Abstract
Purpose
The calibratable relationship between blood oxygenation (Y) and T2 allows quantification of cerebral venous oxygenation. We aim to establish a calibration plot between blood T2, Y, and hematocrit (Hct) at 7T, and using T2-Relaxation-Under-Spin-Tagging (TRUST) MRI, determine human venous blood oxygenation in vivo.
Methods
In vitro experiments were performed at 7T on bovine blood samples using a CPMG-T2 sequence, from which we characterized the relationship among T2, Y, and Hct. TRUST MRI was implemented at 7T to measure venous blood T2 in vivo, from which oxygenation was estimated using the in vitro calibration plot. Hyperoxia was performed to test the sensitivity of the method to oxygenation changes, and the 7T results were compared to those at 3T.
Results
In vitro data showed that arterial and venous T2 at 7T are 68ms and 20ms, respectively, at a typical Hct of 0.42. In vivo measurement showed a cerebral venous oxygenation of 64.7±5.0% and a test-retest coefficient-of-variation of 3.6±2.4%. Hyperoxia increased Yv by 9.0±1.4% (P=0.001) and the 3T and 7T results showed a strong correlation (R=0.95) across individuals.
Conclusion
We provided an in vitro calibration plot for conversion of blood T2 to oxygenation at 7T and demonstrated its utility in vivo.
Keywords: blood oxygen saturation, blood T2, 7T, TRUST, brain
Introduction
The knowledge of blood T2 and its dependence on oxygenation (Y) have important implications in several MRI techniques such as interpretation of Blood-oxygenation-level-dependent (BOLD) fMRI signal (1,2), blood flow quantification in Arterial-Spin-Labeling (ASL) MRI (3), and for optimization of angiogram and venogram sequences (4). A particularly exciting application of this calibratable relationship is the quantification of venous oxygen saturation (Yv) via the measurement of blood T2 in vivo (5–17). These methods have demonstrated potential utilities in the normalization of fMRI signals (18), evaluation of brain metabolism (19), and understanding brain disorders (20). To date, all such studies have been performed at field strengths of 3T or lower.
Given that the susceptibility effect of deoxyhemoglobin increases with field strength (21–23), which has been one of the main motivations for high-field fMRI (23), it would be important to assess the potential of T2-based oximetry techniques at 7T. It is well accepted that the blood T2 is dependent on both Y and hematocrit (Hct) (24), since the modulation of either will cause a change in the local field. Blood T2 at 7T has been measured for comparison of different biophysical models (11), but a complete calibration plot between T2, Y, and Hct is not fully established at this field strength. The goals of the present study are therefore two-fold. First, we aim to obtain the relationship between blood T2 and oxygenation at 7T (using in vitro blood sample experiment) in the context of various Hct levels. Second, we implemented a recently developed T2-Relaxation-Under-Spin-Tagging (TRUST) MRI technique at 7T and determined venous blood T2 in human superior sagittal sinus. Utilizing the in vitro relationship as a calibration plot, we estimated global cerebral venous oxygenation. The technique was further evaluated using a hyperoxia maneuver to test its sensitivity to oxygenation changes. The 7T TRUST results were compared to those at 3T in the same participants.
Methods
In vitro study
In vitro experiments were performed on bovine blood (with 25 mM sodium citrate to avoid coagulation), which is known to have physiological and MR properties comparable to human blood (8,12,14,25,26). The blood was used on the same day that the sample was obtained from the local slaughter house. Experiments were performed on three pre-determined Hct levels that cover the normal range of this parameter (Hct = 34%, 42%, 54%). At each Hct, 10–18 oxygenation levels (range 27–100%) were assessed, and they are completed using 2–3 batches of blood. Hct was adjusted by adding or removing plasma after spinning the blood samples in a centrifuge at 2500 RPM for 30 minutes. The oxygenation of the sample was modulated with exposure to room air or a nitrogen atmosphere. Oxygenation and Hct were measured using a blood gas analyzer (Radiometer ABL80 FLEX, Copenhagen, Denmark).
Blood samples were placed in 27 mm plastic tubes and scanned using a small animal 7T (16-cm horizontal bore) MR scanner (Varian Inc, Palo Alto, CA) with a 38 mm birdcage RF coil. The temperature of the blood was controlled by initially placing the tubes in a 37°C water bath while gently agitating the sample to keep the erythrocytes in suspension. The sample was then transferred to the scanner, where the ambient temperature of the magnet bore was maintained at 37°C with heated air on a temperature-controlled feedback loop. The blood T2 was measured with a Carr-Purcell-Meiboom-Gill (CPMG) T2 spectroscopy sequence (27,28) with τCPMG = 5 ms and effective echo time (eTE) = 10, 20, 40, 80, 160, and 320 ms, corresponding to 2, 4, 8, 16, 32, and 64 hard refocusing pulses (180° pulse = 235 μs pulse duration), TR = 15,000 ms, 2 averages, and scan duration = 3 minutes. Estimation of T2 was based on standard mono-exponential fitting and the goodness-of-fit was evaluated by a Matlab (Mathworks, Natick, MA) function, nlparci, which provides the standard error (=95% confidence interval/2/1.96) of the parameter estimation. The blood T2 was measured twice on each Hct-Y combination, and the second measurement was constrained to provide a T2 value that was within 1 ms of the first measurement. If not, the sample was agitated and the T2 measured again, in case precipitation had occurred during the scan. We note that we only had to re-agitate the sample in 2 out of 40 measurement sessions. Thus, the precipitation effect within the 6-minute session (3 minutes × 2) is minimal. This is also consistent with the relatively slow sedimentation rate of erythrocyte of approximately 1 mm/hour (29,30).
To establish the calibration plot, we first fitted the T2-Y data at each Hct value to a model proposed by Wright et al. (7) and Golay et al. (8) :
[1] |
where A, B, and C are coefficients estimated from the data fitting. Linear interpolation of each coefficient was then used to cover the entire range of Hct. With this procedure, we obtained a 3D plot completely characterizing the relationship among T2, Y, and Hct.
In vivo study: general procedures
In vivo study was performed on a 7 Tesla whole-body MRI scanner (Achieva, Philips Medical Systems, Best, The Netherlands). The protocol was approved by the University of Texas Southwestern Medical Center's Institutional Review Board. RF transmission and reception was achieved via a volume Transmit/Receive head coil (Nova Medical Inc, Wilmington, MA), where quadrature was used for transmission, and 16 channels were used for receiving. The subjects were instructed not to fall asleep (verified after the scan), and foam padding was placed around the head to minimize motion.
The placement of the imaging and labeling slab for 7T TRUST is depicted in Figure 1a, where the yellow rectangle represents the imaging slab, and the green rectangle represents the labeling slab. The pulse sequence diagram of the 7T TRUST is similar to the one previously developed at 3T (5,6) and is illustrated in Fig. 1b. It applies the spin labeling principle (red-box) on the venous side and acquires control and labeled images, the subtraction of which yields pure venous blood signal (5). T2 value of the pure venous blood was then determined using non-selective T2-preparation pulses (blue-box), minimizing the effect of flow on T2 estimation. Due to relatively large flow velocities, TRUST measurements in large venous vessels, e.g. sagittal sinus, was found to be particularly robust, and was thus chosen as the vessel-of-interest in the present study. A pre-saturation pulse train (green-box) is applied on the imaging plane to suppress static tissue signal using a Water suppression Enhanced through T1 effects (WET) scheme (τWET = 10 ms, θ1 = 106.8°, θ2 = 86.8°, θ3 = 76.0°, θ4 = 153.6°) (31,32). A non-selective post-saturation pulse train (black-box) is used to “reset” the magnetization of all spins, which was shown to improve the measurement accuracy in TRUST (6) and other sequences (33–35). Single slice acquisition (orange-box) used a single-shot gradient-echo EPI.
The T2-preparation incorporated hard composite refocusing pulses (90x-180y-90x) using a MLEV-16 phase cycling scheme (36), which requires that a multiple of four refocusing pulses be used in order to minimize the effect of imperfection in flip angle (due to B1 and B0 inhomogeneities). We used τCPMG = 5 ms (Figure 1, blue-box) to match our in vitro blood calibration curve. Two eTEs of 20 and 40 ms (composed of 4 and 8 refocusing pulses respectively) were used, since the blood T2 at the target Hct-Y combination is short and a larger number of refocusing pulses (e.g. 12, 16, etc) would result in excessively diminished signal. Other imaging parameters are as follows: FOV = 220 × 220 mm2, Acquisition matrix = 64 × 64, in-plane resolution 3.4 × 3.4 mm2, half-scan factor = 0.636, SENSE factor = 3 (AP), echo time (TE) = 2.7 ms, 1 slice, slice thickness = 5 mm, TR = 3.3 sec, inversion time (TI) = 800 ms, label thickness = 100 mm, label gap (between imaging and label slab) = 22.5 mm, head SAR = 3.7 W/kg, 16 averages, scan duration = 3.5 minutes. The imaging slice is placed parallel to the AC-PC line, 30 mm above the draining vessel's confluence point.
In vivo study design
A total of 24 subjects were scanned, and were categorized into one of three study sub-groups: feasibility, reproducibility, or sensitivity study. Feasibility of the proposed TRUST sequence was tested in an initial sub-group of 15 participants (age 31±8 years, range 23–54, 11 Males). Reproducibility of the TRUST protocol was evaluated in a second sub-group of 5 subjects (age 33±4 years, range 27–39, 4 Males), by repeating the scan 5 times in one session. Coefficient of Variation (CoV) was calculated based on standard deviation of the multiple scans divided by their mean.
Sensitivity of the technique to oxygenation changes was tested by inducing hyperoxia in a third sub-group of 4 subjects (age 33±8 years, range 26–41, 3 Males) (37). For verification of the 7T results, we also performed the TRUST scans on a 3T (Achieva, Philips Medical Systems, Best, The Netherlands), which we have validated previously (26). The 3T protocol and imaging parameters were similar to an optimized protocol (38), though some parameters were altered to match the 7T protocol in scan duration (TR=3.3 sec, TI=1064 ms, 64 dynamics, 8 averages). This resulted in matched scan duration of 3.5 minutes at both field strengths. Each subject was scanned on both 7T and 3T on the same day, the order of which was counterbalanced across participants. On each scanner, a baseline (normoxia) TRUST scan was conducted while the subject breathed room-air. Then, without repositioning the subject, hyperoxia was induced by having the subject inhale a gas mixture of 98% O2 and 2% CO2, using procedures described previously (37). The small amount of CO2 was added to offset the subject hyperventilation and to maintain the constant end-tidal CO2 (37). After switching the gas, a 3 minute waiting period was used to allow the subject's physiology to stabilize, after which a TRUST scan under hyperoxic state was conducted. Vital signs including end-tidal O2, and end-tidal CO2 were continuously monitored during the entire session. After all scans, 5cc of blood was drawn from the arm to determine the subject's Hct using a micro-centrifuge (Hemata STAT II, Separation Technology, Inc., Altamonte Springs, FL, USA). Comparison between results at the two field strengths was conducted using scatter plot, paired Student t-test, and Pearson correlation coefficient.
In vivo MRI Data Analysis
The in vivo imaging data was analyzed using in-house Matlab (Mathworks Inc, Natick, MA) codes as described previously (5). Briefly, a difference image between control and label images was computed. The four voxels in the sagittal sinus with the largest difference signal were included in the ROI mask. The averaged signal in the mask was fitted to a mono-exponential function of eTE to obtain the decay constant, d. Blood T2 was then calculated by 1/T2 = d + 1/T1. We point out that, since blood T1 at 7T (~2100ms (39–41)) is more than 20 times greater than T2, the impact of the T1 variation is minimal. Note that, in this study, we delineated the vessel voxels using the TRUST difference image instead of a separate anatomic image. The reason is that voxel masks defined on anatomic image may not be readily applicable to the TRUST data due to several factors including differences in spatial resolution, EPI distortion in the TRUST images, and potential subject motion between the TRUST and anatomic scans.
Results
In vitro T2 relaxometry
The in vitro data resulted in reliable T2 fittings. The standard error of the estimated R2 (=1/T2) was 1.1±1.4 Hz (mean±sd, range 0.1–6.0 Hz, N=40). Figure 2a shows the in vitro blood T2 versus Y at each Hct level. There is a minor influence from Hct, with major changes in T2 resulting from changes in Y. The constants for Equation [1] can be found in Table 1. Linear interpolation of each coefficient can be used to describe T2-relaxometry at other Hct values. At a typical Hct level of 0.42, arterial (assuming 100% oxygenation) and venous (assuming 60% oxygenation) blood T2 are expected to be 68 ms and 20 ms, respectively. Comparing to lower field strengths of 3T (26) and 1.5T (13), the blood R2 (=1/T2) at 7T (acquired in this study) changes much more rapidly with Y (Figure 2b). Similar field-dependent curves for blood R2* have been shown by Blockley, et al. (40).
Table 1.
Hct | A | B | C |
---|---|---|---|
34% | 14.6 | −31.2 | 223.5 |
42% | 14.9 | −17.6 | 264.0 |
54% | 16.7 | 3.7 | 240.9 |
In vivo study
Figure 3 shows a representative TRUST dataset at 7T. TRUST MRI results in a label and control image for each eTE, which are then magnitude subtracted to provide a difference image of pure blood signal (Figure 3a). Note that the blood signal in the target vessel, the superior sagittal sinus, is quite robust and decays with T2-preparation duration (eTE), allowing for a reliable R2 fitting (Figure 3b). The standard error of the R2 estimation was 4.8 ± 2.3 Hz. Of the 15 subjects scanned for the feasibility test, the blood T2 was 25.0 ± 4.8 ms (Mean ± STD). Using the in vitro calibration plot established above, these T2 values were converted to Yv of 64.7 ± 5.0%.
The reproducibility of TRUST at 7T was investigated by repeating the protocol 5 times in a single session in a group of subjects. CoV of the measurements was 3.6 ± 2.4%, which is larger than the 3T TRUST CoV of 1.9 ± 0.6 % reported in the literature (38), but is still relatively small compared to normal variation of human Yv from 50–75% (42). The effect of ROI size was tested by varying the number of selected voxels from 1 to 6, and it was found that the estimated T2 was not dependent on the ROI size, consistent with previous observations at 3T (5).
Data from the physiologic challenge study are summarized in Table 2. TRUST scans at the 7T showed that hyperoxia maneuver increased Yv by 9.0 ± 1.4 % (Mean ± STD, P=0.001), which is consistent with the 10.6% increase reported in the literature using a similar gas mixture (37). The 7T results were also supported by the 3T data collected in the same subjects, which showed an 8.3 ± 1.0 % increase in Yv. The increase in Yv measured at 3T was not significantly different than 7T, as evaluated with a paired t-test (P = 0.57). Furthermore, the 3T and 7T Yv results are significantly (R=0.95, P=0.0004) correlated across individuals (Figure 4). There was no difference in the Yv values measured at 3T versus 7T (P=0.77), and their regression slope was close to unity (slope=0.998).
Table 2.
Normoxia | Hyperoxia | |||||||
---|---|---|---|---|---|---|---|---|
|
||||||||
B0 | EtO2 | EtCO2 | T2 | Yv | EtO2 | EtCO2 | T2 | Tv |
3T | 135±3 | 41±3 | 60.3±5.9 | 60.5±3.6 | 697±6 | 39±2 | 77.2±8.3 | 68.9±3.7 |
7T | 133±2 | 41±3 | 20.5±4.3 | 60.0±5.6 | 701±2 | 38±2 | 29.7±6.9 | 69.0±6.1 |
B0 – field strength, EtO2 – end-tidal O2 (mmHg), EtCO2 – end-tidal CO2 (mmHg), T2 – in vivo blood T2 (ms), Yv – venous blood oxygenation (%).
Discussion
The present study showed that blood CPMG-T2 at 7T is dependent on both hematocrit and oxygenation levels, the slope of which is greater than those at lower fields. Using this relationship as a calibration plot, venous oxygenation in the human brain can be estimated in vivo. The oxygenation values measured at 7T were in excellent agreement with the 3T results and also showed a strong sensitivity to oxygenation changes induced by hyperoxia.
Dependence of blood T2 and T2* on oxygenation has been well established at 1.5T (7,12,13,32,43), and 3T (14,26,43), but the literature at 7T is not extensive. The only report we are aware of on CPMG-T2 at 7T is the study of Gardener et al. (11), who compared the exchange and diffusion models in describing the T2 relaxation process in blood. In the present study, blood T2 was only measured at a τCPMG = 5 ms, since our goal is to provide a calibration plot rather than performing an investigation of biophysical modeling. We compared the T2 values (at τCPMG = 5 ms) and their dependence on oxygenation between the two studies. T2 of fully oxygenated blood in the present study and Gardener et al. is 68 ms and 64 ms, respectively, showing good agreement. The values, however, showed some discrepancy for less oxygenated blood. Specifically, the T2 data from the present study revealed a stronger dependence on oxygenation (solid blue curve in Figure 2c), compared to the data in the earlier study (dashed blue curve in Figure 2c). One possible reason for the discrepancy is the condition of the blood samples used. In all of our experiments, the blood samples were scanned within 5 hours of collection from the animal, thus the fraction of lysed cells is expected to be minimal. In the earlier study, blood samples up to 48 hours after drawing were used, and the likelihood of cell lysing is greater. Lysed cells are known to be associated with a longer T2 (23). Our testing showed that, for fully oxygenated blood, T2 of lysed cells is approximately 20% greater than that of whole blood. For venous blood oxygenation, this difference could be more than 90%. Note also that this effect is expected to be present at all field strengths. Another potential reason is the species-dependent differences in blood properties. The present study used bovine blood, as opposed to human blood used by Gardener, et al. However, we point out that bovine blood has been widely used in previous T2-relaxometry studies (8,10,14,26,39,44,45) and has been shown to be valid for human data calibration (8,9,16,26), mainly because its physiologic and MR properties are comparable to human blood (25). Thus, the effect of species difference is expected to be relatively small. There are other factors that could affect the estimated T2 values, such as sample preparation, the actual degree of the refocusing pulse angles, and details of the pulse sequences. We would like to point out that our in vivo data appears to support the in vitro results, in that the estimated venous oxygenation values using the in vitro calibration plot are well within the expected range and are in excellent agreement with the 3T results. We have also tested the calibration plot by Gardener et al. to calibrate our in vivo data. We found a normoxia venous oxygenation of 19.3% and a hyperoxia oxygenation of 44.3%, which are considerably lower than the present 3T results and the normoxia literature values of 58.4–67.1% (5,8,15,17,19,37,38,46–51) and hyperoxia literature values of 75.5% (37).
To our knowledge, the present study is the first report to quantitatively evaluate blood oxygenation in humans at 7T. Our observed venous oxygenation at 7T was within the expected range, and was further supported by the 3T results, which suggests that in vivo measurement of blood T2 at 7T is feasible. Although this study has primarily focused on a global oxygenation technique, it should be noted that the T2-versus-oxygenation relationship provided in the present study is not limited to TRUST application, but can also be used for calibration of other T2-based oximetry techniques, such as QUIXOTIC (16), VSEAN (17), TRU-PC (15,52), and IQ-OEF (53). It should also be mentioned that other oximetry techniques that do not require T2-calibration are available. These methods include quantitative Blood-Oxygenation-Level-Dependent (qBOLD) contrast (46,50,54,55), susceptibility phase based techniques (47–49,51), gas inhalation techniques (56–58), and quantitative susceptibility mapping (QSM) methods (59). Most of these techniques may also benefit from the increased field strength at 7T.
Comparing T2 oximetry between 7T and 3T, the higher field strength provides certain advantages, but also presents new challenges. The advantages associated with the higher field include greater intrinsic SNR and increased susceptibility effects of deoxyhemoglobin, which results in a steeper dependence of blood R2 on oxygenation. However, greater B0 and B1 inhomogeneities at higher fields also bring several obstacles. For example, we were not able to use an eTE of 0 ms (i.e. tip-down followed immediately by tip-up pulse) when the signal is supposedly the strongest. This is because there is a finite amount of time (~0.6 ms) between the tip-down and tip-up pulse, which causes the magnetization to rotate away from the original axis when the spin is off-resonance. Thus, the tip-up pulse is not able to return all of the magnetization back to the longitudinal direction. This effect manifests itself as an eTE=0 signal that is consistently lower than the fitting curve. Therefore, the shortest TE we could use in this 7T study was eTE = 20 ms. Note that this factor by itself reduced our starting SNR by approximately 63% (assuming a blood T2 of 20 ms). We believe this was a major reason for the larger variability of our 7T data compared to previous 3T results (38). Another issue is that we were not able to use a long eTE of 80 ms, because the signal would have decayed too much (to about 2% of the original signal) considering a blood T2 of 20 ms. As a consequence of both effects, our 7T protocol used two eTE values corresponding to 4 and 8 refocusing pulses, as opposed to our standard 3T protocol in which we use four eTE values corresponding to 0, 4, 8, and 16 refocusing pulses. As a simple demonstration, we took the 3T TRUST reproducibility data (CoV quoted at 1.88% (38)) and re-analyzed the data by excluding eTE 0 and 160 ms. The new average intra-session CoV at 3T becomes 4.3±3.7%, which is larger than the 7T CoV of 3.6±2.4%. Therefore, future efforts for 7T T2-based oximetry should emphasize the improvement of B0 and B1 homogeneity. For small vessel techniques, it may be helpful to use local volume shimming or apply dielectric bags for these purposes (60). Additionally, SAR is greater at 7T, which increased our TR (to 3300 ms) compared to the optimized TR of 3000 ms at 3T. B1 shimming may be useful to reduce the SAR constraints.
A limitation of the present study is that the in vivo and in vitro data were acquired on different MRI systems. We chose to perform the in vitro study on an animal system, because the B1 and B0 inhomogeneities will be minimized in the smaller bore of the animal system. However, since the MRI systems were different, the resulting pulse sequences, in particular the T2-preparation pulses, were not exactly matched. This raised the question whether it is valid to use the in vitro data to calibrate the in vivo T2 in our results. We therefore conducted additional experiments on the 3T to verify the 7T Yv values. The excellent agreement between the 7T and 3T data (Figure 4) suggests that the calibration results were generally acceptable. We speculate that two processes in the human 7T MRI system may be in play concomitantly, and their consequences in biasing T2 estimation partially cancel out. One is that the human 7T sequence used a composite refocusing pulse, which is known to result in a longer apparent T2. The other is that human 7T imaging is known to suffer from B1 inhomogeneity, the consequence of which is a shortened apparent T2. We did not perform a dedicated B1 map in our study. However, using signal intensities in the TRUST images, we estimated that the B1+ field in the sagittal sinus area was 83±2% (mean±SD, N=5) of the nominal value. According to our simulation, the effect of this reduced B1+ in combination with the pulse width effect will yield a T2 that is 94±7% of the true T2. Future study using B1 mapping and, preferably, improved B1 homogeneity is needed to verify these predictions.
Conclusion
We characterized the relationship between blood T2, oxygenation, and Hct at the field strength of 7T, thereby providing a foundation for future experimental or simulation studies that may benefit from this information. We also reported the first study to quantitatively estimate blood oxygenation in human brain at 7T and verified the results with 3T experiments.
Acknowledgements
The authors would like to thank Dr. Ksenija Grgac for invaluable information on performing in vitro blood experiments. We would also like to thank the faculty and staff of the Advanced Imaging Research Center for all of their help and resources, especially Dr. Kim Kangasniemi and Charles “Chuck” Storey for great support on the blood experiments.
Grant Sponsors: NIH R01 MH084021, NIH R01 NS067015, NIH R01 AG042753, NIH R21 NS078656
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