Simultaneous Raman Microspectroscopy and Fluorescence Imaging of Bone Mineralization in Living Zebrafish Larvae

Abstract

Confocal Raman microspectroscopy and fluorescence imaging are two well-established methods providing functional insight into the extracellular matrix and into living cells and tissues, respectively, down to single molecule detection. In living tissues, however, cells and extracellular matrix coexist and interact. To acquire information on this cell-matrix interaction, we developed a technique for colocalized, correlative multispectral tissue analysis by implementing high-sensitivity, wide-field fluorescence imaging on a confocal Raman microscope. As a proof of principle, we study early stages of bone formation in the zebrafish (Danio rerio) larvae because the zebrafish has emerged as a model organism to study vertebrate development. The newly formed bones were stained using a calcium fluorescent marker and the maturation process was imaged and chemically characterized in vivo. Results obtained from early stages of mineral deposition in the zebrafish fin bone unequivocally show the presence of hydrogen phosphate containing mineral phases in addition to the carbonated apatite mineral. The approach developed here opens significant opportunities in molecular imaging of metabolic activities, intracellular sensing, and trafficking as well as in vivo exploration of cell-tissue interfaces under (patho-)physiological conditions.

Understanding fundamental biological processes relies on probing intra- and extracellular environments, targeted delivery inside living cells and tissues, and real-time detection and imaging of chemical markers and biomolecules (1,2). Typically, information about molecules in cellular environments is obtained by fluorescence microscopy (3). This is a powerful imaging tool for localizing and imaging samples but requires fluorescent labels and markers and lacks capabilities for quantitative mapping of the chemical composition in complex systems. In this regard, confocal Raman spectroscopic imaging is becoming increasingly popular for label-free chemical detection, due to the inherent scattering nature of all biomolecules (4,5). However, confocal Raman imaging alone does not allow live, high-resolution imaging of larger regions of interest in complex biological tissues. Transcutaneous Raman spectroscopy has the potential as a tool for in vivo bone quality assessment (6), whereas the time- and space-resolved Raman spectroscopy allows the visualization in vivo of the distributions of molecular species in human and yeast cells (4,5,7). Here we developed a correlative Raman and fluorescence imaging method that combines the strengths and compensates for the shortcomings of each of these imaging modalities and allows studying in vivo processes in complex animal models such as zebrafish larvae. There are two main advantages of this approach over previous studies (8,9): low light intensity and high acquisition rate, making it well suited for real-time investigation of live samples.

Fig. 1, a and b, shows a schematic representation of the experimental setup and of the optical path, respectively. The two techniques are implemented on a commercially available Raman microscope body to perform simultaneously confocal Raman spectroscopy and wide-field fluorescence imaging (see the Supporting Material for details of components). Briefly, the multimodality of the setup is provided by a combination of dichroic mirrors (DM 1–3) and filters that at turns reflect or transmit the excitation and emission signals. This combination of optics allows simultaneous collection of fluorescence images (2560 × 2160 pixels at 30 fps) with excitation at 400 and 490 nm and spatially resolved Raman spectra with excitation at 633 nm.

Figure 1.

Fluorescence imaging of zebrafish larvae. (a) Cartoon of the experimental setup showing how the different modules are assembled onto the microscope for the simultaneous use of confocal Raman spectroscopy and fluorescence imaging. (b) Schematic representation of the optical path. (c) Fluorescence image of calcium-containing tissues, and fluids stained with calcein blue and excited at 400 nm (top). Endothelial cells of transgenic tg(fli1:EGFP)y1 zebrafish excited at 490 nm (bottom).

As a proof of principle, we have studied the different mineral phases involved in bone formation of the zebrafish larvae. The bone development process involves the transport of ions to specific cells (osteoblasts) that are responsible for the subsequent mineral formation and deposition. The mineral phase in these cells is a poorly characterized disordered calcium phosphate (10–12). The mineral-bearing intracellular vesicles release their content into the extracellular collagen fibrils, where the mineral subsequently crystallizes as carbonated hydroxyapatite (13). Very little is known about the phase transformations the mineral undergoes after the deposition into the collagen matrix in vivo. Raman spectroscopy studies of bone tissue in organ cultures evidenced that the inorganic mineral deposition proceeds through transient intermediates including octacalcium phosphate-like (OCP) minerals (14).

To assess the feasibility of imaging a vertebrate organism, fluorescence images of an entire zebrafish larva (Fig. 1 c) were acquired with the correlative fluorescence-Raman setup. The two images in Fig. 1 c were composed by merging several low-magnification (10×) fluorescence images. Larvae of transgenic zebrafish Tg(fli:EGFP); nac mutants (albino fish) expressing EGFP in the cytoplasm of endothelial cells was used. The newly formed bones were stained by soaking the live embryo noninvasively in the calcium markers calcein blue 0.2% wt or calcein green 0.2% wt.

The calcein blue marker is excited at 400 nm. It is labeling bones and can be also detected as a fluorescent marker not associated with formed bones (e.g., stomach) (Fig. 1 c, top). At 490 nm, calcein green and endothelial cells within blood vessels expressing EGFP are excited (Fig. 1 c, bottom). Because EGFP and calcein blue have significantly different excitation and emissions spectra, dual staining with calcein blue (as a mineral marker) and EGFP allows fast-switching dual-wavelength fluorescence imaging. Furthermore, because the spectra of the calcium markers and EGFP do not extend beyond the Raman laser, these fluorophores are appropriate candidates for experiments requiring Raman and fluorescence imaging. The dual-excitation offers the capability of mapping several tissues in a single experiment at the video rate. This, in principle, could be used to probe different parameters of the microenvironment (e.g., pH (15), temperature (16), viscosity (17), and calcium concentration (18)) using wavelength-ratiometric fluorescence imaging which, in correlation with confocal Raman spectroscopy, could open new strategies in studies of the microenvironmental properties in living tissues.

The fin rays of zebrafish are a simple, growing bone-model system, in which the fins are gradually mineralized within spatially resolved regions (19). Raman spectroscopy revealed details of the calcein green-stained fin where new bone is deposited (Fig. 2). In Fig. 2 a, a fluorescence image of a zebrafish larva analogous to the top image in Fig. 1 c is shown. The right inset in Fig. 3 b shows higher-magnification (60× water-immersion objective) details of the calcein green-stained fin typical of newly deposited bone. Raman spectra of progressively mineralized bone tissue were acquired within representative regions (Fig. 2 b; numbered 1–4). The spectra exhibit characteristic bands that can be assigned to the organic protein extracellular matrix (amide I, amide III, Phe, C-H, etc.) and the inorganic mineral content (v₁, v₂, v₄ of PO₄³⁻).

Figure 2.

Correlative fluorescence-Raman imaging of zebrafish fin bone maturation. (a) Low-resolution (10×) fluorescence image of zebrafish stained with calcein green, with high-resolution (60×) details (right inset in panel b) of a representative fin ray region where Raman spectra (b) of progressively mineralized bone tissue were acquired (numbered 1–4). (Left inset in panel b) Integral of the orientation independent mineral band (v₂) where a clear drop of the mineral content can be observed.

The analyses of the orientation-independent v₂ phosphate band revealed a clear drop in the mineral content based on the intensity integral (left inset in Fig. 2 b). Assuming that the spectrum collected in region 4 contains only organic matrix (very small phosphate-related peaks) and by subtracting it from the spectrum of mineral-rich bone region (spectrum 1, proximal part of the tail bone), spectral features of only the mineral phase can be plotted (black line). In addition to the phosphate (PO₄³⁻) and carbonate (CO₃²⁻) bands assignable to the carbonated apatite phase characteristic of the more mature bone mineral, several peaks related to the hydrogen phosphate (HPO₄²⁻) species can be clearly distinguished.

The HPO₄²⁻ peaks are characteristic of the OCP mineral phase that has been postulated, together with amorphous calcium phosphate, as an intermediate mineral phase in the process of bone maturation (10,13,14,20), but never observed directly in living animals. Our findings show in vivo potential of the correlative setup envisioned by Crane et al. (14) and confirm that the mineral maturation indeed proceeds through an OCP-like mineral phase. Further analysis of the mineral spectrum in Fig. 2 b reveals an extremely broad band in the region 800–1100 cm⁻¹. This envelope can be related to hydrogenated phosphate species typical of amorphous calcium phosphate precipitated in an acidic environment (see Fig. S1 in the Supporting Material), suggesting that this phase is also contributing to the maturation process.

In conclusion, the methodology developed here allows for unprecedented chemical characterization of fluorescently-labeled biological tissues in vivo. The approach is suitable for long-term in vivo characterization of zebrafish bone mineralization under (patho-)physiological conditions. Furthermore, the setup can be upgraded to host other advance fluorescence imaging techniques such as super-resolution microscopy (e.g., photoactivated localization microscopy), two-photon excitation, and Forster resonance energy transfer or fluorescence lifetime imaging microscopy, and be applied on both in vivo and in vitro specimens. This opens significant opportunities in molecular imaging of metabolic activities, intracellular sensing, and trafficking as well as in vivo exploration of cell-tissue interfaces.