Abstract
The deoxyribonucleotide sequence of pyrB, the cistron encoding the catalytic subunit of aspartate transcarbamoylase (carbamoylphosphate: L-aspartate carbamoyltransferase, EC 2.1.3.2), has been determined. The pyrB gene encodes a polypeptide of 311 amino acid residues initiated by an NH2-terminal methionine that is not present in the catalytically active polypeptide. The DNA sequence analysis revealed the presence of an eight-amino-acid sequence beginning at Met-219 that was not detected in previous analyses of amino acid sequence. This octapeptide sequence provides an additional component of the disordered loop in the equatorial domain of the catalytic polypeptide. It had been found previously that the catalytic polypeptide is expressed from a bicistronic operon that also produces the regulatory polypeptide encoded by pyrI. A single transcriptional control region precedes the structural gene of the catalytic polypeptide and a simple 15-base-pair region separates its COOH terminus from the structural gene of the regulatory polypeptide. The chain-terminating codon of the catalytic polypeptide may contribute to the ribosomal binding site for the regulatory polypeptide and thus assist coordinate expression of the two cistrons.
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Selected References
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- Bachmann B. J., Low K. B. Linkage map of Escherichia coli K-12, edition 6. Microbiol Rev. 1980 Mar;44(1):1–56. doi: 10.1128/mr.44.1.1-56.1980. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bethell M. R., Smith K. E., White J. S., Jones M. E. Carbamyl phosphate: an allosteric substrate for aspartate transcarbamylase of Escherichia coli. Proc Natl Acad Sci U S A. 1968 Aug;60(4):1442–1449. doi: 10.1073/pnas.60.4.1442. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Casadaban M. J., Cohen S. N. Lactose genes fused to exogenous promoters in one step using a Mu-lac bacteriophage: in vivo probe for transcriptional control sequences. Proc Natl Acad Sci U S A. 1979 Sep;76(9):4530–4533. doi: 10.1073/pnas.76.9.4530. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chou P. Y., Fasman G. D. Prediction of the secondary structure of proteins from their amino acid sequence. Adv Enzymol Relat Areas Mol Biol. 1978;47:45–148. doi: 10.1002/9780470122921.ch2. [DOI] [PubMed] [Google Scholar]
- Cohlberg J. A., Pigiet V. P., Jr, Schachman H. K. Structure and arrangement of the regulatory subunits in aspartate transcarbamylase. Biochemistry. 1972 Aug 29;11(18):3396–3411. doi: 10.1021/bi00768a013. [DOI] [PubMed] [Google Scholar]
- Feller A., Piérard A., Glansdorff N., Charlier D., Crabeel M. Mutation of gene encoding regulatory polypeptide of aspartate carbamoyltransferase. Nature. 1981 Jul 23;292(5821):370–373. doi: 10.1038/292370a0. [DOI] [PubMed] [Google Scholar]
- GERHART J. C., PARDEE A. B. The enzymology of control by feedback inhibition. J Biol Chem. 1962 Mar;237:891–896. [PubMed] [Google Scholar]
- Gigot D., Glansdorff N., Legrain C., Piérard A., Stalon V., Konigsberg W., Caplier I., Strosberg A. D., Hervé G. Comparison of the N-terminal sequences of aspartate and ornithine carbamoyltransferases of Escherichia coli. FEBS Lett. 1977 Sep 1;81(1):28–32. doi: 10.1016/0014-5793(77)80920-4. [DOI] [PubMed] [Google Scholar]
- Greene P. J., Gupta M., Boyer H. W., Brown W. E., Rosenberg J. M. Sequence analysis of the DNA encoding the Eco RI endonuclease and methylase. J Biol Chem. 1981 Mar 10;256(5):2143–2153. [PubMed] [Google Scholar]
- Honzatko R. B., Crawford J. L., Monaco H. L., Ladner J. E., Ewards B. F., Evans D. R., Warren S. G., Wiley D. C., Ladner R. C., Lipscomb W. N. Crystal and molecular structures of native and CTP-liganded aspartate carbamoyltransferase from Escherichia coli. J Mol Biol. 1982 Sep 15;160(2):219–263. doi: 10.1016/0022-2836(82)90175-9. [DOI] [PubMed] [Google Scholar]
- Honzatko R. B., Monaco H. L., Lipscomb W. N. A 3.0-A resolution study of nucleotide complexes with aspartate carbamoyltransferase. Proc Natl Acad Sci U S A. 1979 Oct;76(10):5105–5109. doi: 10.1073/pnas.76.10.5105. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Imamoto F., Yanofsky C. Transcription of the tryptophan operon in polarity mutants of Escherichia coli. II. Evidence for normal production of tryp-mRNA molecules and for premature termination of transcription. J Mol Biol. 1967 Aug 28;28(1):25–35. doi: 10.1016/s0022-2836(67)80074-3. [DOI] [PubMed] [Google Scholar]
- Jacobson G. R., Stark G. R. Aspartate transcarbamylase of Escherichia coli. Mechanisms of inhibition and activation by dicarboxylic acids and other anions. J Biol Chem. 1975 Sep 10;250(17):6852–6860. [PubMed] [Google Scholar]
- Konigsberg W. H., Henderson L. Amino acid sequence of the catalytic subunit of aspartate transcarbamoylase from Escherichia coli. Proc Natl Acad Sci U S A. 1983 May;80(9):2467–2471. doi: 10.1073/pnas.80.9.2467. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Landfear S. M., Evans D. R., Lipscomb W. N. Elimination of cooperativity in aspartate transcarbamylase by nitration of a single tyrosine residue. Proc Natl Acad Sci U S A. 1978 Jun;75(6):2654–2658. doi: 10.1073/pnas.75.6.2654. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Maxam A. M., Gilbert W. Sequencing end-labeled DNA with base-specific chemical cleavages. Methods Enzymol. 1980;65(1):499–560. doi: 10.1016/s0076-6879(80)65059-9. [DOI] [PubMed] [Google Scholar]
- Meighen E. A., Pigiet V., Schachman H. K. Hybridization of native and chemically modified enzymes. 3. The catalytic subunits of aspartate transcarbamylase. Proc Natl Acad Sci U S A. 1970 Jan;65(1):234–241. doi: 10.1073/pnas.65.1.234. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Monaco H. L., Crawford J. L., Lipscomb W. N. Three-dimensional structures of aspartate carbamoyltransferase from Escherichia coli and of its complex with cytidine triphosphate. Proc Natl Acad Sci U S A. 1978 Nov;75(11):5276–5280. doi: 10.1073/pnas.75.11.5276. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Oppenheim D. S., Yanofsky C. Translational coupling during expression of the tryptophan operon of Escherichia coli. Genetics. 1980 Aug;95(4):785–795. doi: 10.1093/genetics/95.4.785. [DOI] [PMC free article] [PubMed] [Google Scholar]
- PARDEE A. B., YATES R. A. Pyrimidine biosynthesis in Escherichia coli. J Biol Chem. 1956 Aug;221(2):743–756. [PubMed] [Google Scholar]
- Pauza C. D., Karels M. J., Navre M., Schachman H. K. Genes encoding Escherichia coli aspartate transcarbamoylase: the pyrB-pyrI operon. Proc Natl Acad Sci U S A. 1982 Jul;79(13):4020–4024. doi: 10.1073/pnas.79.13.4020. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Perbal B., Hervé G. Biosynthesis of Escherichia coli aspartate transcarbamylase. I. Parameters of gene expression and sequential biosynthesis of the subunits. J Mol Biol. 1972 Oct 14;70(3):511–529. doi: 10.1016/0022-2836(72)90556-6. [DOI] [PubMed] [Google Scholar]
- Post L. E., Nomura M. DNA sequences from the str operon of Escherichia coli. J Biol Chem. 1980 May 25;255(10):4660–4666. [PubMed] [Google Scholar]
- Roof W. D., Foltermann K. F., Wild J. R. The organization and regulation of the pyrBI operon in E. coli includes a rho-independent attenuator sequence. Mol Gen Genet. 1982;187(3):391–400. doi: 10.1007/BF00332617. [DOI] [PubMed] [Google Scholar]
- Selker E., Yanofsky C. Nucleotide sequence of the trpC-trpB intercistronic region from Salmonella typhimurium. J Mol Biol. 1979 May 15;130(2):135–143. doi: 10.1016/0022-2836(79)90422-4. [DOI] [PubMed] [Google Scholar]
- Wall K. A., Schachman H. K. Primary structure and properties of an inactive mutant aspartate transcarbamoylase. J Biol Chem. 1979 Dec 10;254(23):11917–11926. [PubMed] [Google Scholar]
- Weber K. Aspartate transcarbamylase from Escherichia coli. Characterization of the polypeptide chains by molecular weight, amino acid composition, and amino-terminal residues. J Biol Chem. 1968 Feb 10;243(3):543–546. [PubMed] [Google Scholar]
- Wild J. R., Foltermann K. F., O'Donovan G. A. Regulatory divergence of aspartate transcarbamoylases within the enterobacteriaceae. Arch Biochem Biophys. 1980 May;201(2):506–517. doi: 10.1016/0003-9861(80)90539-1. [DOI] [PubMed] [Google Scholar]
- Wild J. R., Foltermann K. F., Roof W. D., O'Donovan G. A. A mutation in the catalytic cistron of aspartate carbamoyltransferase affecting catalysis, regulatory response and holoenzyme assembly. Nature. 1981 Jul 23;292(5821):373–375. doi: 10.1038/292373a0. [DOI] [PubMed] [Google Scholar]