfluramine12. It came into clinical use as a therapy for type II diabetes, where it was found to improve lipid profiles and to reduce the hemoglobin A1C13. However the mechanism by which it exerted those effects was never studied carefully. Fenfluramine is a potent agonist of serotonin 5-HT2 receptors14, and gained notoriety for being part of the diet drug Phen-Fen. As a result, a common assumption was that the mechanism of action of benfluorex was through effects on weight15. Fenfluramine was found to cause severe cardiopulmonary side effects, including valvular heart disease, leading to its withdrawal from the market in the USA and elsewhere in 199716. In 2006, benfluorex was recognized as causing the same problem15, 17, leading to its withdrawal from the market in Europe amidst a high degree of controversy because of the long delay between the recognition of side effects from fenfluramine and the withdrawal of benfluorex from the market18.
Alverine and Benfluorex are HNF4α activators
Previous studies of benfluorex and alverine indicated that they had distinct mechanisms of action10–11, 19. However, given that the compounds were structurally similar, we reasoned that a previously unrecognized but common target of the two drugs might be responsible for their effect in our assay.
Determining the precise molecular target of HTS hits from phenotypic assays is notoriously difficult20. Previously, we used a cheminformatic approach to discover that a small molecule from a diverse chemical library used to screen the T6PNE insulin promoter assay was a potent antagonist of HNF4α4a. The natural ligands for HNF4α are thought to be fatty acids21, and we found them to act as HNF4α antagonists4a. Thus, we hypothesized that alverine and benfluorex, which increase insulin promoter activity in the face of added fatty acids, might be acting as HNF4α agonists.
As an initial test of that hypothesis, we determined whether alverine and benfluorex increased the expression of HNF4α mRNA, as we found previously that potent HNF4α antagonists inhibited HNF4α expression through a well-known positive feedback loop22. Consistent with their being HNF4α activators, both alverine and benfluorex stimulated HNF4α expression (Figure 4).
As a further test of whether alverine and benfluorex acted on HNF4α, we tested whether they affected genes that were repressed by a synthetic HNF4α antagonist, BIM5078, that was discovered by us as a potent repressor of insulin gene expression4a. Genes were selected from those that were most repressed by BIM5078 in T6PNE cells4a (Gene Expression Omnibus database-GSE33432). Consistent with our previous results, all of the genes were strongly repressed by BI6015, a more potent and specific HNF4α antagonist than BIM5078, to which it is highly structurally related4a.
HTR3C, ACTG2, and HBEGF mRNA responded to alverine, benfluorex, or both, while DBH was not significantly affected by either (Figure 4). Given that HNF4α has a high level of basal activity, it is not unexpected that some genes that are repressed by an HNF4α antagonist will respond to a much lesser extent, or perhaps not at all, to an agonist, depending on the extent to which the maximal response of the gene to HNF4α has already been achieved in that cell. Consequently, the response of the genes tested is consistent with what is expected for an HNF4α activator.
Effect on HNF4α structure
Because HNF4α ligand exchange is extremely inefficient in vitro21a, we have used a protease sensitivity assay termed drug affinity target responsive stability (DARTS)23, to determine whether a compound interacts directly with a putative target. With DARTS, the effect of a putative ligand on protein structure is detected by a change in the sensitivity of the protein to proteolytic cleave. Previously, we used this technique to show that novel synthetic HNF4α antagonists interacted with HNF4α4a. Here, we used it to ascertain whether alverine and benfluorex induced a conformational change in HNF4α, suggesting direct interaction. BI6015, alverine, and benfluorex each altered HNF4α protease sensitivity, while the inactive control compound BI60184a did not (Figure 5).
The beneficial effect of benfluorex and the well-known role of HNF4α in diabetes5d, 24 raises the possibility that its mechanism of action in that disease might have been through effects on HNF4α rather than or in addition to activation of serotonin receptors. HNF4α plays an important role in diabetes pathogenesis, being mutated in a monogenic form of diabetes, MODY15e, and playing a critical role in hepatocytes and β-cells, two of the major cell types involved in diabetes5c, d, 25. Our recent finding that fatty acids act as HNF4α antagonists4a suggests that reversing the deleterious effects of fatty acids on HNF4α by administration of an HNF4α activator may be beneficial as a therapy for type II diabetes. However, neither alverine, which is poorly absorbed systemically, nor benfluorex, which causes valvular heart disease, is suitable. Improved HNF4α agonists must be developed to test that hypothesis.
Benfluorex is metabolized by cleavage of an ester moiety into fenfluramine but alverine lacks the ester linkage. Alverine is poorly absorbed through the gastrointestinal tract, limiting its systemic effects26. Thus, it is well suited for applications where enhancement of HNF4α activity in the intestine might be of value, such as inflammatory bowel disease, a disease state in which HNF4α plays an important role27. A subset of patients with irritable bowel syndrome, the current indication for alverine, have an inflammatory component to their disease28, and some overlap between irritable bowel syndrome and inflammatory bowel disease appears to exist29. To date, alverine has not been tested in inflammatory bowel disease.
In conclusion, the finding that benfluorex and alverine activate the nuclear receptor transcription factor HNF4α opens the door to a reinterpretation of their previously noted clinical effects, as well as to a potential for new therapeutic applications.
METHODS
Compound library screening in T6PNE
The properties of the T6PNE cells and their use in HTS was described previously4a. The previously described assay was modified as follows: T6PNE cells were seeded at 2,000 cells per well in 384-well tissue culture plates (Greiner Bio-One) in the presence of 1µM tamoxifen and 0.03mM palmitate. Compound addition (active compound in DMSO or vehicle alone) occurred 24 hours after tamoxifen administration with the BiomekFX (Beckman Coulter). Forty-eight hours after compound addition, cells were fixed in 4% paraformaldehyde (USbio) and stained with DAPI (0.167 µg/ml, Invitrogen). Blue (DAPI) and green (human insulin promoter driving GFP) channels were imaged using the GE/Amersham InCell 1000 high-throughput microscopy system. Images were processed (Cytoshop, Beckman Coulter) then a MATLAB algorithm was used to calculate the percentage of cells containing GFP levels greater than a threshold of 1.5 fold over baseline (%GFP+ cells), Values were reported as fold change in %GFP + cells over vehicle (DMSO, Sigma-Aldrich).
Cell culture and chemical treatment
T6PNE cells were maintained in RPMI (5.5mM glucose, Hyclone) supplemented with 10% fetal bovine serum (FBS, Hyclone) and 1% penicillin-streptomycin (pen-strep, Gibco) and grown in 5% CO2, 37°C. To induce E47 activity, 0.5µM or 1µM tamoxifen (Sigma-Aldrich) was added to culture media. HepG2 cells were cultured in DMEM (high glucose, Hyclone) supplemented with 10% FBS and 1% pen-strep and grown at 5% CO2, 37°C on collagen plates (BD Bio Coat). DMSO or 20µM alverine (Sigma-Aldrich), 20µM, 80µM benfluorex (Sigma-Aldrich) for 3 days and DMSO or 5µM BI6015 were added to T6PNE cells for 2days.
QPCR
RNA was purified using RNeasy Kits (Qiagen), then converted to cDNA using the qScript cDNA SuperMix (Quanta BioSciences). Q-PCR was conducted on cDNA corresponding to 2µg of RNA using an Opticon Real-Time System (MJ Research) and QPCR SuperMix (BioPioneer). All mRNA values were normalized to 18S rRNA values and are expressed as fold changes over vehicle-treated control.
DARTS assay
HepG2 cells were treated with DMSO, BI6018, BI6015, Alverine or Benfluorex at a concentration of 20µM or 40µM for 16hr.Total cell protein was extracted, measured by BCA protein assay (Thermo scientific).Each sample was split into two aliquots for proteolysis without (−) or with(+) Subtilisin (Sigma-Aldrich). Twenty ug of cell lysate was incubated with or without protease (20ng/ml subtilisin) for 35 minutes at room temperature. Western blot was then performed with primary anti-HNF4α polyclonal antibody (1:1000 dilution, Santa Cruz, 54kDa) and secondary HRP conjugated anti-goat IgG (1:2000 dilution, Jackson Immuno), detected with chemiluminescence ECL kit (Thermo Scientific). After detection, membrane was stained with Ponceau S solution (Sigma-Aldrich, M : protein ladder).
Statistical analysis
Data are presented as mean ± SEM of three or more independent cultures. Statistical significance was assessed using two-tailed unpaired Student's t-test.
Supplementary Material
ACKNOWLEDGEMENTS
We thank Hud Freeze, Margaret Dunbar, and Anthony Pinkerton for helpful discussions. This work was supported by the Sanford Children’s Health Research Center, BetaBat (in the Framework Program 7 of the European Community), and the Kenneth Rainin Foundation.
Footnotes
AUTHOR CONTRIBUTIONS
S-HL, SA, AK, TC carried out experiments. FL, S-HL, SA, AK, and TC designed experiments. S-HL and FL analyzed the data and wrote the manuscript.
CONFLICT OF INTEREST
The authors declare that they have no conflict of interest.
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